Array 1 604-347 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260161.1 Porphyromonas gingivalis F0566 Scaffold910, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 603 30 100.0 46 .............................. GAAAGCTATTCCCAGTTGCAACAACCACCGATGGGGCAAAACAGCA 527 30 100.0 46 .............................. GAAAGCTATTCCCAGTAGTCCGCAGGCGAGGTAAAACTTCACGGCC 451 30 100.0 45 .............................. GAAAGCTATTCCCAGTCTACAACGCCTCGAGACCTTGAGGCAATC 376 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 100.0 46 GCTGTGCGTTGCAACAAAAATACTAAATCT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATACTAAATCTGAAAGCTATTCCCAGTGTTGGAAGCTATGCTTTCTTCGGTAACGTTGCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGTGGGTTCAGACAATGCCCGTACCCTTGCCGCGCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGTGTTTATTGTTCCGCCATTACATGGCTGTTTGCTGTGCGTTGCAACAAAAATACTAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATACTAAATCTGAAAGCTATTCCCAGTATAAGGGAATAATAATATATCAGTCGAAGA # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAAAATACTAAATCTGAAAGCTATTCCCAGTCAAGGAGCGCAGCTCCATCATCTCATACCTGCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGTGCAATGAAAAAAACTATCTTTTTCCTGTTTGCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGTGACCTCTACGCTACTGTACAGCGCATCGTAGCTGTGCGTTGCAACAAAAATACTAAATCTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 16495-15872 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260157.1 Porphyromonas gingivalis F0566 Scaffold885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16494 30 100.0 36 .............................. TTTAGAATCGGCGTAAAAATTGATATTCCCCGACTC 16428 30 100.0 36 .............................. TGCTCGAGATGACAGACAACAACGATAAGATTACTA 16362 30 100.0 34 .............................. ATCTGCAAGTTTCGCCAGGCGGCCGCCTGGCGGG 16298 30 100.0 37 .............................. TACTGTTTCGTACGTCCGAAGGAGCTGAGCATGCTGC 16231 30 100.0 36 .............................. GCTGAATGGAAATGAGCTTACTGCGAAGCTCTCCAT 16165 30 100.0 36 .............................. CACGAGTAATCGTGATCTCCCTGTCCATCATCAGCT 16099 30 100.0 36 .............................. TTCGTATGCTTTCTTTTCTGTAGAGAAGTAATCATC 16033 30 100.0 36 .............................. AAGATGCCGCCGCGCAGGGGATCGAATTCGACATCA 15967 30 100.0 36 .............................. TAGAGGGATTCACCTCTGTGGATGAAGGTTTCTATA 15901 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AAATGCCCTTGATTCACGTTCGAGAGCACCTGCGTGAACTGTTTTAATTCCTGTATGGTGCAATTGAAATCTTAATAAACCCCCATGATGGAAAAGAGGTTGTTAGGTTTTAATTCCTGTATGGTGCAATTGAAATCGTTCGGGCTTCGGGCAGTGCTACCGTTCGGGCTTGTTTTAATTCCTGTATGGTGCAATTGAAATCACATCGAACCTTGAAGCTTTCACGATGCCTGTCAGTTTTAATTCCTGTATGGTGCAATTGAAATCAGGGACAGGTCGTGGCCGTAGAGCACTACAGGGTGTTTTAATTCCTGTATGGTGCAATTGAAATGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTATGGTGCAATTGAAATGCCCTTATCGACCTGTTTAGCAAAACAACCGCTAACA # Right flank : TCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 17871-16664 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260157.1 Porphyromonas gingivalis F0566 Scaffold885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 17870 30 96.7 36 A............................. CAAGCAGCTGATCGAGTCGCAGGGACAGGGACTATC 17804 30 100.0 35 .............................. TCAATCTGCGTATAGCCCTCGCCGTCGACGCCCTG 17739 30 100.0 34 .............................. GTGACGAAAAGCAGACTGCAGTCGTCGTGCGTAA 17675 30 100.0 35 .............................. TCGATCCGCTAATACGGGGGAAATAGGCTGTTAAT 17610 30 100.0 35 .............................. ACAGCAGATGTAACGCTTCCGTCCGACTTAAAGAT 17545 30 100.0 34 .............................. TCCATCATGATGATTGTTGGAGCTTGCGTATTTT 17481 30 100.0 36 .............................. CTTCAATTGCTTTTAGTTGTTCTTTTGAATTTTCAA 17415 30 100.0 36 .............................. CCGAGCAAACCGCAGCCATGTTCGACGTGACGTGGC 17349 30 100.0 34 .............................. CGGGACGACGCCCCGATTGTTGATTGCATCGCCC 17285 30 100.0 37 .............................. TCTTCCCGTTGTGTATTGTACTAAAATAAAAATCCAG 17218 30 100.0 36 .............................. GGGGAGCACGTGCCGGACTGGCGATTTACGCCGATC 17152 30 100.0 36 .............................. GGGCATAAAAGGCACCCTGTATATCGCCTTCACCGA 17086 30 100.0 36 .............................. GTTGTACTCCGAGAGGATTTCCTCAAAGGAGTACAC 17020 30 100.0 36 .............................. GCCCTTGATTCACGTTCGAGAGCACCTGCGTGAACT 16954 30 100.0 36 .............................. CTTAATAAACCCCCATGATGGAAAAGAGGTTGTTAG 16888 30 100.0 35 .............................. CGTTCGGGCTTCGGGCAGTGCTACCGTTCGGGCTT 16823 30 100.0 35 .............................. CACATCGAACCTTGAAGCTTTCACGATGCCTGTCA 16758 30 100.0 35 .............................. CAGGGACAGGTCGTGGCCGTAGAGCACTACAGGGT 16693 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 99.8 35 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : AAGCCATGATGAGAAATTATCGTGAGTATGCACCTGTAGAGCTCGGAGGTTCGCCCGTGCAGGAAATATTGGACTATGCTTCTCTCGAAGGAAAAGATTTCACAAGAGGAGAGAAGTTTTCACTCGATATGCCTACAACGAGCAATGTTCTTCAGTACAAGACCGAGGATGGCACCAAGGTTTCCATCCGTCCGTCAGGTACTGAACCGAAAATCAAGTTTTACATCGGAGTTCATTTCTCGGTCGCTAATGAGCAGGAATTAGACCGGGCCTATATAGTAGCAGAAGAAAAGATTGCTACCATCCTCCACGACCTCGGTGTCTGATCTGCTTTTTCGGCTATAGATTAAGATAAATCAAGGGCTGCACCATAAGGGACTCTCCCCTTTGGTACACCCCTTAGTCTACTTTTTTATTTGTACGATATCCCCTATGCCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATAC # Right flank : GCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAATTCCTGTATGGTGCAATTGAAATGCCCTTATCGACCTGTTTAGCAAAACAACCGCTAACAGTTTTAATTCCTGTATGGTGCAATTGAAATTTTAGAATCGGCGTAAAAATTGATATTCCCCGACTCGTTTTAATTCCTGTATGGTGCAATTGAAATTGCTCGAGATGACAGACAACAACGATAAGATTACTAGTTTTAATTCCTGTATGGTGCAATTGAAATATCTGCAAGTTTCGCCAGGCGGCCGCCTGGCGGGGTTTTAATTCCTGTATGGTGCAATTGAAATTACTGTTTCGTACGTCCGAAGGAGCTGAGCATGCTGCGTTTTAATTCCTGTATGGTGCAATTGAAATGCTGAATGGAAATGAGCTTACTGCGAAGCTCTCCATGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 163560-163792 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260014.1 Porphyromonas gingivalis F0566 Scaffold1339, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 163560 36 100.0 29 .................................... GTCTGTACTGATATACCCTCGAGCAAGGA 163625 36 100.0 30 .................................... GAAGCTGGCATAAATAATTCACAAAAAAAA 163691 36 100.0 30 .................................... AGGAACTAAATCTTTTCCACTACAAACAGT 163757 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATATAAAGCATTTTCGATTTGTATATATATCGTTTTCATTTTGTATATAAATCGACTGCGATAAATATATAGAATGCAAGCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGTTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCGAACGAAACCGGCCGAATAAGAATGCAAGAAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAGGAATCAT # Right flank : CAGTCGCGTTTGTCGGCTGTGATTTTGCCCGGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGTACCCTTCGAATAGAGGGTAGATCCAACGCTATTGAAAAACAAATTTGGATCGATATGGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACTGGAGTCCGGCTTGGAGTCCGCTCATCAGCGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACGAGGATGCAGAAGAAAAGGGTATCGAGTTCGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 164186-164017 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260014.1 Porphyromonas gingivalis F0566 Scaffold1339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 164185 37 100.0 29 ..................................... AACTCGATACCCTTTTCTTCTGCATCCTC 164119 37 100.0 29 ..................................... CTGATGAGCGGACTCCAAGCCGGACTCCA 164053 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTGGATCTACCCTCTATTCGAAGGGTACACACAACG # Left flank : GCGAAAACCTATTATTTCAGGCCGGCCTGCATCCGTGGATTCCTGTCCGAACTGACGGACGAATTTTATAAGAATGGGAACGGTATTTTCTTGTCTAAAGAGATTATTTCCCGTATCTTTGAGTATAGGAGTATCGTTTACGGCCTTTTGCTTTCGGAGAGGCAGAACTCGGATGAGAGGATTGTGATGAACAAGCCCGAAACGGCCGAACGGATGATCAGCATTCATCAGGAGCTTACCCAAACCGTTAGAGAAGCCATCGCACTGAAGGAGCGAACGTTGAACTTTTGAGTGCGAACCGCCAGGAGCACAGGAATGATTTTTTGAGAGAAAATAGCATAAACCCGACCGTAGAGAGTCATTTTTTCAATCCTAATATCCCACTAAAATGATGATGACAGACTGTTTTTCGCCGGCTTGCAGTGGCTCCAAAGCCTTACCGTCACTCACTTTCTGTGGAATGATGACTTCTCAATCGGTTTCAAATTCGATGGGGGTAG # Right flank : ATATCGATCCAAATTTGTTTTTCAATAGCGTTGGATCTACCCTCTATTCGAAGGGTACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATCTACCCTCTATTCGAAGGGTACACACAACCGGGCAAAATCACAGCCGACAAACGCGACTGTTGGATCTACCCTCTATTCGAAGGGTACACACAACACTGTTTGTAGTGGAAAAGATTTAGTTCCTGTTGGATCTACCCTCTATTCGAAGGGTACACACAACTTTTTTTTGTGAATTATTTATGCCAGCTTCGTTGGATCTACCCTCTATTCGAAGGGTACACACAACTCCTTGCTCGAGGGTATATCAGTACAGACGTTGGATCTACCCTCTATTCGAAGGGTACACACAACATGATTCCTGATTGGTGGCTTGGGCGTTGGAATGTGCAGTAGT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGATCTACCCTCTATTCGAAGGGTACACACAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //