Array 1 175739-178451 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCP01000003.1 Salmonella enterica subsp. enterica serovar Havana strain BCW_2694 NODE_3_length_303180_cov_2.66529, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 175739 29 100.0 32 ............................. TCCTCGCCGAGCGCGTGCCGCAGGTGCTGTGG 175800 29 100.0 32 ............................. CGGTTAGCAAAATATCGGGCGGATACTGGATT 175861 29 96.6 32 ............................C CTCTCATTAAATATTTGGCGTAATCACGATCC 175922 29 100.0 32 ............................. GACTGGAATTAATTGGACCGTCTCTCACTGGT 175983 29 100.0 32 ............................. ATTTCCCAGTGGTTCACACCAGCCCCCGTCGT 176044 29 100.0 32 ............................. CAGATTTATTTCCCGCGCGGGCAGGCGCTGGA 176105 29 100.0 32 ............................. GCCCAATTAATTTTTTAGTGTCGGCCAGATAA 176166 29 100.0 32 ............................. TCTGGCCCGGTTCTCCTGTCGGTACGAAACGG 176227 29 100.0 32 ............................. AAATTGGAGACTGTGGGAGTGATCTCCATCGG 176288 29 100.0 32 ............................. GGACTCCATACCCCGTAACGTTGCCCGCTGGA 176349 29 100.0 32 ............................. TCATTAACGCGGACGCCGACGAAATCAACGTT 176410 29 100.0 32 ............................. GATTTTGATATTCACTGCCCACCGGTGGGGAT 176471 29 100.0 32 ............................. CATTCAATACGGAGGGTATCGATGGATATCAA 176532 29 100.0 32 ............................. AACTTTCGTCAAACTGGATCGAAGGGCCACTT 176593 29 100.0 32 ............................. CGAACCTTGATTCAGTAATTGCTGGCTGGTTC 176654 29 100.0 32 ............................. ACGCTGGTCAGCTTGGTGAGTTTGTTACTACT 176715 29 100.0 32 ............................. ACAATCAGGATCATTACTATTGGCTCAATATT 176776 29 96.6 32 ............................A CCCCGCCGGTCACAAAAATATAGTTCGTTGTC 176837 29 96.6 32 ............................A AAACGAAGCGCAGGATGACTCAATACATATCC 176898 29 100.0 32 ............................. ATAACAGAGGGGATCACTGACTGGGTTATCGA 176959 29 100.0 32 ............................. TATAACGTCACATTGCGGCGTAAACATATCCG 177020 29 100.0 32 ............................. GAGTGTACGAAATGTCCAGACAATCGAAATAC 177081 29 100.0 32 ............................. TCCAGTACGTGACCCACGCGCGCGGCGCCGAC 177142 29 100.0 33 ............................. ATAATTACTCACGAATTAGCTGGAGAACGGTGC 177204 29 100.0 32 ............................. AGTTCGGTCACCTGAATGACGTGCGGGAATAC 177265 29 100.0 32 ............................. GTACATCATTATCACGGCTCCCCAATATGGGG 177326 29 100.0 32 ............................. TTATTTTCAAGGCGGAGCCTTCACCCACTTCC 177387 29 100.0 32 ............................. GTATCGCCAGGGTTGTTAAGGCTGTACGCGAA 177448 29 100.0 32 ............................. GCAGTGAGTAAACCGGATCGGTTTCCCCCTGC 177509 29 100.0 32 ............................. CTCAGGCGTTTCATCGTGCGGCATCCCGGAGA 177570 29 100.0 32 ............................. GATGCATGATGCTCGTGATGGGATTCACTGGC 177631 29 100.0 32 ............................. TTTTCAGTGCATATAAAACATTTGAATCAATA 177692 29 100.0 32 ............................. ATCCGTGACGGTTACCGTGTGGGCCGGTTCGT 177753 29 100.0 32 ............................. CGAATCCCAGGAAAGTCAGTACCGCCGAAAAG 177814 29 100.0 32 ............................. CCTGCTGTAAGGCGCTTATTGCCCGTGCTGCC 177875 29 100.0 32 ............................. CCGTCCAGATTATTGGCGTCGCTTGATAGCGG 177936 29 100.0 32 ............................. AAAATTTTCGCCTCTCGTTTTAATTATTGCTA 177997 29 100.0 31 ............................. CGGTTATATCGAACATTTTTCAGACTCGTAG 178057 29 100.0 32 ............................. AAACAGGACTCCCGGCAGATGAGTCGCCTGTT 178118 29 100.0 32 ............................. GTGCACTCACTATTTGCAGGAACCGTGACCGC 178179 29 100.0 32 ............................. TGTTGATGATGTATCGGCCATCGCGCCGGGTT 178240 29 100.0 32 ............................. GCTGACTGCGGAGCTGGAATCCAGAGGGTTAT 178301 29 100.0 33 ............................. TAGTCCAGCAGTTCGTCACCCTCTCCACCCTGC 178363 29 100.0 32 ............................. GGGCAGATCGCTATATTTAGCCCGCAACTCAT 178424 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 45 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAATGCATAAATATTTAAATATCGCCTGATGCACTACTAATCTTACAGACGGCGTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGGAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAGTGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 195048-196969 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYCP01000003.1 Salmonella enterica subsp. enterica serovar Havana strain BCW_2694 NODE_3_length_303180_cov_2.66529, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 195048 29 100.0 32 ............................. CTATTGCCGCCGGGGTGATCTCCCTCTATATC 195109 29 100.0 32 ............................. GCGGAGGCGTTCATCAGAGCCAACAAAACCTC 195170 29 100.0 32 ............................. GAGCGGCATCCAGAACACCCTTCTCAGTGAGT 195231 29 100.0 32 ............................. GCCGGTGCTGAGTTACAGTGTTTTGGTGAATT 195292 29 100.0 32 ............................. TCACCAGCTCGATAATCTTCAGTTGCTACAAA 195353 29 100.0 32 ............................. CAAATGGGGCAGGACATACTTGATATGTCCAC 195414 29 100.0 32 ............................. GTTGAATGCGCCGAGCGTGGCGCTGATAGTCG 195475 29 100.0 32 ............................. TAAAACGTGTTACCCGCTGTAAACGTGTTTGA 195536 29 100.0 32 ............................. ACGCCAAATCCCTCGCAATAGAAACGCTGTGC 195597 29 100.0 32 ............................. GTTATGTCGGCCAAACAGAAATAACCGAAGAG 195658 29 100.0 32 ............................. CCGTATCGATCGACAGCCTGATTGATCGCGAA 195719 29 100.0 32 ............................. GGCGTATACAGGGTGGATTTGTATTACGCCCT 195780 29 100.0 32 ............................. CCGTTGCCAGCGTCAATGGGGCGCAGCCTGAC 195841 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 195902 29 100.0 32 ............................. CCTGCACCAAATAAACTGGCGGGCGCTCTGGT 195963 29 100.0 32 ............................. AATTTGAAGTGCTGGCAAGGCGCGCCATTGCT 196024 29 100.0 32 ............................. GGGGACTTTATAACGCTTGAGAGGTCCAGCCA 196085 29 100.0 32 ............................. TCCGCAAACAGCGCAATATTGATTTACTCGCA 196146 29 100.0 32 ............................. TTTATCTTGATGGGCTTCGCGTGCCGCACGTA 196207 29 96.6 32 ............................A TCCTGAATAATCAGAATGTTGAAAATATAAAC 196268 29 96.6 32 ......T...................... GACACCTACACATTGAACAGCAAAAAACGGGT 196329 29 100.0 32 ............................. CGGCAAACGCCAGTTCAATAGCAGTATTTGCG 196390 29 100.0 32 ............................. ACATCTCCACTTACTAAACCGGCTCGGCCTGA 196451 29 100.0 32 ............................. CGATCGCCCCTTGTTCAATGATTGTGATCATT 196512 29 100.0 32 ............................. CACAATAAACGGCATCAGCTATGGGTTGATAG 196573 29 100.0 32 ............................. ACGCTGGTAGAGAGCTCGCCGGGGCGCGATGT 196634 29 100.0 32 ............................. GCCGCGCGAGAAACAGAGCGTAAAACAGCGGT 196695 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 196756 29 100.0 33 ............................. ATTTAACGCGTTTTTTGGGTTTTCCCCTTATGC 196818 29 100.0 32 ............................. ATGAGTATCTGTACGGCGGGCGCATTCGTGGT 196879 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 196940 29 93.1 0 A...........T................ | A [196966] ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //