Array 1 21368-19550 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAMB01000028.1 Neisseria meningitidis strain Neisseria meningitidis isolate 99638, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21367 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 21301 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 21235 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 21169 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 21103 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 21037 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 20971 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 20905 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 20839 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 20773 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 20707 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 20641 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 20575 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 20509 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 20443 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 20377 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 20311 36 100.0 30 .................................... ACGAGTTTGGCTGCGCCCAAGTCTTTTGCG 20245 36 100.0 30 .................................... CCACTTTCGTGGGAATGACGGGATTTTAGG 20179 36 100.0 30 .................................... CCCATCAGCAGCACCCTGCCTTCAGACGGC 20113 36 100.0 30 .................................... GAAGGTGCGGCGGAAGGCGGCAGCAGCCAT 20047 36 100.0 30 .................................... CGCGTGTAGCTGTATTTGTCGATGGCGGCT 19981 36 100.0 30 .................................... AGCCAGATTTCGGAAAACCCTGCGGGCTTT 19915 36 100.0 30 .................................... GACATCAAACTGGGTATAGCGGTTGTGGCT 19849 36 100.0 30 .................................... ACGCCGAACTCGTCCTTCACGCGGCGGACA 19783 36 100.0 30 .................................... AAATGCGTGTGGGTGTGGTCGTCGATTTGT 19717 36 100.0 30 .................................... AAATTTGAAAATTTCTATATTTTGGTTGTG 19651 36 100.0 30 .................................... AAACCAAAAAACGCATCTTCCTGATGGCGC 19585 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 28 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //