Array 1 1511-6927 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNOW01000051.1 Allochromatium warmingii strain DSM 173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1511 27 85.7 37 T..-.G.A.................... TGGCGATTTACGCATCACAACGCTTGATGATGTGAAT 1575 28 100.0 37 ............................ CGTGTATCTATTCAGCGGTATTCTAGTCGCGCCCAAT 1640 28 100.0 36 ............................ GCGGATGCGGGACATAGAGCCGACAGTCGAGCGTGA 1704 28 100.0 36 ............................ CGACGGGAAACCGCTGTCGAATCTGTTTGAAACAAT 1768 28 100.0 35 ............................ GAGCTAATCCGCGACCTGATCGTAGCCGACATCAC 1831 28 100.0 36 ............................ GGACTCTGCTACCCCCTGCCTTGCTGTTTTTTTGCT 1895 28 100.0 36 ............................ AAGACGGACGGCTCCAGTGCTACCCCATTGCCGGAT 1959 28 100.0 36 ............................ AGGATGCGGCCCTGCTCGTTTCCCGCCAACGTTACA 2023 28 100.0 36 ............................ TAAGATGTCGGATATCTTGCATCCCATTTCTTTAGC 2087 28 100.0 37 ............................ TCGTCCAGCAAGCGTTCGGTGCGCCGACGACTTTGCT 2152 28 100.0 36 ............................ CAGACTGACAAGCCGATCAATTTTTTTATCGAGCGT 2216 28 100.0 37 ............................ GTGAGGCGAGTGAAGCGGGAGCGTTAGCCCCGATCAT 2281 28 100.0 36 ............................ TGATGCACTGATTGTCGTGGCTGGAATCGGCGCAGT 2345 28 100.0 38 ............................ TGGACTCATGGCAGCCGCCGTGTCTGACAATCGTCATC 2411 28 100.0 35 ............................ TTGATTCCGATTTGTCACCAATACCGCGCTAATCT 2474 28 100.0 35 ............................ CTGGCAGCCAAGACGAAAACCGATGGCGCTGGGGT 2537 28 100.0 37 ............................ GAGCGAAAGCCGCCCGCCGTCCTCGAAATATATCGTG 2602 28 100.0 36 ............................ ATGCGCTATGGCTAGGCCGATTGGGGCGGCCTAGCA 2666 28 100.0 36 ............................ CCGACATCGGCGCGTGCCAGTGCAGCGGATTCGACT 2730 28 100.0 37 ............................ TAGTGGCGATTCGTCCCCGTCGAGCGCGGCGGCGGCG 2795 28 100.0 36 ............................ AATCTGCCCAAAACTCGGCGTCGATTCCGTGATAGC 2859 28 100.0 37 ............................ CCTCAAGAATGGCCCGCAAACACGCGAGTTCGTCACT 2924 28 100.0 37 ............................ CCGGAGGATGTTTCCGGCGTGATCGAGCAAGATCGCT 2989 28 100.0 35 ............................ CAGATCACGGCACCCGCGCCCACTCCAATTATCAC 3052 28 100.0 37 ............................ CCGCAATGATTCGACGAAGCAACTCGATCACTACGCT 3117 28 100.0 37 ............................ CGTCAACGCTCTTGTAAAGACCGATTCCATTCGCAAG 3182 28 100.0 37 ............................ CTTGTTCCACGCTAAATCGCTCAGCTTCGCGTTTATA 3247 28 100.0 36 ............................ TCATCGTGAACCGCGAAACACGGACGACTAACCAGA 3311 28 100.0 36 ............................ CCTACGATTGCGGCTACCACACACACAATCAGAAGG 3375 28 100.0 37 ............................ GTGCCTCTGATTCTTTTTTGAGCCTGCTCGCGCTGGT 3440 28 100.0 36 ............................ CCCAGTGCGCCGCTGTTCTATCTCGCCGTAATTGCT 3504 28 100.0 36 ............................ CAATCATCTTTTTCGCCCTTGGGATGAAGATCGGCA 3568 28 96.4 36 .........A.................. TTCTGGATGTCTGAGCGCGGACGCAGGCGCGTCCAA 3632 28 100.0 37 ............................ TGGCGATTTACGCATCACAACGCTTGATGATGTGAAT 3697 28 100.0 36 ............................ CATCATGGCATGACGCAGGAGACATTTTTTAGACGG 3761 28 100.0 36 ............................ ATTCGTGACGGTGATCGGGAAATCGATAGTATTCAG 3825 28 100.0 36 ............................ TGCCGGAATTGCGAACGTAAGTGGCTCGCCTTCCGA 3889 28 100.0 36 ............................ TACTGCCAGCGGCTAACTGTGCGGTGATGCGGGTGA 3953 28 100.0 36 ............................ CTTTGTTGGGTTTTTTAATGCGACTTCCTTGTCGCT 4017 28 100.0 36 ............................ GCAGATTCTGCTCCAACCCAAGAGCGTCGCCGCCCT 4081 28 100.0 36 ............................ CTGCGTAGCGATGAATTTAGCACTCGCTTTTACGCT 4145 28 100.0 36 ............................ GCAGATTCTGCTCCAACCCAAGAGCGTCGCCGCCCT 4209 28 100.0 36 ............................ CTGTGTTGGCATATACCAGCGATGAAGCTGCGACAT 4273 28 100.0 35 ............................ TTGCGGCTGCCGTTGCGCAGCGAGACGTAAACGCG 4336 28 100.0 37 ............................ GCCAACTCGCTGTAGCAGTGACCACACCATCAGCGAT 4401 28 100.0 36 ............................ GGCATTCCATTGCCCTGAAAAAATGCGCTGTTCAAT 4465 28 100.0 37 ............................ GCCCATCTTTATTCCGGATTCGCTTCATCAGATCCAT 4530 28 100.0 36 ............................ GGCCGTTAAAGCAGTGCGGTCTGGCGCGGCCATCAT 4594 28 100.0 36 ............................ CTTGTTCTGTGCGGACATCTAAACCTGAGTCCGTGT 4658 28 100.0 36 ............................ ACAACATGCTCTATCGTCGCCCCAACAGCCGTCACT 4722 28 100.0 36 ............................ CTCTCCGTGCAGAACTCGCCTTCCCACCAGGTGAGT 4786 28 100.0 36 ............................ TGTAACTGACGCTATCGAGGAAACAGCTATAGCTGA 4850 28 100.0 36 ............................ CATGCTCTAAACGGCTCACCATCACATCGGTTTTAC 4914 28 100.0 36 ............................ ACAGCCCCTCAGCTAGATCGGTGAGTCCTGATTCAG 4978 28 100.0 37 ............................ GGCGATGACTCGAATACAGCTCGGCATCGGCGCTGGT 5043 28 100.0 37 ............................ CTGTGCTACCCGAACGCTGGCACACTGAAGCCGCGCA 5108 28 100.0 36 ............................ TCCACATCCGTCAGCGTCAACTGTACGGTCGATTGT 5172 28 100.0 36 ............................ GACCACGCTCCCCACACCTATTCAACCTGTGCGCAC 5236 28 100.0 35 ............................ CGGTGAATGAGTTTATTGCTAGGCCGTTAGTGTGG 5299 28 100.0 36 ............................ AGATGTCTTGCCAGCGCCGTTACTAACGTTCGCAAG 5363 28 100.0 37 ............................ CTCAAAAGACTCCATCGTCAGCGGCCAATATCACAGT 5428 28 100.0 37 ............................ CAATTGCGCAGATTTTACGGAACGCTTCAGCGGTACT 5493 28 100.0 36 ............................ AACTGAATGACGCGATTGAAACCGCTTGGAAAGATT 5557 28 100.0 37 ............................ ATGCCGTCTATCGCTCACGCGACGTGCGGAGATTCAA 5622 28 100.0 36 ............................ AGCCACGCCTTTTCGCGGATAGCGACCGACGCGGCT 5686 28 100.0 37 ............................ GTCATATTGGTTTTCATGCGGATGCTTCAAATAATCT 5751 28 100.0 36 ............................ CCGGCAGATGATCTACCGCTGGAAATCATACGCGAC 5815 28 100.0 35 ............................ GCCTCCCCGTCGATGCGTGGCAGCCGAAAGACAGC 5878 28 100.0 36 ............................ CGGCGCAGCGCGAATGCGCGATTTGATGGCGGATGT 5942 28 100.0 36 ............................ AGATCATCGGCACAGCAGCACGCACGCGGCGGGCCT 6006 28 100.0 35 ............................ TCGTCTTCGAGGTCGTTGCGATCCACCTCGATAGT 6069 28 100.0 36 ............................ CCGCTAACACGGTTTTTTCACTCGCAGCTAAACCCT 6133 28 100.0 35 ............................ CGCTCGCCTTTCTGTCGGTCGATCCACGCCTGCAA 6196 28 100.0 36 ............................ GGTGGAGCGTGCGGTGTTACGCGGCGGCAAGCCGCT 6260 28 100.0 36 ............................ CTGATTGCACGCATCATTCAGGCAAGCAGTCCTGAA 6324 28 100.0 35 ............................ CTGGTACGGAGGTCGCCTTCATCTCGAATAGCGTC 6387 28 100.0 37 ............................ GGGCGCGTGGCCGGCCTGATGACCCTCGCCTGACATG 6452 28 100.0 37 ............................ TTCAAAATCTCCCCTGACATGTGGGCGCAGATCGAGC 6517 28 100.0 37 ............................ ATGTTTTTTCTACAATTGTAGAATCAATCCCGCCACT 6582 28 100.0 36 ............................ CTTAATCATGCCGTCTACAAGATCAATCTCGTATTT 6646 28 100.0 36 ............................ GGAATACCGCGCCGCGAATGGCGACCTGCTAGGCAT 6710 28 100.0 35 ............................ CTGGTAGTGTCGAGGATGGGGTCGCGCATCTACGC 6773 28 100.0 35 ............................ CTGCTCGATTCCGCACGCATCGGCGACGTCGGCGC 6836 28 100.0 36 ............................ ACCCATAGGCGACGCTCTGGGATCGCTGCAACACAA 6900 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 85 28 99.8 36 CTCATAACCCCTCATGGGGATTCGGAAC # Left flank : TCCCCTCAGCCTGTAATGCTGCGCGGATGTGATCCCGTAGCTTGGCGGTGAGTGCAGATGCCGCCGGTTCGCGCTTGATCCATTGCTTGAGCGTTCGATGTGGTTCGATGAATACCAGCCAATCTACCGCCTGACCTTGATAGCCCTCCCCCGCCGCGCACTGGCTGCTACAGCCGATCATTACCTCGATCTCATCGGTGTTGTACTCGATGAACCAGCCCCAGTCCTCACTGAGCGGATAGCTGGTGTAGAGGTCAGCCTGTGCCAGTGCTTGGGCAAGCCAGAGTGCTAACTCGAACCCATAGACACCGGGGTTGACTTGGCAATCTTCAGGGGGGACGGGGAGAAAGCGGGCGCTGGTGAAGGTCAGTTGAATCATAGAATCACCTCGTCGCTGGTCAGGACAGCTAAAGGGGATGAGGGGCTGCGGTGTGAGCGGTGGGAGTTGGTGTTGGCGGAGGTGGAGTATGTTTCAGGAAAAACTGCCGAAGATTAGATGT # Right flank : CCCTCGAAATTACGAGATTTTCTTGATTCAAGATCTGTGGAAATTTGAATAAATGGATATGGAACATTGGTGTTTCAACGTCGGAGACCCATAGGGAATACTTCAGAGAAGGTAGAAGTTAAAGTGGTTACAAAACTCCAAAATCAGTTTTGTGCCATGTATCCTCCTCTCGACTTACTTCTCCCTTTCCAGATTCAGACTTGATAAAGTGAGTAACCTGCACATTCTTTCGATTTGCTGCCGTAATCTCAGTGAGACGGTCTTTTGGAACCAATTTTTCACTCAACTCACGACGTAGGCGGACAGCTTCAGCTTCGGTAATATCTCCCGAAAATACAGAATACTGCTCGTGGTTGAGATACCGTCGCAAGATCTTTCTGAAGATACCTGTTCGTTTCGCTTCAACATCGTAAGTGACAAGCATGAACATACTCAAGGCCGCCGCCTAAAGGATTCATACTCGGCCACGTCTAATACCTGTCGTTCTAGCCCGAGTGCTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAACCCCTCATGGGGATTCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 45315-45576 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNOW01000009.1 Allochromatium warmingii strain DSM 173, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 45315 37 100.0 38 ..................................... TGCGCAATGGCTACCGGACGGCAAGCGCGTTGGGCAGT 45390 37 100.0 38 ..................................... AGCGTAGGAGCTGCGGGACTAGCCAGCACGGCGGCAGT 45465 37 100.0 39 ..................................... CCATAGCGCCGATTCTTTTCGAGCAGCATATCGCGGAGT 45541 36 86.5 0 ...........................-..AAC...T | ========== ====== ====== ====== ===================================== ======================================= ================== 4 37 96.6 39 GTCGCGACCCACAATCCACTACAACAAGGATTGAAAC # Left flank : TCGGCGATGGCCGCCATCACGCTGATCGGCTGCTGGGTGCTGGCGGCGCTGTCGAGATAAATCAGCGGCTGGCCAGCGGTGGGCGCAGTCAGAATCGGGAACTGGGCGCGGATTGCAGCAATATCGAGCATGGGCGTGGTGTTGGCTGGCGGTCAAGAATCAGAAATTTGAGTATAACAGTTGGGCTATGGGGATAGATCGGGCGGTCAAAATGGTGTTGTTTGGTGGCGCGGATGTTGGGTATGATCGGCAGCGGTCGGTTTCTAGCTTGTCCCGCTGATGCTTGCGCTGTGACGACTGCTGAGACAAAAATATTGGCGTCTCGCCGAGTGGTTGTTATAAGTCTTTGATCTAACAGCAGAAAAAGGCGTTTTTTCGATGTTAGCAGTGGCTGAAAACAGTCGTTTTGAGGGCAAAATGGGGGAAAAAGTGAGCAAAAAGAGGTCGGCTAAAAAATGCTATCCCTTTGATCTAAAAGGGATTATGCTGCAAATGCAGGG # Right flank : TCGCAATAAAAAAACCGGCTCTTAGGCCGGTTTTTTTTATGACAAAGCTCCCGCTTCGTCATCAGAGAAATCAACCCAATTCAACTCACCACCCCCACCCCACGCCGATAGGCTTGCGAGCGCCGATCACCGCCACGCGGACGCGGCAGAGCGCGTCGATTGAGCAGGCTTTCGATTTCCTGACAAAATTCCGGATTGCCAAGCACCCAAGCTTTATTCGTCGCATCACGAATGCGCTTGATCCATCCTTCATCGAGCGGGCGCATCGCTTGCGCGGCATAATATTCACGGCGTGCTTTAGCACTGCGACCGAGTCGTGCGTATTCACGATGCGGTGTAAGCAGTCGATCTTCGATCCCCTCGGCATTGCTGCCATAGCTCGACCAACCATATTCTGACGGTAGCGTCACGAGACTGGCCCGCACCGGATTAGACTCAATATAGTGCGCAACCTGAAGTAAAAAAGCCGCGTTCGGATCGACCAGTGTGGCGCGATAACG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGACCCACAATCCACTACAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //