Array 1 541870-540438 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLG010000001.1 Aerococcus urinae isolate Au-13-B13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 541869 29 100.0 32 ............................. ATCCATTAGTCGTTTAAATTCGTCAAGAGAAA 541808 29 100.0 32 ............................. CACACTTGCCATAATGACAAGTAAGAAATCGA 541747 29 100.0 32 ............................. GATTACACATTATTAGCAATCATAAGCATTTA 541686 29 100.0 32 ............................. AGTGCTAACCAGGGTCATTAAAGCTGGTGCCA 541625 29 100.0 32 ............................. TAGGTTTCTCCCACCAATTTCAATATTTTGCG 541564 29 100.0 32 ............................. GCTACCGATAACAAGCAGCACTACAAGGACTA 541503 29 96.6 32 ............................C GGAAACAAAAAAGGCTCCTGCCTCGTTGGCAC 541442 29 100.0 32 ............................. ATATTTGTTCACAACCAGCGTCCTGAAAAGGG 541381 29 100.0 32 ............................. AAGCCCCTCTGAGAGCTTGTCAAAGCCTTTCT 541320 29 96.6 32 ............................A GCGACTTTGAAAACAATTAAAGAACGATCTGA 541259 29 100.0 32 ............................. AAGGCCTTGTGGACAAGAGAAGAATCAGTTAG 541198 29 100.0 32 ............................. AAAGACCACTAGGGCAATTCCTACCCTTTGCC 541137 29 100.0 32 ............................. CAATCTCTTGCATGATCGTATAGGTAGTCCAA 541076 29 96.6 32 ............................C AAAAGCGGCAATAAATTTCTCCCAATCATCTA 541015 29 100.0 32 ............................. GACAGGATCGCTGCCAAAGCTTCACAAAATAC 540954 29 100.0 32 ............................. TCATCAAAAACTCTCTCTGACTTTTAAATTTT 540893 29 100.0 32 ............................. TTTGTTAACCTCAACAAAATTGGGCTTAGGCA 540832 29 100.0 32 ............................. ACTGACTCTATGCACGACTGGCTTGAAAGAAA 540771 29 100.0 32 ............................. GAAAAAGGACTCCGGCGTTAATAACATTTTTA 540710 29 96.6 32 ............................C TACCCTCACTAAGGATAGCCCACAAGCCTACA 540649 29 100.0 32 ............................. TTTTAGCGATCCAGTTAGCCCCTCCAATGATC 540588 29 100.0 32 ............................. AAAAGGAAAAATCACCTTGTTATAACTAATAA 540527 29 100.0 32 ............................. GGGCCGGCAGTACAGGATCACTATTGATTTCT 540466 29 75.9 0 ....................T.AA.ATTA | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.4 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : ATGAAAGATTCGATTATCGAAGTTGGAGCACTTGCTATAAAAAATGGAGAAATTGTTAAAGAATTTGAATGTCTTATAAATTATGAGGGGATTTTATCTAATGAAATCATTTCGTTAACAGGCATTGATGATCAACTATTGAAAAAAGAAGGCCAGGACTTAGAAAAGGTTCTGCAAGATTTTAAAACCTTTATTGGTGAGGAAGATCTTGTTGGCTATAATATCTCCTTTGATATAAAATTTATTAATTATTATTTAAAGAAGCTAAATCTGCCAAAATTAAATAATAAAAGTGTTGATTTAATGAATTTCGTAAAAAAAGAAAAATTGTTTTTACCTAATTATAAATTAGAATCAGCCTTGTCAGCTTATGATATTGACGAAGAAGTTCCTCATAGAGCTTTAGGTGATGTGCATTTGATCTATCGGTTATCGTTGAAAGTAAATAAATTTATAAAATTTATGAATCGAAAAACGCATAATTAAAGGGATCCTTTAGT # Right flank : ATGTGATTGAGTTACTGTGCAATTTATTATTTGAATCATCGATACAAATGCTATCGTCCTTTTTGATGTATAATCAGCTTGAAACTTACAGTGTAAGAAAGGAGCAAACTATGAAGAGATCTTATCCGGCCCTTTTCTATTTTGATAAAGAATTTGACGGCTATTACATAGCATTTCCTGATCTGGACAACGGCGCTACTCAAGGAGAAAATATTTCTGATGCTTTATATATGGCCTCTGAATATTTAGGCCTTGTTTTAGCGGATGCGCTCGAAAGTAACGAAGAGATCCCTCAGCCGTCCAATATTAATGATTTATCTTTGATTGAAAATTATCCCTATAAAGAGGATAGTAATTGGACGGACGACTATGATATGGAAAGATCATTTATATCGATGGTGATGACGGATGTTTCTGAGTATTTAAATCTTGATGATTTAGTTGATATCAGCCTAAGTATCCCTCGATGGGCTGAAAGTTTAGCAGAGGGGGATGGATTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 560983-560406 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHLG010000001.1 Aerococcus urinae isolate Au-13-B13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 560982 28 100.0 33 ............................ CTGCTTGAGCAATGGTTACAGATGGAAAAATAT 560921 28 100.0 33 ............................ CGGTGTCACCAATATCTACATTTTCTGGCAGGT 560860 28 100.0 33 ............................ TAGGTTTTTATGTAGGTGACGATTTATATCAAG 560799 28 100.0 33 ............................ TATTAGAAAGGAATTAAGGAATGACACCAGGAG 560738 28 100.0 33 ............................ CAGACCTGTCTAGCTTTAATTAGTGAGTTGATC 560677 28 100.0 33 ............................ TCGTCAATGTCGTTTGGCTCATCAGCAATAAAG 560616 28 100.0 33 ............................ CTGATGTATATAACAATGAAACCACAATTCCTA 560555 28 100.0 33 ............................ TGAATTACCTATTAACTCTTGAAATCCAATACG 560494 28 100.0 33 ............................ GGACCGCTAAGATCCCCATTTTGCTATACCTTA 560433 28 89.3 0 ........................G.AA | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.9 33 CTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : ACAAATTGCTATGTGTTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACATGATCTCTGTGTTTACTGGAAGGTTGGCCGTGGTAATCTGATCAAATTACAAATTTACCGGATTATTGAGTCAGCGTATGACTTTGGCCGGCGTGACAATGCCTTATTATGTCCGTACTGTCAGGAACAGCTGGGCTCCTTGAGTGAACATAAGGGCCGGCCGTGTTATTTCTTGCATCGGGGGCGAGTACAGACCAAACGTTTGCAGCGTTATAAATGCTAGCCAAAACTGTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTAGGAATTACAAAGCTTGAAGTTATAGGGATCTTTTAGT # Right flank : TCGAAATGGTGCTTTACTTACAAGCGTATTATATGATGATAGAAAGTAGGTAAGAATTAATGACAGAAGATAAGAAAAGACCTCGTGGCCGCCCAGCAACAGGGCGGAAGCGCTATAAAACTTTGAATATGAAATTCACGGAAGAAGAAAGAATGTACTTAAAAAATCAAGCAAAAATACATGATCTTACCTTATCTGACTATTTTCTAACAATAGCCAAGGAATATGAAAAGAAGCATTAGCTGTTAGATTTTTCCGCGCTTATTTGGAAATTGATAAAATTTGATTCAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGGCTTGATCATTTTTTCTTTTGAAATCTTCAGCTCCAATTATCCAAGCTTAGTAATGAACATGCTATAATATAAAAGTAAAATAAGTTTATCATCCTTTCCTGTGCTAGGGAGGAGATTTAAAGCAAATAGGCATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //