Array 1 30415-29840 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWWV01000013.1 Pasteurella testudinis DSM 23072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 30414 28 100.0 33 ............................ TCACAAACCAATGAAGAGGTAACAGCATGAGCG 30353 28 100.0 33 ............................ CAACGCATTCACAACAAACACATACTGAGCAAA 30292 28 100.0 33 ............................ CAGTTGGGTTAAAAAATAGACAAAGTGTTTCCA 30231 28 96.4 33 .......................G.... TTCTCGCCCTGTGTCAAGCCAAAGGGAAATATA 30170 28 100.0 33 ............................ TTCAGAAATCGGACTAGTTCGGAAAGTGAACTA 30109 28 100.0 33 ............................ CTTCAGACGCACGATTAGCTATGCGACTAGCCT 30048 28 100.0 33 ............................ CTTTAAGCAGTCACCCGATTTTTTCGCAACTGT 29987 28 100.0 33 ............................ TATCAGCTGCCCACAAACCACGATTACCGGTGA 29926 28 100.0 31 ............................ TACTATGAAGACCACATCGCCACCGAGCAGC 29867 28 85.7 0 ......G.......CA.......G.... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.2 33 GTTTTCTCCACGCATGTGGAGGTATTTC # Left flank : TATGTATTGATTTGGCATTTTCCTTAACGAAAGAAATGGCAGGAATGTACGATAAGCATCAGGTTTCGTCTGCTTTTAGAACGCGTGTAATTGAATCTGAGTTATTAACGCAAATAGGATTGGATATCATTGAGTTACTAGGGGGACGAAAAAATGCTGGTCGTACTAGCAAATGATCTACCTCCAGCAGTTCGTGGGCGTATGAAATTATGGTTTATTGAACCACGTCCTAATGTTTTTGTTTCGGGAATAAAAGATTCTGTAGCTAAGACTGTTACCGAATATCTATTAGGACATTGTCCAATAGAAAGTGGATTGATTATTTTTAGAAAAATTCCCCAAGCTCCAGGTTATGAGATTCGTACTCTAGGTCATACTAAGAGGGAGCTAATTAGCATTTCTGGTTTACAATTAGTGATCGAAAAATTTATTGAATAGCTTTATAGCCCGTAATCCCAAAATATAGTGTTAAAAGCTATGCTCTTTAACAATATAATGGT # Right flank : GCATTTCTGCAAATATCAACTATTTGAGGTGCTATTTTTCTATGAAAATAGTAGATATTTTAAATATATGACATACTTTAATGATTTTATCTATAAACAAAATAAACCCCCACCATCGCCACCAAATACACAATTCCTGCCCACGCCAAATACGTCAGCCAGCCTTTTTGTTGTTTATCCTGGCGTACGAGGCTAAAGTTAAGCCAAGCAAACACTGGGGCAGAGATGAAGGAGGCGGTCATGGCGAAGGGGATCATTTTGCCGATGGCGCTGCTGAAAAACTGAATCACGATAAAGGCGGAGAGGGTGGTGAACAGCATGGAGTAGCGCAGGGCTTTGTCATGATGTGCGCTGACCGCACTTGGTGTTGCGCTTTGGCGTAATAAAGCGACGGTTTGCTGATTGCAGCGTGAGTAGCCGTCCACGGCGACGATGGTGGTGCCGTAAATGCAGATAAAGGCGACCAACGCCATAAACCAGCGTGTCCATTCGCCGATGCT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGCATGTGGAGGTATTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 124257-122783 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWWV01000013.1 Pasteurella testudinis DSM 23072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 124256 28 100.0 32 ............................ TCAAACACATATCCGGTAACAACAACCTCTCT 124196 28 100.0 32 ............................ GCAGCCGTGCGAGGACGTGAGGAAATGGCGGA 124136 28 100.0 32 ............................ AACCGGAAATTAAGTGAAGCCAAGCGCGCTAA 124076 28 100.0 32 ............................ TTGCTTGCCCCGCAAATTAGACGGTCGAGAAG 124016 28 100.0 32 ............................ GACAATCAAAAATCAAGCGATTGATCTCAAAA 123956 28 100.0 32 ............................ ATCCGGACACCGGGCTTTGCTGTGATTTAGCA 123896 28 100.0 32 ............................ AACGTGGTGGCGGTAGTATGGATGGCGACAGC 123836 28 100.0 32 ............................ AGCATCACCTATCATTAACGCCGTTGGGCGGT 123776 28 100.0 33 ............................ GTCACAGATATGGTCAGTGTAGGGAATGGCGCC 123715 28 100.0 33 ............................ TCTTGATTTTCCATGTTTCCCCCTTGGAATTAC 123654 28 100.0 33 ............................ TCCAGCCTCTTTAATGGTGCCTTGCGTTGAACC 123593 28 100.0 32 ............................ GTCCTGAGATTGAAGTAATTCCCCTTGTCATC 123533 28 100.0 32 ............................ GGCATTTTTAGCCCGTCTGATGGGCTATTACA 123473 28 100.0 32 ............................ GAAACACAATCCGAAATGGATAGAAAAACATT 123413 28 100.0 32 ............................ ATGAAACTGTAAGTCGTGGGATAGGGGCTCTT 123353 28 100.0 33 ............................ CAACGGTTTAATCAATCCACGCTCTAAAAGGTC 123292 28 100.0 32 ............................ TTGTAAGTATCTTGATTTTAATTTCTGCTCAA 123232 28 100.0 33 ............................ CGTTTAAGGCACCCGATTTTTATCAATATCCGC 123171 28 100.0 32 ............................ TGACGCAGTGGTGATTCGGGAAAGCCTTGCAG 123111 28 100.0 32 ............................ ACCGACCCGAAGTTTTGTCACGTCGGGGTTTA 123051 28 96.4 32 ...................A........ TGATCGCCTGAATGCGTACGACTGTTATTAAC 122991 28 100.0 32 ............................ TGAAAGACGATAGTGGAATTAAGTAATTTATT 122931 28 89.3 33 .....CT.....A............... GTCTTGCAGAGCTTGAAGCAGAAAATGCCTTAC 122870 28 89.3 32 .....CT.....A............... ACTTGCCCCAAATTTTGAAAGCGATAATGTTC 122810 28 82.1 0 .....CT..T..A............G.. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.3 32 GTTAGTCATCACGCAGATGGTTTAGAAA # Left flank : TATGTTTGATGTAGTGAAACAACTGGCGTTGAGCAATAACGCCAGTGGAGAATAATCCACCGGTGTGGTGGGTAAAAGAAAGTGATATTTTTCTAAGCTACTGTATCAGTAGAAGGATAGTATATATGAAAACGCATAGTATAAATACATAAGAATATTTAATAAAGTGATATTGGGTATTTTATTTTGGTGTGTGGTAGGTTAATATCTGTTTTAACCTAGCGTAGATACCGACTGTGGTAGTGTCGGTCACTCACAACGGGTTCGGATATGATCACGTTGTAGGTGATATAGACGTTAAAGTGCGGTTAGATTGCCAATTTGACCGCACTTACATCAAACTTTGGCATGATCTTTTGAATTCAACAAACCTATTTTTGGACGTTCTTTTAAAATATATTATTTATCAACTGGTTAGGTTTTATGTAAAAACAATTGGGTAATATCGGATTTTATCTCTAGCCCATTGATTTATTTGTTTTTTCTATGATAATGTTCTA # Right flank : TATTATAAAGGGGTGGTGATTATTGTTTGTCAGTCATCGGTCGATGTCATCATAAAAAATCAAAGTGCGGTTTAAAATGGATAACCACACGTTTGATTTTAGATGATGATTGAGTGTTTAAACCGGTTATTTCAATAACCCCGATGCTTTTAAGGCGGCGGTGATGATCGGTTGGGCTTGTTCGCTCAAGACCGTCAACGGCAGGCGTAGGAAAGGATCGCTGATTAAGCCGATTTTGTGGCACGCCCATTTTACCGGAATCGGGTTGGATTCGACAAATAAGTCTTTGTGCAATGGCATTAAGCGGTTGTTGATTTCATCGGCTTGGGCAAAATCGCCGTTAAGGGCGAAGCGACACATTTTCGCCATATCGGCGGCGGCAACATTGTTGGTGACGGAAATCACGCCTTCGCCACCGGCTTTAATCGCGTCCAGTCCGGTTGCATCGTCACCACTTAACACGATAAAGTCTTTGCCTGCCAATTCTTTGATTTGGCCGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTCATCACGCAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //