Array 1 102605-102816 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEMK01000007.1 Escherichia coli strain OLC999 D3509_Cont0007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102605 29 100.0 32 ............................. CTATACGAAGTTATTAGGTCCGAAGAGGAGTT 102666 29 100.0 32 ............................. TTTACGTGTTATCGCGCACCGGCGACGGTGTG 102727 29 93.1 32 .........G..C................ ATTCAGCAAATAGCGAATTTCATAAATATGAT 102788 29 86.2 0 .T.......G..C...............A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATATGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128431-129557 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEMK01000007.1 Escherichia coli strain OLC999 D3509_Cont0007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128431 29 100.0 32 ............................. CTCGCGTATACTCTCTGCCAACGTCTCCAGAT 128492 29 100.0 32 ............................. GCGGGATTATCGGCACTGACGTCGGCGCTGTG 128553 29 100.0 32 ............................. GGTCGCTTCCATATATGAACCTTGAGGATTAG 128614 29 100.0 32 ............................. GTTCCATGCACTGCCCGCAGTGTCAGCCGTAC 128675 29 100.0 32 ............................. GTAAATCATACGTTGGCATCAGTATTTTTCTC 128736 29 100.0 32 ............................. ACTCCGCGCCATTTGAGAATTCTCAGTTCTGC 128797 29 100.0 32 ............................. CTACTGCTGTCAGACGGCAGGGCAAAACAGCG 128858 29 100.0 32 ............................. GACGTGCGGATGCTGTTTCTGGTTTTACCTCC 128919 29 100.0 32 ............................. TTTTTTCTCAGCGTCTGGCAGAGCTAATCGCC 128980 29 100.0 32 ............................. GTGTCAAATTTCATGTAATTGATGATCCAGCT 129041 29 100.0 32 ............................. GGTATTTCTCGTTAACACGGTCGTATCAAAAC 129102 29 100.0 32 ............................. AGGGGTTGCAACCATAGCCCTTAGTTGATTGC 129163 29 100.0 32 ............................. CCAGTGGATTTTAATAAACTCTCCAGCGAGCA 129224 29 100.0 32 ............................. TTCGCCACGTCAGGCGTGATTTCCTGCACTGA 129285 29 96.6 32 ...........................A. GGCGCGTCTGCGCCCGCTAGGACTCGTGTCAA 129346 29 100.0 32 ............................. GGAGTTCAGACATAGGTGGAATGATGGACTAC 129407 29 93.1 32 ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 129468 29 93.1 32 .................A........T.. GCAACGACGGTGAGATTTCACGCCTGACGCTG 129529 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGTTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTGAGA # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGTTCCTTCACTAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTATGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //