Array 1 315008-315244 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSH01000002.1 Paenibacillus sp. J2TS4 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 315008 32 100.0 36 ................................ CGTACATCATCATTGTTTTGTTAGTTTTGTTTAAAT 315076 32 100.0 38 ................................ AGGTCACGCCAGCGCCGCATGGGTAACGCGATTGTCGA 315146 32 100.0 35 ................................ GTCTCTCATAATCATCTACTATTAAGCTATCGCGG 315213 32 93.8 0 ..........G................A.... | ========== ====== ====== ====== ================================ ====================================== ================== 4 32 98.5 37 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GAAAGCCTGCAATTGTACTGCCTTTTAATCCGTTTGTACCGGTTGCTGCAGCAAAGCTGCCAAAATACATCTTTCTTCTTGCTTCGATGGAGAATGGGGTGGTTTGGTACGGAAATTCATGTAGGATCGCAGGCATTTTCTCATTACAGCTTGTTTCGATAAGGAATCCATGTATAATTGCATGAATTCGTATTTCGTTTCGCAAGGGGAGTCGCTAGCCAACAACCCATCTCATCTCAAGTATGGACTAGTAAATGCGTACGCACAAAAAATACATGCCGTTCTCCACCAAACCGGGAAAATCGGTCAAATCACTAAATTCAGCTCCCCTAGGTGCGAACCCTAAGCTCACATGAAAACCCCGGGACATTCGCACCAGCGTAGCGACGCGGGTTTCGGGGATTTTACGAAAAAATACGGTCTGAAATAAGACGCAAAAATGGGGATTCGCACTTTCGGGCTCACGGGCCCTTGTGGTATGCTGTATTTGAGACTCCGCA # Right flank : TATGGGATACTTGTTGCATTCGGCCATAAGTCGCACTCTACGTGTGGCAAGGGATGAGGGGATTATAATGGTGTCGATTGAACTGTTTCATTATTATGAGCGGGAGACAGGGCCTTTTCGCAATCTATCGGATTTAAGTTTGGACGAGGCGAGGGACGTTCTCCATGAGCTTCGACAATCAGGAGAGGTTTTTTCCAGTCAACGCTCGGACGATTATATGGAAATCCGGCGTGATCTGGAGGATAGAGCGAGAGAGCTGTTTATTAGAAAGGGCGGTCAACCTATTCGCAAGCGTCCTCATTATATGACCTTGGGCGAATGCCCCTGGCTTAAGGGCTGGTATCGGGAAGGGCGGCAATTAATAATTCCTATAGAACAATTTGATGCTAAAGCCGTCAGTTTCACTTATGGGGATCTTTTTCCGACGATGAGATACAATGACGACAGACCCTATCGCAAGCAAGTCTATACTATGCAAGAAATAAGGGATATCATAGCCG # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 174956-176260 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSH01000013.1 Paenibacillus sp. J2TS4 sequence13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 174956 32 100.0 30 ................................ TTCAACCAGCTGCAGGTCATTAGCCTGGAG 175018 32 100.0 32 ................................ CTTGTCATCAACATTTGTCCGCGAATAGCCAT 175082 32 100.0 34 ................................ AGATAGATGCGAGTGGAAATGGATCTCATATAGT 175148 32 100.0 35 ................................ TTCTATGTCCTCTATCTGTTTCACTTTTTCTTTCT 175215 32 100.0 36 ................................ ATTGTGATGGTCTTAAGGCCGACTCTGACCGTTTAG 175283 32 100.0 35 ................................ GCTTAACCCCTTCGACCAACGGAATCTCAAATATC 175350 32 100.0 37 ................................ TATGAAGAAACCATCCTCATCATCATCATCAAACATC 175419 32 100.0 36 ................................ CAAGTTTGTCTAATCGTTCATCCGACAGGATTACCA 175487 32 100.0 36 ................................ GCCTATGGTTGAGCTAATTCCCGAAAATCAGAATTA 175555 32 100.0 37 ................................ GACTTTAAACCCTCCAGACGATCCCGGAGCAAGTGGA 175624 32 100.0 35 ................................ AAACGTCAGCCCAAAGCGGGCTTGGATGTGAAAAT 175691 32 100.0 38 ................................ CCCCTTGGGTTATGCTTATGTGGTAACGGTTGTGGGAC 175761 32 100.0 37 ................................ GAAGTGAAACTATAAGGTCGAGATAATTAATCCACAG 175830 32 100.0 38 ................................ ATCGTAAAGAGAAGTCAGGCTTACAAGGTTTAATGCCG 175900 32 100.0 34 ................................ GCCTATGGTTGAGCTAATTCCCGAAAATCAGAAT 175966 32 100.0 36 ................................ ATTGCATGGGCAAACTCCATAGTTTCGTTCTGCGTG 176034 32 100.0 36 ................................ ATCAAGCGGTACATGTTGACCGATGATGAACAGCGC 176102 32 100.0 29 ................................ TATGTCCCAAGATGCCTTGTTATTGCCTT 176163 32 100.0 34 ................................ TCCCAATACACATGAAAGTCCGCTATGTAGGTGA 176229 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 20 32 100.0 36 GTCTCCCTCTACGTGAGGGAGTGGATTGAAAT # Left flank : CCATGATCTGGATGTCTATCCCCCATTTATGTGGAGGGGATAGCTTTGTTAGTCCTTGTAACCTACGATGTGGCGATTACCACTGACGGCGGAGCAGCCAGATTGCGAAGAGTGGCCAAGATCTGTGAGCAATATGGCGTTCGCGTTCAAAATTCTGTATTTGAATGCATCGTGGATGCGACCCAAAAAAAGAGGTTGGAAATGGACCTGATGAAGGTGATTGACGAGCAGGTTGACAGTATTCGGATCTACCAGTTGGGTAATCAATATCGCAATAAAGTAAAGCATATCGGCGCCAAGGAAACGATCAATGTGGAAGACCCGCTTATCTTTTAATGGTGCTGGAAAACCTGAAGTAAACATGAAAACCCGGGGAGGTTTTCCGGTATTTATGACTGATTTAGTCGTTTTTGTTAACTGAAAATAGAAAATATACATTTAATTATTAGGATTAACACAATATCTTGTGTGTGGATATTAAGAGTGCGCAAGATATTGCG # Right flank : TAAGTAAACAATAGCCCCACCTGTTCAACGAGATGAGGGCTAAGTTATGCTTTTTTATGATTTAAATACTTGGCAAATTAGTGGCAGTGATGCTGACCAAGCATCAGCTTGTCCAGATCTTCGGGTTCTGTTGGATCAGATAGTTGGGGAAGTCGCTCAAATAAATACTTCAGGTATTCGAACGGATTTAGTCCGTTTTCTTTCGCTGTCTCAATCACACTGTAGATTGTCGCGCTTGCTTTTGCACCGCGTGGAGTATTCGCAAAAAGCCAATTCTTTCTTCCAATCACAAAAGGCTTGATGGAACGCTCGCTTCGGTTGTTGTTGATCTCCAGCCGACCGTCCTTCAAGAATGCCGTTAGCTTATCACTGGTTCAGGCTGTAGGTGATAGCTTTTCCAAGCTTGCTTCTCGGTAAGGTACGGGATCGTTGATGACGAAGCCACTCCAAATAAGCATCCAGAACAGGGCGACTTCGCTCTTCACGGATGGTAAAGCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTACGTGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 480294-480848 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSH01000003.1 Paenibacillus sp. J2TS4 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================================================================================================================================================================================= ================== 480294 32 84.8 215 .........-.A......A..A.........C. ACTATCCCGGGCTACATGATTTCATGGCGTTTTCCATACGCGAGGGAAGTGCGAACCTCAAGCTCCCATGAAAATCCCGGGAGATTCGCACCGGCGTAACGACGCGGGTTTCGGGGATTTTACGGAATAAAATGACCAGATACAGCGCTTGAAAATGGGGATTCGCACTTTTGAGCTTGCGAGCCCTTGTGGTATGCTGGGTTTGAGACCCCGCA C [480300] 480542 33 100.0 36 ................................. TCAGGTAAAGTTAAACAGCGCTCGGTATTTATAAGA 480611 33 100.0 36 ................................. AATCCGTGCTTTCAGCGCCTCAAGCAGCTTATCTTG 480680 33 97.0 33 ................................T ATCATGAAATATGAAATGGAGAACTTACCTTGG 480746 33 100.0 37 ................................. TTCTTTGTCCAGTGTTTTCCGCCGCCTTTTTTACCAA 480816 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= ======================================================================================================================================================================================================================= ================== 6 33 96.5 72 GTCGCATCCTACGTGGATGCGTGGATTGAAATC # Left flank : AGAAGATGAACAGGACGTGACCGTTAAGACTCAATCACGTCATACGCTGTTCCGGGCAGATAGAAGCATCGCCCTAGCTTCCACCTGTCCGGCGCCGCTGGTTATTTACTTTTTTGGTCATCTGACTTTTCATTTTTTGATTGGAATTCGGACCGAAGTCTTTATTTTTGTTTTGGTCCTGGGCTTGCTTTTTTTGTGCCAGCTTGTTGCGTACGGCTTCCGCCAGGCTCATTTTTTTCGGCTCCGCGCTGGAGCCTGCAGCGTCTTGGGAGCTTTCCTGGTTTGGGGAATTAGTCGAGTCGGTCATGGTTTATTACCTTCCTTGTTAATTCGTCATTATAATACTTCTCGAAATTATTGTAATCATTTTACGCTTAACGATCAACCATTAGATTCGCTGGATAGGTATTGATATAATAGGATGGAGTGGACCTTTAGTCATACAGGAAAGAATAAGGATTTGTCATGCCTTCACGTGGTGCTGTTTACTATACGGACAT # Right flank : GTAGACGATCCGCAGTTTGAAATGGATCTGATGCAGGAGTCGCACTCCATGTGAGTGTTGATTGAAAATCAGCATGGGATTTATGATTTTATGGCGTTTTCCATACGCAAGGAAAGTGCGAACCTCAAGCTCCCATGAAAATCCCGGGAGATTCGCACCTGCGTAACCGTGCGGGTTTTAAGCATTCTTCTGGAAAAAGTCACCTGAAAAGATGCACGAAAATTGGGATTCGCACTTTTGAGCTTGCGAACCCTTGTGGTATGCTAGGTTTGAGACCCCGCTGTCGCATCCTATGTGGATGCGTGGATTGAAATATAAAACCGACATGCTTTTGTGCAGCTCCACGTAAGTCAGTCGCATCCTATGTGGATGCGTGGATTGAAATCGATCATATGGTATCCAGTGATTACATGGAAAAGTCGCATCCTATGTGTATGCGTGGATTGAAACGCAGGAATAGGGCTGCTGAATTGTCGGCATTAAAGATATAAAGCTCATGG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGTGGATGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.90,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 481130-481297 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSH01000003.1 Paenibacillus sp. J2TS4 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 481130 32 100.0 39 ................................ ATAAAACCGACATGCTTTTGTGCAGCTCCACGTAAGTCA 481201 32 100.0 33 ................................ CGATCATATGGTATCCAGTGATTACATGGAAAA 481266 32 93.8 0 ...............T...............C | ========== ====== ====== ====== ================================ ======================================= ================== 3 32 97.9 36 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : CGTGGATTGAAATCAATCCGTGCTTTCAGCGCCTCAAGCAGCTTATCTTGGTCGCATCCTACGTGGATGCGTGGATTGAAATTATCATGAAATATGAAATGGAGAACTTACCTTGGGTCGCATCCTACGTGGATGCGTGGATTGAAATCTTCTTTGTCCAGTGTTTTCCGCCGCCTTTTTTACCAAGTCGCATCCTACGTGGATGCGTGGATTGAAATGTAGACGATCCGCAGTTTGAAATGGATCTGATGCAGGAGTCGCACTCCATGTGAGTGTTGATTGAAAATCAGCATGGGATTTATGATTTTATGGCGTTTTCCATACGCAAGGAAAGTGCGAACCTCAAGCTCCCATGAAAATCCCGGGAGATTCGCACCTGCGTAACCGTGCGGGTTTTAAGCATTCTTCTGGAAAAAGTCACCTGAAAAGATGCACGAAAATTGGGATTCGCACTTTTGAGCTTGCGAACCCTTGTGGTATGCTAGGTTTGAGACCCCGCT # Right flank : CGCAGGAATAGGGCTGCTGAATTGTCGGCATTAAAGATATAAAGCTCATGGAAAGCCTTCGGAGGCACTTTCCTTTGGACGAACGACAGCTTTCTTTAGTGCCCTATATACATAGTAATCAAATTTTAGGAGGAACCTTAAATGGAAAAGTCTATTTTTGATTTAGTTGTCAACGGTGCAGACGGACAGCCGATTTCAATGGACAAGTATAAAGGACGGGTGCTGCTCATCGTCAACGTCGCCTCTCAATGCGGATTTACACCACAATACGAAGCGCTGGAGAAGCTGCACCGTGCCTACAAGGAACGGGGATTGACCGTGCTGGCGTTTCCTTCCAATGATTTCGGCGGACAGGAGCCGGGGTCGATGGATGAAATTGTGCAGTTCTGCCGGACCAAGTATGATGTAACCTTCGATGTAATGGAGAAAGTGCATGCGATAGGGGACCAGAAGCATCCGCTGTTCCAATGGCTGACGGCCCATTCAGATTCGCAAGAGGA # Questionable array : NO Score: 8.26 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 502482-502958 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSH01000003.1 Paenibacillus sp. J2TS4 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================================================================================================================================================================================== ================== 502482 32 100.0 36 ................................ ATCCGAAATTCGAGAAGAAAGAATTACACATGCTAG 502550 32 100.0 37 ................................ ACTATAAGAGAATATAACATGTATTATAAAAAAAAGC 502619 32 100.0 38 ................................ CAAACACTTAAAGCAAAGCCAATTGCTGTAATGTTCAT 502689 32 96.9 206 ...............................C TCGGGTAGCATTTATGATATTTCCATACGTGAGGATTATAATGCGAACCCCAAGCTCACATGAAAACCCCGGGAGATTCGCACTGGCGTAACGACGCGAGTATCAGCGATTTTACGAAAAAAATGACCAGATACAGAGCTTGAAATTGGAGGTTCGCACTTTTGAGCCTGTGAGCCTTTGTGGTAAGCTGGGTTTAAGAACCCGCA 502927 32 78.1 0 .....T.CT..T..AG.A.............. | ========== ====== ====== ====== ================================ ============================================================================================================================================================================================================== ================== 5 32 95.0 80 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : AATAAGTTCGTTGAATGAAACCATATGGAGGTAGGTGACAAGTTGCTCGTTATCATTACTTATGATGTGAACACCACTACCAGCGAGGGCAGAAGAAGACTAAGACAGGTTTCGAAAAAATGCTTAGATTATGCACAAAGGGTTCAAAACTCTGTATTTGAGTGCATCGTAGACTCAACGCAGTTCAGGAAGTTAAAATACGAATTAGAAGCATTAATCGATCCAAAGAAGGATAGCTTACGCTTCTATCAACTAGGTGACAATTATAAGCGAAAAGTTGAGCATGTCGGAACTAAAGAATCTTTTGATGTAGAAGGAACACTGATTCTATAGGTGCGAATGGGAAGCTCACATAAAATCCCTAGGGGATTCGCACCGGCGTAACGACGCGGGTTTCGGGATTTTACGAAGAAAAATGACCAGTTACAGTGCTTGAAAAATGGTGGTTCGCACTTTTGAGCTTGCGAACCCTTGTGGTATGCTGGGTTTAAGAACCCGCA # Right flank : TCTCCAATTATATTATGTTCTATCTAATAATCAGTGCTTGATTTTCTTCGCCGCCAAACAGACTGGATTTTATACAGCTAAATAAGTCAGATCAGACGATTTTTGGCAATCCAACTGGAAATCATACAGCTAATTTGGTCCCAATCTACCCATTCCCTCTTTATCCCTATTTCTAACGGTAGGTTTTACATTTAGTCCGGAAATCTAGCGAGCTTTAGCGAGAATTAACTGCATCAATTACATTTAGTCGGACAAGGATTATTTGGAGGGCCCGTCTGTGCGTGGATTGAAAAACAGCATGGGATTTATAATTTCATGGCGTTTTCCACAACGCGAGGGAAGTGCGAACCCCAAGCTAACATGAAACCCCCGGGAGATTCGCACCGCCCTAATGACGCGGGTTTTCGGGTTTTTAAAGGAAAAAACGACCTAATATGGCACTCGAAAATGGCGATTCGCACTTTCGGGCTCGTGAGCCCTTGTGGTATGCTGGGTTCGAG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-3, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 503466-503968 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOSH01000003.1 Paenibacillus sp. J2TS4 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 503466 32 100.0 37 ................................ AGATTTCGATCGATGGTAACGTCGAAGAATGGACTCC 503535 32 100.0 36 ................................ CGACACCGTTTCATGAGGGGTCACGAAATCTATATC 503603 32 100.0 34 ................................ TTTAGCTAACTGAATAGCTTACTCCGAGTATATT 503669 32 100.0 35 ................................ TGTACAGCGTGATTGCTGTGACCAGTTCGACTAAC 503736 32 100.0 35 ................................ TGTACAGCGTGATTGCTGTGACCAGTTCGACTAAC 503803 32 100.0 38 ................................ TTCAATTGGTTGTTGAACTTCCGAGGCCCTACAGGCTC 503873 32 96.9 32 ..............................T. GGGGTCTGCCACCAGTTGGGTCCCGATTTGTA 503937 31 81.2 0 .....-.....TG...TA...A.......... | A [503946] ========== ====== ====== ====== ================================ ====================================== ================== 8 32 97.3 35 GTCGCATCCTACATGGATGCGTGGATTGAAAT # Left flank : TATATTATGTTCTATCTAATAATCAGTGCTTGATTTTCTTCGCCGCCAAACAGACTGGATTTTATACAGCTAAATAAGTCAGATCAGACGATTTTTGGCAATCCAACTGGAAATCATACAGCTAATTTGGTCCCAATCTACCCATTCCCTCTTTATCCCTATTTCTAACGGTAGGTTTTACATTTAGTCCGGAAATCTAGCGAGCTTTAGCGAGAATTAACTGCATCAATTACATTTAGTCGGACAAGGATTATTTGGAGGGCCCGTCTGTGCGTGGATTGAAAAACAGCATGGGATTTATAATTTCATGGCGTTTTCCACAACGCGAGGGAAGTGCGAACCCCAAGCTAACATGAAACCCCCGGGAGATTCGCACCGCCCTAATGACGCGGGTTTTCGGGTTTTTAAAGGAAAAAACGACCTAATATGGCACTCGAAAATGGCGATTCGCACTTTCGGGCTCGTGAGCCCTTGTGGTATGCTGGGTTCGAGACCCCGCA # Right flank : TCTGGAAATTAACGAAGGGTTGGACTAGATTTTGTGCCGCCCCTTACGTGCGAGGATACGGAACGATATTCATTTACGATAAATCATCGATACTTGGGACACTTTCGGTCATGAGTATCCTGGTGTATGCTGGATTTGGGTCTTACTGTAGCTATCCGTGTGAGTGTGCGGACTGCAACAATTGGGACTTAAGGGATGGATTCCCACTTCTACCCATTGTGATACAATAAATAAGCTGAGGTTCACTAAACTATCCTGAACCTGGCGGTAAAGGCCAGCTAGAGTTGGGAGGGGATAGAAGATTCGAGAATTAAACAGAAATCCACTATCCACTAGGAGAGGAGATAAAGATGAAGTCTACAAGGGAACAAGCAGAAGCATTTTTACAGCAGCATGATCAGCAGCATCTACTTAAATTTTACGATCAATTGACTCCCGAATCCCAAGAGCAGTTATTGGATCAAATCCTCTCTCTCGATTTGGATAAGGTGGTCTCGCTA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACATGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.50,-3.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //