Array 1 176133-178950 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHQ01000003.1 Moraxella catarrhalis strain COPD_M25 NODE_3_length_240371_cov_49.5028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 176133 28 100.0 32 ............................ CCCATTGAGACCATTTTTAATGATTTTGAAGA 176193 28 100.0 33 ............................ ACGGGCGAATTTATTTTATCTTGAGCATTGCCG 176254 28 100.0 33 ............................ TTAATCTCCCAAAGCGTGTCTTTAATCGTCTGT 176315 28 100.0 32 ............................ AAAAATAGGGCTTATCAAGATTTGAATTTAGA 176375 28 100.0 32 ............................ TTTTTCGCTTACTTCCAGTCTCTCTAATCCCT 176435 28 100.0 33 ............................ TTATTTTCAGGGGTAGAAATACAGTGGCTTAGT 176496 28 100.0 32 ............................ TCGTAGATTTAACGCTGGATTATGTTCAATAT 176556 28 100.0 32 ............................ TGTGCGATTACTACCAAGCCGGGGAGCGGTGA 176616 28 100.0 33 ............................ TCAAAAGTAACCTCAATTTGTGGTACACCACGA 176677 28 100.0 33 ............................ GCTCCGCCAAAGCCATTATTGGGGCGGTTGCCA 176738 28 100.0 32 ............................ GCCCCGAATATTCGGGGCAGTGATTTGGGTAT 176798 28 100.0 33 ............................ TCATTATTACCACCTGTACCAACATTCCATTCA 176859 28 100.0 33 ............................ TCATTATTACCACCTGTACCAACATTCCATTCA 176920 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 176980 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 177040 28 100.0 32 ............................ AAGGTAATTTAAACGCAAATTCAGGCGTGTTC 177100 28 100.0 32 ............................ AATGGGGTGAAACATTACTTTAGAGACAATAC 177160 28 100.0 32 ............................ TATGAGCCAATTAGACTGCTCGCTGGGCAACC 177220 28 100.0 32 ............................ GCTTGGCGTTGATGGCTTTGATTTCACTAATC 177280 28 100.0 32 ............................ AATTTTGCCTGCCATACGGTCAAGGGTGATTT 177340 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 177400 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 177460 28 100.0 32 ............................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 177520 28 100.0 32 ............................ GTATTTCGTGTTTGCCTCTCCAAAAATTGAGC 177580 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 177640 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 177700 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 177760 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 177820 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 177880 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 177940 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 178000 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 178060 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 178120 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 178180 28 100.0 32 ............................ ACTCACTACAAAAATACTTCGCTTTATGCTGT 178240 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 178300 28 96.4 32 ..........A................. TTATTGGTAGGGTAAGCGAATGTACCAAGCGT 178360 28 100.0 32 ............................ ATATTAGATGAAAAGCGATTGGCGGAGTTGGT 178420 23 82.1 0 .......................----- - Deletion [178438] 178443 28 100.0 32 ............................ GTGCTGAATGTGAAAGCATTGCATGGTCGGCT 178503 28 100.0 32 ............................ ATCTTTGCACATAGAGACCAAAACCTTATCAA 178563 28 100.0 32 ............................ AGTATTTGTATTGATTGATGGTGATTGAGTGC 178623 28 96.4 32 ...................A........ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 178683 28 100.0 32 ............................ GCAATGAAACACGCACGCTGACAGACGCTAAC 178743 28 100.0 32 ............................ ATGCCTGACACCACACCGCCTGACTGCACTTT 178803 28 96.4 32 ..........A................. TAGCACCGCCCAGCCGCCCACACACGCACATT 178863 28 100.0 32 ............................ AAGCGATTAATCCGCTCACCAATTGTTCTGTT 178923 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.3 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 186-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHQ01000055.1 Moraxella catarrhalis strain COPD_M25 NODE_60_length_223_cov_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 185 28 100.0 32 ............................ AAAAATAGGGCTTATCAAGATTTGAATTTAGA 125 28 100.0 33 ............................ TCAAAAGTAACCTCAATTTGTGGTACACCACGA 64 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : AGAAATTAATCTCCCAAAGCGTGTCTTTAATCGTCTG # Right flank : AGCTCCGCCAAAGCCATTATTGGGGCGGTTGCCACTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.50,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //