Array 1 474328-475636 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPO01000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain SL_28_117 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 474328 29 100.0 32 ............................. TCGTCCGAACGTACCCTGGCTGTCCAGGCCGC 474389 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 474450 29 100.0 32 ............................. CTCACCCGATTAAACAAGAGGAGCGCAGAAAC 474511 29 100.0 32 ............................. TTTATATCCAGTTTTCGGCAGAAGCGCCGCAA 474572 29 100.0 32 ............................. CAGTATTTCGGCATGGCAAGCCGCAGCGCGAA 474633 29 100.0 32 ............................. ATAATCGGGATACATTTTGTTGTCCGGGTGGC 474694 29 100.0 32 ............................. TCAGAGCCTTTTTGATGAAGTACTACGGCAAC 474755 29 100.0 32 ............................. GCGTACAGCCGTATGCCTCAGACTCCCCACGA 474816 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 474877 29 100.0 32 ............................. GGCCGATATACAGTTTTTACTGTGGGATGCGC 474938 29 100.0 32 ............................. TTTACGGGCGCACAGCGAAAACTACCGAAACC 474999 29 100.0 32 ............................. CGGAAATTCAGGGAACCCCGGAAGCGATTAGA 475060 29 100.0 32 ............................. CAGCGCAGACTACTGGCGCTGACGGCTCGTAC 475121 29 100.0 32 ............................. CCTCCGGAAGAGCGGAATCCGACATAATTATT 475182 29 100.0 32 ............................. ACTCGCTTATGCATAGTGACAATTGGGCAACC 475243 29 100.0 32 ............................. TTGAAAGAGCAATTAGCGCCGCTGGCATCAAG 475304 29 100.0 32 ............................. GCGCCGCGCAGTTCGTGGACGCGAAACGGATT 475365 29 100.0 32 ............................. CTACACATGCACCGGGTATCCGTGAGCATGAT 475426 29 100.0 32 ............................. GCGGGCATGTAAATAGCAGGTCAGCAGATACG 475487 29 100.0 32 ............................. ACACAAATGCAGTTAGCTAATCGTGCATGGCG 475548 29 100.0 32 ............................. GCAACAGTGCTGGTGGAATTAAAAACACCGAC 475609 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 485300-487037 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPO01000003.1 Salmonella enterica subsp. enterica serovar Kentucky strain SL_28_117 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 485300 29 100.0 32 ............................. TGTACAGTGTCAGTTATTACCTGACACATGTC 485361 29 100.0 32 ............................. CTGCATAATTGGCCTGGCAAGGTCAGTGAAAG 485422 29 100.0 32 ............................. TAAGAGGCGGTATCATTTTTGTCTTCGGGCGG 485483 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTGCACGTT 485544 29 100.0 32 ............................. GCCGTTGATAAAAAAACGGGCGAACTGGACAA 485605 29 100.0 32 ............................. AAGAACGTTTGCAACTCCCTGGTGAAGCGGTG 485666 29 100.0 32 ............................. TTTTTTGCGTCCCTGCCTCCGGATGAACAGGA 485727 29 100.0 32 ............................. ACCTCAATAAAAATTTACACCGCCACACCGGC 485788 29 100.0 32 ............................. GCGATGCTCAGGATTCAGAATCTGAACGTCCA 485849 29 100.0 32 ............................. ACGCTGAACCTGAAAAGCACGTTGCCGGGCGA 485910 29 100.0 32 ............................. GATGGACACCACAACTACGCGGCGGCAAAACT 485971 29 100.0 32 ............................. ATCGGGGAGGTTGTGCAAGGGATTTTATCGTG 486032 29 100.0 32 ............................. TCAGCAAAAAAGACCTGTTTGCCGATATGGGG 486093 29 100.0 32 ............................. AACCGGAGGGGGTTCCTGCCGGGTACGCATAA 486154 29 100.0 32 ............................. CAGCCCCTCTAAAATTGTTGCCCGCCACGTAA 486215 29 100.0 32 ............................. AAAACCAGCGATAACGGGCGGGCGTTTATACG 486276 29 100.0 32 ............................. CGACGCCCGATTCCTGTTGCCAGCGCCCCGCA 486337 29 100.0 32 ............................. GCCGCTATCACCAACGACCCGGGCGTTGTTGG 486398 29 100.0 32 ............................. TTCCGTCGTGTAGCCCGCTGGTTTGGGTCGGA 486459 29 100.0 32 ............................. TTGTTATCCCGCCTGTGGTTTAATCGCGAGTG 486520 29 100.0 32 ............................. CCGGGTGCATCATGCAAAATCCTATAAGGAAA 486581 29 100.0 32 ............................. AATTGTCAGTGTAATTGCGCATATCGTTCGTT 486642 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 486703 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 486764 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 486825 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 486886 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 486947 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 487008 29 96.6 0 ............T................ | A [487035] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCTGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTCATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //