Array 1 134132-133624 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRZP01000005.1 Pseudomonas aeruginosa strain AU25116 NODE_14_length_134476_cov_7.11539_ID_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 134131 28 100.0 32 ............................ TCTTCGCAATGTGCCCATAGGTCCATGTGGGC 134071 28 100.0 32 ............................ TTGCCCAGGCGCTAGGAATATCCACCGACGAA 134011 28 100.0 32 ............................ TTGATCGCCGGATGATCCGCCTTGAACTCACG 133951 28 100.0 32 ............................ ACGTATCCCGAGCGCGAACGCGGCTTGTGCAT 133891 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 133831 28 100.0 32 ............................ AACGCAACGACCGGCTCTACGGGCGCCGACGG 133771 28 100.0 32 ............................ CGCAGGAAAATTTGCTAGCACTTTTCGACCTG 133711 28 100.0 32 ............................ ATTGCGCTCAGCGCGAAGAACCACAGAGTGAA 133651 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATAACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCGATCCCTGGATAAGCGGCGGATAACCGCGAGCGGTTATTCGCCCTACGGATCGGGTTCCTGGTATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGGCGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGTTCTGTACGTGTGAGCTCATCCTCTAAATGGACATACCAAACCCATACAAATCAGCAGCTTGAGATTTTTTGTCCATTGTCCATTTTTTCCCAGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 345-912 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRZP01000027.1 Pseudomonas aeruginosa strain AU25116 NODE_34_length_49422_cov_6.65797_ID_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 345 28 100.0 32 ............................ CAAAGCTCTGGTGTGGTTTGCTCGCACTCAAC 405 28 100.0 32 ............................ TTCGAGGCCGACATGCTCGACCGCAGCAAGGT 465 28 100.0 32 ............................ AATGGCAGCAGCGCGAAAAGCTCGCGGAGTTC 525 28 100.0 32 ............................ TCGCCGATCAGCAAGATGGAGGCTTGGCTGGA 585 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 645 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 705 28 96.4 32 ............A............... AGCAATGGAAAGCAGCGATGTGACCCGACCCG 765 28 96.4 32 ............A............... TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 825 28 92.9 32 ............A...........A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 885 28 71.4 0 T.........ACA....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 95.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11197-9787 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRZP01000027.1 Pseudomonas aeruginosa strain AU25116 NODE_34_length_49422_cov_6.65797_ID_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11196 28 100.0 32 ............................ TGATCAAGAAGAACCCGATGGCGCCACTTGAG 11136 28 100.0 32 ............................ ATCCTATCGACGACAAAGTGCTCGAGCATCTC 11076 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 11016 28 100.0 32 ............................ AGAAAGCCAAGATCTACCGCTGGAGAAAGGCG 10956 28 100.0 32 ............................ GAAGAACATCGCTGCGGCGATCTGGGCCTCGC 10896 28 100.0 32 ............................ AGGGGTTCGTCCCTGGCCGAGGTGGCCCGCTC 10836 28 100.0 32 ............................ AGGAAACCAGAGCAGGAGGATGGACTATGACC 10776 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 10716 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 10656 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 10596 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 10536 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 10475 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 10415 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 10355 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 10295 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 10235 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 10175 28 96.4 32 ............G............... AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 10115 28 96.4 32 ............G............... AGGTCGGGGATGGATCGAACCACCCGCGCGAC 10055 28 96.4 32 ............G............... GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 9995 28 96.4 32 ............G............... TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 9935 28 96.4 32 ............G............... AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 9875 28 96.4 33 ............G............... GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 9814 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //