Array 1 1083-335 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZR01000005.1 Bifidobacterium subtile strain LMG 11597 Contig05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1082 31 100.0 35 ............................... CCCTATGCAAGCAGCGGGCAACACGTACATCACGC 1016 31 100.0 35 ............................... CGGCTCGCGCCATACGCGCTCGAACTGGTAGTCGT 950 31 100.0 34 ............................... ATCGTCTGTCTCCTTGGTTGACGGAGATCAGGTT 885 31 100.0 33 ............................... CGATAATCCCGAATCGGCTGAAGCGATGGACAC 821 31 100.0 34 ............................... ATCATTGAGCGCGAGAAGACATTTAGAAGTGCAT 756 31 100.0 34 ............................... CCTTATGCTCTTCGCCAGCCGAACAGGCTGACGT 691 31 100.0 35 ............................... TGGTTCCGCTGATACGCGGGTTCGCTCGTGCTCCA 625 31 100.0 35 ............................... TTGTTGCCATACGGAAGGATGTACGCCTGTCCCAG 559 31 100.0 34 ............................... CCGCGTCGTCATGCTCGAATGAGACGTCGATGGA 494 31 100.0 33 ............................... GATCCGATTGCGTCTATTGGCTCTCCGGCCTGG 430 31 100.0 34 ............................... TGATACTGATAAGGAATGATGTCCGCATCCGCAG 365 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 12 31 100.0 34 GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Left flank : GACGACTTCGTCAGGTCGCTAAAACATGCAAGAAGTATGGGCAGCGTGTGCAGAACAGTGTTTTCGAATGTTCTGTGACGCCCTCGGATTTTCTGACACTTAAACATGATTTGCACAAACTCGCCGATTTGGAGTCGGATAGTCTGCGGTTCTACAATCTTGGAGCGAACTACTCGAATCGGATTGAACACATGGGAGTGCAACGGCATCTGCCCGATGATAGTGTCATGATGGTGTAGGTGATCGGTTTGGCTAATCGATGATGGACTATAAGGGGGTTTGTGTCCCTGTGCGAGAGTGAAGCGCTCATGGATTCCCTGGAGGTTCGCACCTGATGTCAGGCTACGGTTCGCGGGAAACAAAGAATTTTCAGTGGCAATAGGGTCATCTGATTGTTGTCTGATAACGTAAGAGTGCTTTAAGTGCGGGTTTGTATGGACTTGTTCTCATTTTTGATATAGTTAAGTTCGCATGGTGGGATATTGGATTCCATTTGTGCG # Right flank : TGCTGCCAACTGAGTATTGTTTGTGTGTCCATATGTTTTTAGTCAAGTTGGTTTTTTGTGGTTGGTCACTTATTTTTTTCGGGTTTCGGCGTGGAGCGTGCTGTTGGTTATTGGTTGTGGATTTCCTTGCCGAACATGAGGGCTTCGCTCACGCGCCGGCTTGGTCCGGTGAATTCGATGAGGCGGCCGTGGTGGACGATGCGGTCGATGATCGCGGCGGCGAGTTTGTCGTCGGCGAAGATCGTGCCCCATTTGCTGAACTCGATGTTGGTGGTGAAGATGATGCTTCTTCTCTCGTAGCTGCCGGTGATGATCTGGTAGAGGAGTCTGGCGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 625210-628941 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZR01000006.1 Bifidobacterium subtile strain LMG 11597 Contig06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 625210 31 100.0 34 ............................... GACAATAGGACGTAGTAATGGCCGTACTTTTGAG 625275 31 100.0 33 ............................... AACCTGATCTCGAAAGGAAAGCACGCATGAGCG 625339 31 100.0 33 ............................... GCCACGCAGCTCGCCATCGCCGGCGCCAGTGAG 625403 31 100.0 34 ............................... GGCCTGAACTGGCAGAACTGCGCGCGGATCGTAT 625468 31 100.0 34 ............................... TCTCAGGCCAGTTCGATGGAGCAGCTGCGCGTCT 625533 31 100.0 35 ............................... GCTACCGGCCCTACCGCATAGGATTCGGTCACGGT 625599 31 100.0 34 ............................... CGTGGATTATCCGGCGAACGGTCCTTTGGTTGTT 625664 31 100.0 34 ............................... GTCGCTTACACGCTGAACGTGGACAGTCTGGCGG 625729 31 100.0 33 ............................... TGATGCAGTCGCAGTTGGATCAGGCGGCCCGCG 625794 31 100.0 35 ............................... TTCCGGAGTCTCTGCGGGCGTTTCGGGCGTCACGG 625860 31 100.0 34 ............................... GCCGGAGTCATCAACAGCAGCATCGACACCGACT 625925 31 100.0 33 ............................... TCCTTGCTGGCAGTAAGTGCTGCCTTCGTCTCC 625989 31 100.0 33 ............................... CCTTGCCGGTTTTGCCGTCCTTCCACGAGTAGG 626053 31 100.0 35 ............................... TATATCGTCTCGAGAGGCGGAGGAACAGGTCAGCG 626119 31 100.0 34 ............................... ATCTACGTCAGGCAAGAAGGGGGATACCGAGGAG 626184 31 100.0 34 ............................... TCGTCGATCATCCACTGTCTGCCGACCTTGTGCG 626249 31 100.0 33 ............................... ATCCGCCGGGCGGTCCCTCCTCTTGCTCTTGTC 626313 31 100.0 35 ............................... ACGATCACTGGTCATCACTAGCTCACTGCTGGCCA 626379 31 100.0 32 ............................... GGTTCAGGTGACTTCTTCTGCAATCTCGCCTC 626442 31 100.0 34 ............................... CTACCCCGATGCTGGTCAAGTACGTGGCAGCTGA 626507 31 100.0 34 ............................... CTATCGAAAGACGCTAGAGGCAGGCAGCGGTCCA 626572 31 100.0 33 ............................... GAGAACTCCTCCACCCAGTTATACACCATATTG 626636 31 100.0 33 ............................... GATGCGCCGTTTATGCTCGCGGTCATGCGGGCA 626700 31 100.0 35 ............................... TGGCTGAGGCTGGCTGTGCCATGGAGAACGACGAG 626766 31 100.0 35 ............................... TAAATTGAGGGCGTACACTTGTGGGTACTGATCTG 626832 31 100.0 34 ............................... AGAACGTAGACCGAGTCGATGTTTTCGAACGACG 626897 31 100.0 34 ............................... ACATGGTCGAATGCGGTCAGATCGCCTGCTGAAT 626962 31 100.0 34 ............................... CTGTTCTGGCGATGGCTTGCATGTGTTCGTGCGG 627027 31 100.0 34 ............................... TGCTCAATGCTCGCAAGCCGTGGGTTTGTCTATT 627092 31 100.0 33 ............................... GCGCAGGCCGGCACCATCGGAGCCGAGGGCGGC 627156 31 100.0 33 ............................... CGGGCGCTATCGGCGGGTTTTTCAGCGGGATCG 627220 31 100.0 33 ............................... GCCCAGAAGCAGGCGGACGCGAAAGCCAGAACC 627284 31 100.0 34 ............................... AAGACCACCGTGTCGCAGACGTATGACACGAAGT 627349 31 100.0 33 ............................... TCGAACCCGCCGTCAATGACCATTTCCTGCGCG 627413 31 100.0 33 ............................... GCGAGCGAGCCGATCAGGTCGACCGTCCTCCCG 627477 31 100.0 35 ............................... TCTGGCTGAGATTGCGGGATTCTTCAAGATCACCG 627543 31 100.0 34 ............................... GCGACCAGCTTGTCGGTACTGATCGACCCATCCG 627609 31 100.0 34 ............................... CTCTGGCGGGAGTCGAACCCGCTCCGGCATGGAG 627674 31 100.0 34 ............................... GAAACCGGCATGCGCCAGGGGGAGCGGTTCGCCA 627739 31 100.0 33 ............................... CTGTTCTCCCCCACGCTGACGAACTTATCCGCG 627804 31 100.0 35 ............................... CGTACGGCAGGCGAAGAAGGTGGCGGGCATCACCG 627870 31 100.0 34 ............................... AGTCCAGCAGGATCGTCACACGGACGCAGAAGGC 627935 31 100.0 35 ............................... TCCTTGGCGTGCGGGCGTTCTACGGCGACCATGGG 628001 31 100.0 35 ............................... ATCTGCTCTTGATATTCCTTGGCTTTCGCAAGGGC 628067 31 100.0 32 ............................... CGAGCTTCGCCGCCAGAGTCGCCGGTGGCGCG 628131 31 100.0 35 ............................... GACAGAGAGATGATACGAATGGATATATATCTGGT 628197 31 100.0 33 ............................... CTGCACCGCGAAATACCCCCGTACGCGCACCCA 628261 31 100.0 33 ............................... AACCTGATCTCGAAAGGAAAACACGCATGAGCG 628326 31 100.0 33 ............................... AACCTCGCCCAAGTCGATGCCCAAATCCACCAG 628390 31 100.0 35 ............................... AACAGTCAATGCAGGAGGAGCTATGAGCGCCATAG 628456 31 100.0 33 ............................... TCATGGAGCGGGTAGGTACCGGGGATCCCGGCG 628520 31 100.0 33 ............................... CTTGAGCCATTCCGCAGCCCACGCGACGCCATG 628584 31 100.0 33 ............................... CGTATACCCATCAGCGTCACCCATGCTGCACAC 628648 31 100.0 34 ............................... CCGCTCAAAATCGCAGAAGGCTTGGTCGGCAAGG 628713 31 100.0 35 ............................... TCGAACCATGCGAGCGGATACTTGGAGCGGGCCAG 628779 31 100.0 36 ............................... TCGACCGCTTGGAACTGGATCAAAACAACTGTTATC 628846 31 100.0 34 ............................... GCCAGCGCCAGTTGGGCCGCATCGTTCGTCTGGC 628911 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 58 31 100.0 34 GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Left flank : ACCCGCTCTCGCGCTCGAACGCGAACTCGCGCTTGAGCTGCGCGACCTTTCTGGTCACCGTCGACAACGAGACCTTCACCCCATGCTCGTCTCGAAGCCGCTCCCAGACCCTGGTCGCTGTATGCCGCTGCTTGCGCCACGTGACACGATCCTCGGCGAGCCACTGCTCGATGACAGGCGTCCACTCATCAAGCATCGAGGCCCGCCCCTTCCTGACCGGCGGCCTGGCCGACAGGTCATCGACCTTCAGATACTTGCGCACCGTCGGCTCGCTGACGCCTTCGGCGCGCGCGATCGAAGCGATGGACTCGCCCTCCCTGCGCCGACGACGGATAGAATTGATTCTGGACATGTTGATCATTGCCTTTCCGGCCCTCCTCGATAGATAACGAAGCACTACCAAGGTACAGCCCGACTATGGTCAGCATGCCCACGCCCAAACCCGAAAAAACTACCTGACCAAAACCACAAAAAACAATTGAACCAAAACAGTCCATACG # Right flank : TCCCGGGTCCACCGTCGTCTCATAGCTGTTTTGGTTCAATTGTTTTTTGTGGTTTTGGTCAGGTAGTTTTTTCGGGTTTGGGCGTGGGGCATGCTGACCATAGTCGGGCTGTACCTTGGTAGTGCTTCGTTATCTATCGAGGAGGGCCGGAAAGGCAATGATCAACATGTCCAGAATCAATTCTATCCGTCGTCGGCGCAGGGAGGGCGAGTCCATCGCTTCGATCGCGCGCGCCGAAGGCGTCAGCGAGCCGACGGTGCGCAAGTATCTGAAGGTCGATGACCTGTCGGCCAGGCCGCCGGTCAGGAAGGGGCGGGCYTCGATGCTTGGATGAGTGGACGCCTGTCATCGAGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 314536-308972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZR01000016.1 Bifidobacterium subtile strain LMG 11597 Contig16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 314535 31 100.0 33 ............................... CGATTACATCGTTGAGCTGCAAGCGCCCGGCGA 314471 31 100.0 35 ............................... TCCCAATGCTGTTTGATGATCAGCCGGTGCGTCAA 314405 31 100.0 34 ............................... TGCTCGGTGGCGACACTGCCCAGTTCGGCCGCCA 314340 31 100.0 33 ............................... GTTAATTCGCAGACGGTCCAGGTAGACGCTGGA 314276 31 100.0 35 ............................... CAAGCGTTCTGCGCATTCGTACCAGCAGCCCGGAA 314210 31 100.0 34 ............................... TACGGCGTCTCGTCCGGCAACGCCGTGTGCTCGA 314145 31 100.0 34 ............................... GAAATCAGGTTGAATAGCGTGCAGCCGCTCGCGC 314080 31 100.0 34 ............................... GGATACAAAAACGACTATGCGTGGCAGCGCTATG 314015 31 100.0 34 ............................... GCGTTGGCTATCAACGCGCGGCGAGCCGCCCACT 313950 31 100.0 34 ............................... ACCATGTGGCTGGCGACCATCGACACAAGCAGGC 313885 31 100.0 33 ............................... CATTGAAAAAGCACTGGCGAATGGTGTCAGCGG 313821 31 100.0 35 ............................... CCTTCGGGCTATGCGTGTCAGCTCGTAGATGCCGA 313755 31 100.0 36 ............................... TCGGAGATGACTGCGGCGGAGGTGCTGGTGGCGCCT 313688 31 100.0 35 ............................... GCCGTCTGCTCCTCGCTGTTGGCGAACAACTGCAC 313622 31 100.0 35 ............................... CCCGATTCGGACGAGGATCGCGCCATGTGGCGGCT 313556 31 100.0 35 ............................... TTCAACGTAAGGAGCCATATCATGGCAACATTTGG 313490 31 100.0 33 ............................... AACCTGATTTCGAAAGGAAAACACGCATGAGCG 313426 31 100.0 35 ............................... GTCTTGCGCGTTTGGAGGAGAGAGAAGACACCGGT 313360 31 100.0 35 ............................... ATCGACTTCGCGCAGAAGATGGGCATGTCCGCCGG 313294 31 100.0 34 ............................... AATCATCAACAATCCCGACCCCGAATCACGGCAG 313229 31 100.0 34 ............................... CAGTACATGCTCTCCGACCACAAGGGGAGCGAGC 313164 31 100.0 35 ............................... TCCAAGCAGGCGAAGGATGCTACGGGCGGAATCGG 313098 31 100.0 33 ............................... CTTGCCGTGGGGCAAGAGACGGCCGCATGAACA 313034 31 100.0 34 ............................... ACGCAGTGGGAGGCGCAGTTGCAGGTTACGTTCG 312969 31 100.0 35 ............................... ATCGGCCTTTGGTCGTATGTCGATGACAATGGCGT 312903 31 100.0 35 ............................... TCGACGGTTTCGCCCGGACGCGGCAACGGCTTCGG 312837 31 100.0 34 ............................... TCGACGCTCTCAACAACAAATAAGGAGTAATCCC 312772 31 100.0 34 ............................... TTCCAGAGTCTGTGGAATGGCATTGTAGGGTTTT 312707 31 100.0 34 ............................... GATGCGACCATGTTGCACTTGTTCCAGGCCGTCC 312642 31 93.5 34 .....................AA........ CTTGACTTGACCGTCATCGATGATGATCGCTCCG 312577 31 100.0 34 ............................... CCATTGCTCCTATGCCGTCATCTTCTCGGTCGTT 312512 31 100.0 34 ............................... AGGAACAGGCCGGTGTGATCCAGAAACTCGAACA 312447 31 100.0 33 ............................... CACTCGCTCGTATTGTCCTTCGAATCGGTGAGG 312383 31 100.0 34 ............................... CGTAACCCCCGCTCGGCCTCGGCAAGCCTGTCTC 312318 31 100.0 34 ............................... ATCGGATCGAGGACTGAGCATGGCTGTGAAACGC 312253 31 100.0 34 ............................... CATGGAGCAGAGGAACGCCGCGCTGCAGACCATC 312188 31 100.0 35 ............................... ATCGACCGTTGCATACGCCTGTGGAGCAATAAGGG 312122 31 100.0 33 ............................... CATCATGCTGCGCCTGCTCTCCGCAGGCTCGGG 312058 31 100.0 36 ............................... GAAAACTATCCGAACGCGATCTACCAGCGGATCAAA 311991 31 100.0 34 ............................... ACTCCCGCGAAGGTGGTGGACAAGTGAATGTCAG 311926 31 100.0 34 ............................... GCATCGGCAGCATCAGCCTTGTCCTGCGCGGATG 311861 31 100.0 35 ............................... AGGCTCATGCGCTCATCGAGCGAACTGGCGAACAG 311795 31 100.0 36 ............................... TATTCTGCGAATACGGGCGTGATCATCAAAACTCTG 311728 31 100.0 34 ............................... GACGAGTTGAAGGAGAAGGCCGCGAAAACGGATG 311663 31 96.8 35 ...................A........... TTCCGCTGTGGAAATTCGTTGACCTGTTGCGGCGT 311597 31 100.0 34 ............................... ACAGCCAACAGCCGCTTGCATTGGGCAGCTAAAA 311532 31 100.0 33 ............................... GATTCCTTACCGAGAATTCCGTCGACCCAGTCG 311468 31 100.0 34 ............................... AACTCGGCGGAATCGGTTTCGGATATCAGAAATC 311403 31 100.0 35 ............................... AATGAGAGTCTAATTAGAACCCACGAGGATGTAAG 311337 31 100.0 33 ............................... CTATCTGCATGCGCTGCATGACCTGATCATGCG 311273 31 100.0 35 ............................... GAAAGGGAAACACGCATGAGCGCAACACCGTTAAG 311207 31 100.0 36 ............................... CTGACGCCCGACGAGGCTGACGCGATGGCCGACAGG 311140 31 100.0 34 ............................... TCGACAAACGGCAGCGACAATTGGGTACCGTGCT 311075 31 100.0 32 ............................... CACATCACGCCCGGTCAGCACGCACGGATACG 311012 31 100.0 33 ............................... CATTCATCCACCAGCCACGGAACCGCAGCGCTC 310948 31 100.0 34 ............................... TTTAATATCACCAGATAGCCATTCATCAACGGTT 310883 31 100.0 33 ............................... CCGACGGTGAGCTTGCCGATGGCGCTCCTGCTG 310819 31 100.0 34 ............................... ACCCCGCGTGCGTCGCTCAGCTCGTACCAGATTC 310754 31 100.0 34 ............................... AATGACGCGCTGCTTGCTGGAGGCAAGAGCACGG 310689 31 100.0 33 ............................... ATTACTGGGCTTAAGGCAGCGCTCGGATCGTTG 310625 31 100.0 34 ............................... TAAACTGACCGTGGCCCGCAGCGATCTGGACGAG 310560 31 100.0 34 ............................... CCCCTGTCAGGCTCCTACGCATCGGCTCCGGCAG 310495 31 100.0 36 ............................... AGCATCGATATGGGCGGTGGATCCTCATGAGGGGAG 310428 31 100.0 34 ............................... AATCACGTAACTTCCAGTCAATGAGCGCAGTGCC 310363 31 100.0 34 ............................... AATGCCGATTGGTCGATTGCGTCGAGCGTAAAAT 310298 31 100.0 34 ............................... CTGTAGCGCTGAAGCTCGTGGCGAACGTGGATGG 310233 31 100.0 34 ............................... AAGAAGCGACTGAGGAAGGTCAGTCCGATAGGCG 310168 31 100.0 35 ............................... ATCGTCTGTCTCCTCGGCTGATTGCGGTCAGGTTC 310102 31 100.0 32 ............................... ACATACCCAAATCATTAGGAGGTTTTCGTGTG 310039 31 100.0 33 ............................... GATGTTCACAGCCATCAGCCGCCGCCCAACGCC 309975 31 100.0 35 ............................... GATCACCGATTCTGGTGTATGCACCTGCTCTAAGG 309909 31 100.0 35 ............................... TTGCCGTCGGCCAGGCCCAGCCATATGCCGCTGTT 309843 31 100.0 33 ............................... ATCTCCAGACACTGGAAGTGCTGGTCGGGCGGG 309779 31 100.0 34 ............................... TCAGAGGAAGCTTGTTCAGCTCTCTTGGATGCAC 309714 31 96.8 34 .....................A......... CGATCCGAGCCGCTTTCAATGCTGTTGCCACGAG 309649 31 100.0 35 ............................... ACTCTGACTGTCAGCAGAATGCCGCTGAATAGTAG 309583 31 100.0 34 ............................... ACCGAATACAGCAAGCTGTACAAGGACGTCAACG 309518 31 100.0 34 ............................... GCTCTGACCTTTCCAGTTCCACACGCACGCTCGC 309453 31 100.0 34 ............................... ACTACCAGTCTCGACAACGCCAGCGTGATGTCGG 309388 31 100.0 33 ............................... TGATTGCCCGCGAGGCCCATATGTTTGGCCCAT 309324 31 100.0 34 ............................... CTGGACACGGTGAACAACGCGCAGCTGGCCGCCG 309259 31 100.0 34 ............................... CAGTTGCGGGCCACCTTGTTGCCGTCGGCCGGAG 309194 31 100.0 32 ............................... TCAATGAGTCGGAGTCTACCACTGCTGAGCAG 309131 31 100.0 33 ............................... CTGTCTCTCCACATGTATGTCCATACAGCGGCA 309067 31 100.0 34 ............................... CTGCACGTAGGGGTGTTTTCTTCCGAGGACACTC 309002 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 86 31 99.9 34 GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Left flank : GACGAGTTCGGCTACGTGCCCTTCGACATCGACGGCGCCAGACTCCTCTACCAGATCATCACCGGCAGCTACGAGAGAAGAAGCATCATCTTCACCACCAACATCGAGTTCAGCAAATGGGGCACGATCTTCGCCGACGACAAACTCGCCGCCGCGATCATCGACCGCATCGTCCACCACGGCCGCCTCATCGAATTCACCGGACCAAGCCGGCGCGTGAGCGAAGCCCTCATGTTCGGCAAGGAAATCCACAACCAATAACCAACAGCACGCTCCACGCCGAAACCCGAAAAAAATAAGTGACCAACCACAAAAAACCAACTTGACTAAAAACACTCATAGCGCATGCT # Right flank : ATCTTCTTCCGCGTATTTATGATTCCAATAATTAGGCGCTCCTTCATAGGAATGGAAATCTCGAACAGACCTCGAACCCGAGAAGACGCCCATAGCGGACAATCCTGTTAATCGACAGGCAGTGGTTATGTTCTCGTCATCGAGGACGTGTCTTTGCCCGGAAATCCGATGCTGATGACGGAGATTCTGACGCTGGTGAGCAACTGCTACAAGTTGCACATGAGTCTGGGCAACTGGCTGCGAAATATCTGCAACTAGGCCTTCTTCGAGAAGTTTTATATACAGGACGACAACTGCATCGAAGGACAGTTCAGCAAGCTGTTCAATGTTTTCTTCGACCCCGAAGTGCAAAAAGCCCACCCCTCCTGCCACAAAGCGAAGAATGAGTCGGGAACCAACTCAATTCGCTGCAAGTTTGAACAGCGAACAAATGGTGCCCGAGAACGGATTCGAACCGTCGACACCCGCTTTAGGAGAGCGGTGCTCTATCCACTGAGCTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //