Array 1 2713757-2711275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015593.1 Listeria monocytogenes strain ICDC-LM188 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2713756 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 2713690 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 2713624 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 2713558 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 2713492 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 2713426 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 2713360 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 2713294 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 2713227 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 2713161 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 2713095 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 2713029 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 2712963 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 2712897 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 2712831 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 2712765 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 2712699 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 2712633 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 2712567 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 2712501 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 2712435 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 2712369 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 2712303 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 2712237 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 2712171 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 2712105 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 2712039 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 2711973 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 2711907 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 2711841 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 2711775 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 2711709 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 2711643 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 2711577 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 2711511 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 2711445 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 2711379 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 2711313 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [2711278,2711281,2711286] ========== ====== ====== ====== ==================================== =============================== ================== 38 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //