Array 1 39568-41223 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000153.1 Nostoc sp. T09 NODE_245_length_51468_cov_107.161713, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================================================================================== ================== 39568 37 100.0 35 ..................................... ATTAAATCGGAAGTGCGATCGCGCAATACTCGAAA 39640 37 100.0 36 ..................................... AAAGCTAACTCATCAAGATGTGGCGCAATATCTAAA 39713 37 100.0 42 ..................................... ATGATGAACGCTTATCAAGTCCAACCCACAGGACAAATCAAG 39792 37 100.0 35 ..................................... AAGGAATCCTCCCGGTGGCTAAACGGCTGGCTAAA 39864 37 100.0 36 ..................................... TCTTCGGTTATTGGCAGCACGATTGAGAATGCTATT 39937 37 100.0 36 ..................................... TTCTAAATTAGAGCGTCGTTCTAAAAACTCCATAAT 40010 37 100.0 35 ..................................... ATAATTCAGTGCGAGTTGTAATAAATGTGACTAAG 40082 37 100.0 36 ..................................... TTGATTTTTCTGTGATTATGAAATTTTGATTATAAG 40155 37 100.0 37 ..................................... TAGTAGTTCTACTTCTTTCTCGATAGCTCTTGTAGGT 40229 37 100.0 33 ..................................... CAAATTTTTCTTTACCAACTTTCCATTGATTGC 40299 37 100.0 34 ..................................... AGAGTTGCTGATAACCTTCCTGAGATTATCCAAT 40370 37 100.0 33 ..................................... TGCTAGGTAATGGTTGAGGAATAACCGAATATT 40440 37 100.0 34 ..................................... CCTGTGAAGGAGCTTTCTTCAAAAGCTGAGTATG 40511 37 100.0 36 ..................................... TGGGATTGGCTGATGGTGGAAGCTCCATTACTCGGA 40584 37 100.0 36 ..................................... TCTACTTACAGATATCCAATCAGCGCAATCTCTACT 40657 37 100.0 34 ..................................... ACAATACTGGCATTCCATGAAGGTGTCTCCTTGA 40728 37 100.0 35 ..................................... ACGAAACTCTAAGCACTCTTTAATCTGTAGCGCCA 40800 37 100.0 37 ..................................... ACCTGTGTATTTGATTGATCTACTCTGCGAATACTAA 40874 37 100.0 39 ..................................... AAGGCTACATAAAGTAAATTTTTTTCTTGCTCTAATTGC 40950 37 86.5 33 ............T.A........AT...........T TTAAATTTGGTTAGATATTTTTTGCATCAAAAA 41020 36 81.1 131 ...TT.....T.T.A...-.....T............ TTGTCATTGAGCTGTAAGCCACTAGATTAGCACCTAGAGCAATACTGAATTATTCGTGAAAAAATAATAATTGTGTAAGGTGGGCAATGCCCACCCTACGAAGTTTGTAGACTAATAAAATTTTTGTTGAG 41187 37 70.3 0 T...TG.....TT.AC...T........A..G.G... | ========== ====== ====== ====== ===================================== =================================================================================================================================== ================== 22 37 97.2 40 GTTCCAATTAACAATAATCCCTATCAGGGATTGAAAC # Left flank : CAGAAGACAAACGCCGCACAAAAATTCACAAGGTTCTCAAATCTTATGGACAGTGGATGCAGTATTCGGTTTTTGAATGCGACTTGACACAAACTCAGTATGCTAAACTGCGATCGCGTCTGTCTAAATTAATCAAGCCAGACCAAGACAGCATCCGGTTTTATTTCCTCTGTGCTTGCTGTCAAGGAAAAATTGAGCGCATCGGCGGCGAAATGCCAATCGATACCACGGTATTTTTTGCTTGAGTCTTGCGTCAACCTGTAGGTGTTTGAAAAATAGAGCCAAATTTTACGCCTCGAAAGCTTATCCCCTCTAGCTTTGAACCCTTTTACACCTATTTTGAGGTTGACGCAAACTCCCAAATCCTTTCTACACAAACTTTTCAGCCTTTCGCCCCAATGTCACCCTTGACAACCCAATGCCCCAAAAGCTACTTTAAGTTGAGGTTGACGCAACTGTACCTTGAAAACCAAATATATCAATACTTTCAACTGTGGGCG # Right flank : CGTGAATGATGTTCAGCTTATAGAGCAAATTCAAGTTGAAATTCATTTAAATTACTAATATGGATTTCAAAGTATTTGAGTTAAAATTCATCACAATCCCTATTAATGGTGATAATTTCTAACTAAGTATTACTACTGAGACATAATCTGCTATAAGCTGAATAAATGAACTACGAAACAGCTCGCAAAATTCTTATAGACCAAGTATTACCAACCGAGGACAACCCAGATTCCTTGTTAATGCGTATGAAGCAGGGAAAACCGCCAGTTCCTGGTCAAATCACCTCGATGTTGTTGGCCTTAAAAGTGGTGTTTGAATCCCTCAAAGAAGCCTCTACTCTCGACAGAGACTTAGCTTTTGCACTTTTTGAGTTAAGCATTAAGACTCAACAGCTATTCGCCGCAGGACGCAAGGCTGGAGTTGATTGGCCGCCATTACTTAAGGAAGATTTGCTACGAATTTCTCTAGCAGCTGAAAGTATTTTTTCTGGTACATGGCA # Questionable array : NO Score: 8.70 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:-0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAACAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 14106-12769 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000016.1 Nostoc sp. T09 NODE_26_length_62615_cov_109.880028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 14105 37 100.0 38 ..................................... CTCTCGCAGAGAAGATTTTTCTTGCTCTTGTACTTGAG 14030 37 100.0 34 ..................................... ATCTCTATTTAAATCTTTACCTAGTTCAAGTATC 13959 37 100.0 35 ..................................... GAAAGATACAAGTAGAAAGCAACCGGAAAGCCAAA 13887 37 100.0 34 ..................................... CAAGATTATACTAATAGACAATTTGAGGGACAGG 13816 37 100.0 35 ..................................... AGGGTTGTACCTAAACAACCCCCTAAATTCTTAAA 13744 37 100.0 34 ..................................... CTCTTAAGGAGTGATACAGTTCCTTGTGTGCCTT 13673 37 100.0 36 ..................................... AACTACACCTTACGCTTCTAATACTGCTGTTGCTCA 13600 37 100.0 38 ..................................... CTAGATTTTATTTGGGAATAACTGCACTAGAAGCTCTT 13525 37 100.0 34 ..................................... TTTTATCGCGTAAAGATTTAGCTATTTCCTGACT 13454 37 100.0 35 ..................................... AAGAATGGTTACAGTGGTAGCCCATTGTCTAAATA 13382 37 100.0 35 ..................................... TGATAAAAACCAAATCCTTGGCGAATCTGTTCCTT 13310 37 100.0 34 ..................................... AATTTTTCCCACAAGTTACCGCGATAGCTTCGCT 13239 37 100.0 34 ..................................... ATATTGTATGCCCTACAACAAGAGACTGCGACAG 13168 37 100.0 36 ..................................... TTTATCCTGTTTCTTTATTACGAATAATTCACCCCG 13095 37 100.0 37 ..................................... TTTTGAGATTGCTTACTTGGCGCACTTAACAGCAAGA 13021 37 100.0 34 ..................................... AAAAGAAGCAAGGGCGGGGGTATTCCGCTGGAGC 12950 37 100.0 34 ..................................... TTTGACTGGGTAAAATTCAAACAATCCTTTATCT 12879 37 100.0 37 ..................................... TGAGTGAAATGCTTTTTTAGTATTCATAGTTTTTATT 12805 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 99.9 35 ATTGCAATTAATTAAAATCCCTATCAGGGATTGAAAC # Left flank : AACAAGACTGACACGGAGAAATTTTCATAAACCCCTCCGGACACGGGCGATCGCACTCATCCGTCAAGTTTATTTCGTTGATTGGGTTCATTCCCAATCAACAATTGCGATCGCTGAAAGTTCTTATATTTGGATAAAGTCGAAATGATAGCACTATTGCTATCTCCTCTGTGCTTGCTGTCCAAGGTAAAATTGAATTTATTGGTGACGAAATGCCAATCGATACCACAGTGTTTTTCGCTTGAGCCTAGCGTCAACCAGTAGGTGTTTGAAAACAACAGTCAAATTTTCCGCCCTAAAAGCTTACTCCTGCTAGGTTTGAACCCTTTTCTACAGAGTTTGAGGTTGACGCAAACTCTCTAACCCTTTCTACACAAGCTTTTGAGCTTATTTTACTCATGACACCCTTGACAACCCAACGCCACAAAAGCTACTTTGATTGGAGGTTGACGAAACTGTACCTTGAAAACCAAATATATCAATGCTTTCAACTCCGGGCG # Right flank : TGACCATTTTTAACTTTTTAAGCTAATGTCATTCCATTAGCCAGGACTGCAATTGACACAAATGAACGGTTCTTCCTTAAGAAAGACTATGACACTACGGCATTAGCAATACTCTGCATCTCACAAATTGCATAATTTTGAGCCAATGCTAATAGATTTCATTATTGCTAGACCTAGGTTTAACTTTTTTTACTTATCATTCCACCACTCACGTGCCAATGAGTACATTTTCATGTACTGATAGGAATATAGTACAAATGAAGTTTTGTGAAGCGAGGACTAGGAATGTACATTGTACAGATTGCCTCGGAATGTGCTCCTGTAATTAAAGCAGGCGGTTTAGGGGATGTTGTTTACGGATTAAGTCGGGAATTAGAGACTCGGGGACATTGTGTCGAGCTAATTCTGCCCAAGTATGACTGTATGCGCTACGACCATATTTGGGGGCTGCATGATGCCTATCGCAATTTATCTGTGCCCTGGTATGGTGGAGCCATTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 17400-14957 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000019.1 Nostoc sp. T09 NODE_31_length_65648_cov_105.957367, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 17399 37 100.0 35 ..................................... CCGGGTGCTGTGTGGGTAGGGAGGATCGCAATATA 17327 37 100.0 32 ..................................... TGCCCCATCTTGCCTAATTGCTGTAGCTACAG 17258 37 100.0 35 ..................................... ACATCGGTATGGGCAAATTACACCGGGATTTACAA 17186 37 100.0 34 ..................................... TGGCCTTAGCTTGAGCATCAATATCATTAGGAGC 17115 37 100.0 45 ..................................... CACCTAACAGCGATTCCCTGGACGCCAGAGCTATTGGCAATTCAA 17033 37 100.0 33 ..................................... CAATGGAAGCATTCGCTGCTGTTAATGAGGCAG 16963 37 100.0 33 ..................................... TAATTCTATTGAGCTTAGTGGTTGAATTAATTT 16893 37 100.0 40 ..................................... ATATTCGCCATCAAGTTGGTTACTTGTAGCAAACTGGCAA 16816 37 100.0 38 ..................................... AAACTAATTGCCGAAGCTAGGGAAATATAAGCTAAGTG 16741 37 100.0 36 ..................................... CAGCAACAGCCTCCCTTTCCTACTAAGAGAAAATGC 16668 37 100.0 35 ..................................... TTAGAAGACTAAGAACTGTGTAAATATTAAAACCG 16596 37 100.0 34 ..................................... GAAACTCCGAATTTAGAAAGACGGGGAATAAATA 16525 37 100.0 36 ..................................... TATCTTTCTCCTGTTGATTTTGAGTTGGGTATTTAC 16452 37 100.0 40 ..................................... ATCAGATTTGCGTCCTAATTTATCTTTATTGATGTTGTAG 16375 37 100.0 37 ..................................... GAGCTTAGACTTTTCTAAACTAGCCCGTTTTTTTTCA 16301 37 100.0 36 ..................................... ACCAGCCGTGCCAATTGAGGCTGCAAAATCCCAAAA 16228 37 100.0 34 ..................................... CTTGTGCTGTAACCCCTATGCCACCCCCGGCAGT 16157 37 100.0 37 ..................................... GTAGTGGATCATTACGAGCAAACTTTAAGAACTGCAC 16083 37 100.0 34 ..................................... AATCCAGGTAGTGATGAATCTAAAAAAGCTTTAG 16012 37 100.0 41 ..................................... GAAAGAAGCTAAGCGAGTAATTAAGTGGAGCCGCCACGGAA 15934 37 100.0 35 ..................................... ATGAAAATAATGGTTGGGCTTGGTAACAAAACAAG 15862 37 100.0 39 ..................................... TGAGCAGATGGGGATATCCATTGCCGACAACGTTACAGC 15786 37 100.0 36 ..................................... GTGACAAGGTGGTTGCAACAACATTCTCTTCACCAA 15713 37 100.0 36 ..................................... CTCGCATGAACTAGCCTTTGTAAAAAAGATGAATTC 15640 37 100.0 35 ..................................... GGGATAAAACTGTGCAGAGCTTACAGTGGTATCCA 15568 37 100.0 33 ..................................... ACGAGCAAGTCAACATCAGGAGATGCAACGCGA 15498 37 100.0 37 ..................................... AGGGTAATTTTGGCTCAATATGGCAATTCCAACCGTA 15424 37 100.0 35 ..................................... AAAACAATTGCTAAAAAACTTGATAGCTCGACTAG 15352 37 97.3 34 ............................A........ TTAAACGGCATTTCACGCCATTAATCGAATAAAT 15281 37 100.0 36 ..................................... CCGAAAAATAGCCTGAACAATTTAAATAGAAAATGC 15208 37 100.0 33 ..................................... TTGCTGGTTTAGCCTGGTTTTCACTGAAAATAA 15138 37 100.0 34 ..................................... TTAAACGGCATTTCACGCCATTAATCGAATAAAT 15067 37 100.0 37 ..................................... GTGCAAAATGGCTACTACAGTGACGATCGCCTGATAA 14993 37 91.9 0 ...........T............C.......A.... | ========== ====== ====== ====== ===================================== ============================================= ================== 34 37 99.7 36 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : ACGCATTAAACTGTCATTTACTCTTAACTCGACATTGCGCTTAGTGATTTGCACTTTTTTGTCTCCGTGTCATGCCTGCTTTCATTAGCTTCTACACAAGTGGGTTAGGATTGAGAACAGCTTGCTGCCATGATAGAAAAGAAGCATCCTTTCATTATTTCTCTATCTCTCAAAACTGAAGAGTAATTTTGGAACAATTTTAATGAATGGCTAAAACATCCCATTGTAAAAGTGATGGTAAGGTAAGCTGGCGTCAACCACTAGGTGTTTAAAAAATCAAGAAAAATTTTGCACCTCAAAAGCTTACTCCCTCTAGCTTTGACCCCTTTTACACCAACTTTGAGGTTGACGCAAACTCGTTAAGCCTTGCTACACAAGCTTTTGGAGTGATTTTACTCATGACACCCTTGACAACTCAATGCCCAAAAAGCTACTTTGATTGGAGATTGACGCAACTGCACCTTGAAAACCAAATATATCAATGCTTTCAACTGCGGGCG # Right flank : CAAGTAATAAGTCAAACAAAATTCATCCCATCAATCAGCAACGCCATATCGGTGTTTATCGGTGTTCATCTGTGGTTATTTATTCATAACTGTATCAATCAATCTTTGCAGATATTGCGATCGCTCTCGCTTACATTGGGATTATTTTGCAGATAATCTTTGATTTGTAAGCATCCGTGCCGCTTCAGATCGTCTAAATCTAAATTCCACAGCTTTACCCCAGTATCCTCACCTGCACTAATCAGCGTCTTACCATCGGGACTGAAGCTGATGCTATTCACTTTCCCAGGATGACCCAATAGAGTTTTTAGTAAAGTGCGCTCGCTGATATTCCACAGCTTAATTGTACCGTCAGCGCTGCCAGAAGCTAGTATTTGACTATTTGGTAGAAAACTCAAACTAGTTACGCCGTCGGTATGTCCTGCAAGGGTATTGATTAAAGTTCCGTCGGCGACGTTCCAAATTTTGATATTGTTGTCCAAACTAGCAGTAGCGAGAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 11486-12391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000192.1 Nostoc sp. T09 NODE_320_length_47576_cov_100.111084, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 11486 37 100.0 35 ..................................... CGCGACTAATAAGGGTTGCGGATTTTTCCTCTAAC 11558 37 100.0 36 ..................................... ACAAGGTAGTAACCGCCACTAGTAACACCGTAGTAA 11631 37 100.0 35 ..................................... TACTCTGCGGTGTCCTCCCCATTGCGCTAGCTCAC 11703 37 100.0 40 ..................................... TTTGAGGTAGGGCGATTGCGGATCTGTGGTGGAGAGGCGA 11780 37 100.0 33 ..................................... GCCTATAAACTACTGGCTCATTATTGAAAAATG 11850 37 100.0 40 ..................................... TTGAGGTAAGTTACACATACATAATTTTGTGGTGCTTTAT 11927 37 100.0 35 ..................................... CCAGCCGTAGTTTCTGCGTCGGAGCTAAGAGAAGA 11999 37 100.0 35 ..................................... TCGAAACACAACTGAACACCTGACTTAATGAAACA 12071 37 100.0 35 ..................................... TCATTCTATCTATACATTTCTTTTCTGTATATTAC 12143 37 100.0 34 ..................................... AGGATGGCAGCAATTGCTTATGCTTACAATCAAA 12214 37 100.0 36 ..................................... GCATATGCGGTAACGGTTCCGCTTCCATAAGTAGAA 12287 37 100.0 31 ..................................... CAGGCGGATTGGCAACACCAGCTAACTTTTT 12355 37 91.9 0 ........................T.T.C........ | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 99.4 36 GTTCCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GACAAAGTAATCATTGCGGTCTGCCCAAGCTTGTTGCAACGACCGAATTAAAACATTCATCCCAATGCGGTGGCGATTACTTTCCAAGGGTTCTCCGTCATCAAATATTAAATCTGTTGGTGGTGGGGTAGGTTCCCAGTCTGGGACAGGCGGTGCTGGGAAACTCTGGTTTGGAGTAATATTAGTTGACATAGCATAACCTGATACATTTACGCGATATTTTTCATCTGTCCTTTTTCCTTTAAGTCTGGCGTCAACCAGTAGGTGTTTAAAAACAAGAGTCAAATTTTGCGCCCCAAAAGCTTACCACCTCTGGTTTTGAACCCTTTTACGCCTGTTTTGAGGTTGACGCAAACTCCCTAATCTTTTCTACACAAGCTTTTGAGCTTATTTTACTCATGTCATCCTTGACAACTCAATGCCCCAAAAGTTATTTTGATTGGAGGTTGACGAAACTGTACCTTGAAAACCAAATATATCAATGCTTTCAAGTCTTGGCG # Right flank : CTTAGAGGCGAGCTATAGAGCAATTGCAATTAATTAAATTGCACAAGTCCTGATATTTATCGGTGCGTTAAGCGTTGCTATAACGCACCCTACTGGCGTGGCAAACCTAAATTGGTACAAGAGAAAAGTTGATTTTATCGGCGTTTATTAGCGTACATCGGCGGTTAATTTCATCTAAGCTAATGCACTACTTTAGCGGTGTCATGCTATTACAATTTAAGCTTTACTTTGTCAATCGTCTCTAATTCTCTTTTCCCTGTTCCCTGTTCTCTCAGCTTTGTTAAAACAGCCATAGCCAAATTGGTAATGTAACAAGTAACACTACCGCCCCTGCTGCCAAGGCGGTTACAGCTAAGTCGCGATCGAGATTGAAAGTTTCGGCAATTACTAAGGTGGCAAACGCTGGTGGCATTGCCATTTGAAGCACAATTACTTGGGCTGCTGAACCAGTCACACCAAAAAGCGGTAAGGTACTGCCAAGAACTAAGGGAACTACCAGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 22420-22601 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000025.1 Nostoc sp. T09 NODE_39_length_37166_cov_104.065117, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 22420 32 96.9 42 ..G............................. TTACTGGCGGATGATGGAGGAACATCCATCGATGCGACTTTC 22494 32 100.0 44 ................................ AAATTATCGGCTTCTCCCGTGGTCAGAAAATCATGCTGGCTTTT 22570 32 96.9 0 ..............T................. | ========== ====== ====== ====== ================================ ============================================ ================== 3 32 97.9 44 AAATTAATGAAACCCGTTCGCGGGATTGAAAC # Left flank : GGTGATAAAGCTTCAATTTGGACTCTAGACGGTTTTGAAATTTTACTTCCTCTCAAACCAGAAATTATCGACTTTTCTCGTCGCATGGGCGAAGTCGTGGAAACTCTCGCTTTCGCAGAAACCAAATCGCAACTGGAAATTTTAGGTGAATTAATTACAAATGCACCCAACACCAGCATCCAAGCAGTCGTCACGCAAATCGCCACACCCAACGCCGATAAACTCAGCGGGGAAATCACTCTTCTTGGCATCGTTATTGAGAAACTGCGTCCCATTCATACTGAACTAGCTGATCGGGACTACATTCTCGCGCTTAAGGCTTATCAAGAACGCTTGCCTATTTACTGCACAGGTGACTTAATCAAGGAAAACGGTATATTCATTCTCAAAAATCCCCACCACTTTAGCTTGGATGATACTGGATACTATTCCTAGTAAAAAATATTTTGGCGAAGTTATTGAGTAAATATGAGGTAATTACTTGCAGTCAGTCTGGTAAT # Right flank : CTTTTAATTTAAAATTGGGTGAGTACAGATAATTTTAAGGGCACAACAATGTTGTGCCCCGTGTACTTTATTTAACTGAAAAATGCTCTATAATTATGCCTGCTCAACTATGATGCAGTAGTCTTAGATTTAGCCTCCAAATTTTCTAAGCGACTTCTCAATTCCTGATTTTGCTGCTTGAGTTGGTCGAGTTCCTCACGCAAAGTCCGCAGCGCATTGTCTGTGCCAATATTACTTTGGACTCGCGTAACTTCTTCATCAGCATAGCGGCGTACACGCCCATCTGGTGTTTGGTCAGCCAGCGATCGCAAAATTCCAATGGCTTTGGGTGTCTCCATTTGTCCTAATGCGATGACGACAGACACTTGGGTTAAAAAGAAGGTTTCTTTCGCTAGTTCTGCTAGTCTTTCTAAAATCCGTTCCAAGTTGACTGGATTTTGACCAACAGAAATTTTTCCTAAAGCGCGGATTGTCGCGAGGCGTAAAGCTTGGGGTACACC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTAATGAAACCCGTTCGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 19295-19641 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000248.1 Nostoc sp. T09 NODE_550_length_24939_cov_102.139900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================ ================== 19295 35 100.0 43 ................................... TTTAACTCTAATTGGCACTCGCAGAATAAAACATAGGAATTTA 19373 35 100.0 46 ................................... CGCGCCTCGCCGTTCACCGCCACCGCGTCGCCGCGCTCGAAGTCGA 19454 35 100.0 48 ................................... CAAAGATTGCTCACAGGCCGCGATGAATGATTCCTTCTGGCTGTTCAA 19537 35 91.4 36 .....A....T..........T............. CGTCTCACGGCAAGTGATGCAGCCAAGGTTATTCAT 19608 34 74.3 0 CC.G.A.....TT..T..............-...T | ========== ====== ====== ====== =================================== ================================================ ================== 5 35 93.1 44 GTTACGCTTACACTTCCCCCGCAAGGGGATGGAAA # Left flank : TACACGTTCTAATAATTACTATCCGTAAACTCAAAAAAAAGCAAGATACTGGTTTTACATCTCTACTTAAATTTGAGCCTCACACTACAACAAAATCAGGATATTAACGCTTTTATCAGTTAATTTGTCACTTTTTAATTCTTCACAATCGCTGAGGTTGACTAGCTGAGATAATTTAGCTAAGTTATCTCTGTTGCAAAATTTGAGCTAATTCTTTAAGTGGTTTCTCTATAGTTCAAAAATCAGAACCTTGAAAACTCAATAAATACAGTAGTTTTCTTGGGTAGGTTTCCATACTACCTAAGAATGAAAAATGCATTGTGCGGCCGATTCGGCAAATTGCTGAAAAGCTCATTCTTTCGTGGAATCGTCCGTTACCTTATCCTGTAAGGCTTTCAGAGATTTTTGCTTTCTATTTTTATGGCTGGAGAGAGACAAAATTACTATCCGTCGCAAACCGCCTCTAGAATTCATACAGGCCAAGGCTTCTAAATCGAGGG # Right flank : TGAGCCTATGAGTTACACGGCTATAAATTATTTAATAATCTCTTTCAGCAACAAAAATAAATCAGCAAATAAGCTCATATTTAGTTAAACTACCTGTTTTAGGAGGAATTAGAAGGGCATCAACAATTCAATCAGCAAACAGCACGCTGTATTGAATCAACAGAAAATAAAACAGTATGGCATACGAGGTAGAATATACAGACGAGTTCGAGCAGTGGTGGCTAACACTTGATGCAAAAACGCAAGTCTCGATTGATGCAGCTGTCACCTTACTTACAGAAAAGGGGACTAACCTTCCCTTTCCTTACAGTTCTGGTGTAAAAGGTTCTCGATACCAACACATGCGAGAACTTCGAGTACAACATCAAGGAAACCCATATCGCATTTTGTATGCTTTCGATCCTCGTAGAGTTGCGATACTCCTTTTAGGAGGTAACAAAGTGGGTAATGATCGCTGGTATGAGGAAAATGTACCAAAAGCAGATCAGCTCTATGATGAA # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACGCTTACACTTCCCCCGCAAGGGGATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 88500-89764 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000032.1 Nostoc sp. T09 NODE_50_length_114427_cov_106.299835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 88500 37 100.0 36 ..................................... TTGTCATCTCCTATGCCAGTACGAGTTACGCCGCAA 88573 37 100.0 36 ..................................... ATTGTAGGCAATATCATGCGCCTTAGTAACTGAACG 88646 37 100.0 37 ..................................... TAATGGAGTGGTACGCCCAGTGGTATGGAGAATATAG 88720 37 100.0 36 ..................................... CTAGCTTTTCCCAAGATGAAAAAACAGACGCGATCG 88793 37 100.0 35 ..................................... TTGGTGAATATGTAGCAGGTAAAAAAGCAGCCAAG 88865 37 100.0 35 ..................................... CGACCATCAGCAGAAATCACGCTGCCATCATCCCC 88937 37 100.0 33 ..................................... CTCTTTCTAGGATTCCTCTTACTAGGATACTGA 89007 37 100.0 33 ..................................... ACATCTTTACGCAATACCGCAGCTGATAAATAC 89077 37 100.0 34 ..................................... GGCGCAACGAGCCGGACGTGATGCAATTCACGAT 89148 37 100.0 32 ..................................... TCGCCTCGGCTCAAAATGAGTTAAAGCTCGCA 89217 37 100.0 34 ..................................... GAAATATTGGATGATAATGGCTTTCCGTAACAAG 89288 37 100.0 32 ..................................... ATAGACCTTGTTAACAGCCTCACTCTGCTGAA 89357 37 100.0 38 ..................................... CTGCAACAACAAGTTTCGGTTTGACGACCTTGAATTGC 89432 37 100.0 42 ..................................... ATCTCAGCGCCAGTAATGGCTTCTGCAAAGTGCGACTGCCAA 89511 37 100.0 35 ..................................... AAAAATCATTTGCTCGGCGCGAGGGCGATCGCATT 89583 37 100.0 35 ..................................... GGTTATTCATATGGCGATCGCCTCTCTATTTATAG 89655 37 100.0 36 ..................................... CGGAGAGCGCTGCTAGGCGCGAGGATTGCCTATTAG 89728 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 100.0 35 GTTCCAATTAATTAAAATCCCTATCAGGGATTGAAAC # Left flank : TTTCCCGGCGGAAATTCGCTTAAGAAAGCAATCAATTAATATCAATGGCACAGAAGTACCTCTACAATCAGGCATGTCTTTGAGTGCTAATATTAATGTCCGCAAACGCACTGTCATGAGCATTTTTACAGACAAGTTTTTAGGTAAGGTTGAAAGTCTGAAATATACTCGTTAAAGCAATACAGTTCCAATCAGCCCTGTGGTTAACATCCGGAGCAGACTTGACCACAGTGTTTTTCGCTTGAGTCTGGCGTCAACCAGTAGGTGTTTGAAAACAAGAGTCAAATTTTGCGCCCCAAAAGCTTACTGCCTCTGGTTTTTATCCCTTTTGCACCTAGTTGGAGGTTGACGCAAACTCCTTAACCCTAACTAGACAAGCTTTTGAGCTTATTTTCCTCATGACACCCTTGACAATTTAATGCCCCAAAAGTTACTTTGATTGGAGGTTGACGAAACTGCACCTTGAAAACCGAATACATCGATGCTTCCAACTCTGGGCG # Right flank : CAGTGCGACTCGTTTTTGAGAAAAAAATACAAGTAATTGTATATAGCTCAAAGTGAGAACGACAAGGATGAAAAAAACCTTGAAAATTCCATAACTAATTCTTAGATGTAGGTGCAAACCCTACCCTGGAAAGGAAACAGTGACTCCCAATCTACCCACGCCGAGTAGACTCGGAATTCTACAGAGCGAAGCTGGGAATAAGGGCGCAATCAGAGCCAGAAGCAGATATGGCACACTGGCGCTAAAGGGGAGATAGCATGGATAAACAAGACCTAAAAAAGCGTCTGAATCCCAAGCGGTAATCTGAATTAAAAATACCGACTTAATATTCGATTTCTCGCAACAATATTGTTTCGTTAGTTGCATTCCTTTGAGAAGAATATAGGCGAAATGGTCTGTCCTAAACTATCAAAATAATCACAGAATTGGAACGAGTAAAAATGATGGTGGAGTCCGGGGAAAAGGTCGAAACCCCAGTAGGTAAGACGAGATACGTAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 16730-18574 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000262.1 Nostoc sp. T09 NODE_775_length_43677_cov_107.802574, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 16730 37 100.0 35 ..................................... ATGCCTTGGGATTTTCGCAAGCGCTCTTTAAAACT 16802 37 100.0 36 ..................................... ATCTCTACGGATAACATTAACGGATACCTCTACGTT 16875 37 100.0 33 ..................................... AAAGATTTAAACTCTCACGCTTGCCAGGTTGCA 16945 37 100.0 32 ..................................... AGTTCCAGCAGTACGAACAGAACCAAAAGAAA 17014 37 100.0 35 ..................................... TTGACCATGCCTCAGCACCTTCTAGAGTGCAATTC 17086 37 100.0 42 ..................................... CTATCTCGTGTGGGCATTCTACCGAGAGTGTGAAGCTATCAG 17165 37 100.0 41 ..................................... AGCCAGGAGAATCATCGATCGCAAGCCAGAAGGCGGATATG 17243 37 100.0 35 ..................................... ATTCAATTGGCAATTAAAAAGATTCAAACAGCAGG 17315 37 100.0 34 ..................................... GGCAAAGATTCTCAAGCTGCTTTTGCTATTCAGG 17386 37 100.0 32 ..................................... TGTTTTAGTCGATTATTCTGTTGTAGAAGCTG 17455 37 100.0 33 ..................................... TAAAAATCCCTTAGCATCATCCCGACTTACGAT 17525 37 100.0 38 ..................................... ACGCTGTTGTTTAATCTGGGGGTTGAATGACGCAGATG 17600 37 100.0 36 ..................................... TCGCTGGTTATGGGGAAACAATTGGAAGCGGATAGA 17673 37 100.0 36 ..................................... CAAGCATATAAAGGCTTTTGCCACTTCCGAATTTAC 17746 37 100.0 38 ..................................... ATTAGGAGTAGTTAGTGCGGGAATTGTCAGTACAAGCA 17821 37 100.0 36 ..................................... TTGTCATCCCTGGAATTCTGGACACAATCGGACAGC 17894 37 100.0 33 ..................................... CACCCTCGCACTCAATGTATTTAGCCCAGAAGC 17964 37 100.0 33 ..................................... GATGCTGTAAGCGGTGGCGCGTGTTGCGCGCGC 18034 37 100.0 35 ..................................... TTAGCTTTGCCCTTTTCTGTTTTTGCCCCTGTTGA 18106 37 100.0 34 ..................................... AAGTATCAGCTTAGGGTGTAAGTAAAAATCCCCA 18177 37 100.0 35 ..................................... AGTGCGGCTGGAAAGAAAAGCAAGAAATCCAGACG 18249 37 100.0 35 ..................................... AAGTTTAGATTTTTCTAAGCTGGCCCGTTTTTTCT 18321 37 100.0 36 ..................................... TGGCTGTTATTTAGCGACTGCTTCATGTCTTTAAGG 18394 37 100.0 34 ..................................... GGCGATTGGTCGAGTTACTGGGGTAATTACAAAT 18465 37 100.0 36 ..................................... GAATCCAATCAAAGTTGCCGCCAATTAATCCAACGA 18538 37 97.3 0 .................................C... | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 99.9 35 GTTCCAATTAATTAAAATCCCTATCAGGGATTGAAAC # Left flank : TAGCGGTCTAATAGCTGTAACGGTGCGCCACAGCTATTGCAAAATTTGTTTCCCCAAGGTTGAGGATAGGGACGTTGACAATCAGGATTTATGCAGTGAACCGCACTCTGAGTGATGTGGGACACAACCGCTAAAATACAAAGGCTGACTTGATTTTAGCGTTTCTTTAGGTTTCTGGAATTTAAAGGGTCATTGAATTCATCGGTGGCATAATCCCAATCATTACCACAGTGTTTTTCGCTTGAGTCTAGCGTCAACCAGTAGGTGTTTGAAAACAAGCTTCAAATTTTGCGCTCCAAAAGCTTACTCCTGCTAGTTTTGAACCCTTTTACACCTATTTTGAGGTTGACGCAAACTCCCTAACCCTTGCTATACAAGCCTTTGGAGCTTTTTACCCAATGACACCCTTGACAAGTCAATGCTCGAAAAGCTACTTTGATTGGAGATTGACGCAACTGTACCTTGAAAACCAAATATATCAATACTTTCAACACCGGGCG # Right flank : CTTCTTTAAGGTTTTTTAAGCCTCTCCCCGCAACGGGGAGAGGTTTGGAGAGGGGTTCCGTTAATACATAGAATGAATTTTGACTTCTGCGTAGCGATACTAGTCGTTATATCCATCCCAAATCATCGGAAAACCATAATCTGAAAATGCAGGAAAATCTTGATAATTACTGCGGCTTTCTTCATCAAGAACTTTGACAACCTTGTTATACATATCTTCTGCTTGTTGTAGGGAATCACCGATGCTAGTTATTCCCAATTTGCCAAATTGAGAAAGACAACCCATGAGATGAAATACCGTACCTGTTTCAGTGCAGCTATCAAAGTGCAATCTGTGGTGGGCAACAATATCCATTAAATCGTTGGGTAATAATCCCTGATAGCGGTCTTTTTGGAGGTTGTCGGTCGCAATGTAGTATTTAGGACGCCCTTGCTGACTGTAAAATAATCCTGTAGATAGGTCATAGCGACCGTTCGTTAATAATTTCAGAGTCATGAAAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 1 17409-16858 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000058.1 Nostoc sp. T09 NODE_91_length_38578_cov_104.847946, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 17408 37 94.6 40 .........C..T........................ TCGCTCTTTGATAAAGTCGCCAGTTTTCCAAACTACATAA 17331 37 94.6 35 .........C..T........................ GCTATAAGTTCTCGCTTCGGGAGGTTCTTGATATC 17259 37 94.6 38 .........C..T........................ ACGTACAAGAAGAGCAGCGAATTAATCTGGTAAAGAAA 17184 37 100.0 34 ..................................... GCAAGAACCTACGGAGACTAATATGAGCCTTTTA 17113 37 100.0 41 ..................................... AAGCACCCGCTCAATCTCCAACAGTTCTGATGTATCGGCAT 17035 37 97.3 34 .................C................... TTCATCATATTCATGAGTGACAACGTGCTTCATC 16964 37 100.0 33 ..................................... ACTTGCTCCCACACAGGGTAATAAATCCAAGCG 16894 37 94.6 0 ............T.......T................ | ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 97.0 37 ATTGCAATTAAAACTAATCCCTATTAGGGATTGAAAC # Left flank : GGCGATCGCCAAGCATCTCGAAACGCTGCGAGTCAGTTAACACGGGACTTGAAAATTGCTTTAGAGCAGTTAATAGGTAGTTGATGAAATACTATTAGTTATAGCAATCCTAAATGAGTTGTGAAATGAAGGAGTTGAGTCAGGGAACAGGGAACAGGGAACAGGAAAAAAGGATCTACAAATGCACTTTGTTTTTTCACAAATGAAATAGGACTGCTATATATGTCCATAGTGTTTTGAGCTTGAGTCTGGCGTCAACCAGTAGGTGTTTGAAAACAACAGTCAAATTTTCCGCCCCAAAAGCTTACTGCCTCTGCTTTTGAACCCTTTTTCACTTATTTTGAGGTTGACGCAAACTCTCTAACCCTTGCTATACAAGCCTTTTGAGCTTTTATCCAATGACACCCTTGACAACCCAATCCCTGAAAAGCTACTTTGATTGGAGGTTGACGCAACTGTACCTTGAAAACCAAATATATCAATGCTTCCAACTGCGAGCC # Right flank : GCTTCAACAGTTATTTACTGTCACTATTGGCAGGTCTGCTTATTGCCTTAATTGAATTGCCAAATATGGATAATGCTGTCCTCATTGCTACTGGCAAGAAACTTTCCATTTGGGCTAATAGCAACCCTCAAAACCGCACTAGAACCATCTTGAAAGGTGCCCAGCAATTTTAGCGTGTCTAGGCTCCATAGTTTAATAGTGCCATCATCATTGCCGCAGACAAGAATTTTTCCATCTGGGGTGATGGTCAGGGATTTAACCGAACTAAAATTTTCAGAAAACTCATGCAGCAGTTTTCCAGTTTGGAGATTCCATAACTTGAGGGTGCTAATTGCCCGATTTCGAGAGACTAGCTGACCAAAACTACCTGTAACGAGCTTTTTGCTATCTTTCGTAATGGCAATAGCATCAACTGGGATTTTATGTCCTTGGAGGGTATAACCTATTTTGCGATTTTTTAAATCAATCAGCTTAATTGTATTGTCATCACTACCACCAGT # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : ATTGCAATTCAATCTAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 4026-3348 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000113.1 Nostoc sp. T09 NODE_172_length_5502_cov_95.657944, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4025 37 100.0 35 ..................................... AAAAACAAAGGGAATTACTATCGATGAAATAGCAG 3953 37 100.0 31 ..................................... ACTGTAAAAATGTTCAAAGATTGGGCGGAGG 3885 37 100.0 37 ..................................... ACCTGCTCAGTGATCGGCACCTCATTAAACCCATCAG 3811 37 100.0 32 ..................................... ACGCTCTTTATCAGAAATACCCTCAGTGGGTA 3742 37 100.0 33 ..................................... TTAAATGAAGCTTATGGTGTATTTGCTTGTCGC 3672 37 100.0 34 ..................................... CTTGAATGGCAAAGGAAATATAACAGAATTAAAT 3601 37 100.0 36 ..................................... CATGTAGACCATAATCATGATACTGGTAAAGTCAGA 3528 37 100.0 37 ..................................... CAGATATGCAAGGTGATGACTGTATCTGTATTGGTAG 3454 37 100.0 33 ..................................... TATTGTTTCCCATTGCTGGTCCACCCGAAGACA 3384 37 97.3 0 ..................A.................. | ========== ====== ====== ====== ===================================== ===================================== ================== 10 37 99.7 34 GTTCCAATTAACCAAAATCCCTATCAGGGATTGAAAC # Left flank : TTTGTGCGTAAAGTTACTTGTCATTATAAATATGGCAGAGGGTAGAAAGCAGAAAGCAGCCCCAATAACACAAGTTTCACTGCCAAGTAGGAAAAAATCTCACAACCAAGCATAAAAATCCCTAACTTCTATTTTTAAGAAAAACTGAGAGCATCCATTGTTATTTCCTCTGTGCTTACTGTCCAGGTAAAATTGAATTCATCAGCGGCGAAATGCCAATCGCTACCACAGTGTTTTTCGCTTGAGTCTGACGTCAACCAGTAGGTGTTTGAAAACAAGAGTCAAATTTTGCGCCCCAAAAGCTTACTCCTAGTGGTTTTGAACCAGTTTTCACAGAGTAGGAGGTTGACGCAAACTCCCTAACCCTCTCTACACATGCTTTTGAGCTTATTTTACTTATGACACCCTTGACAACTCAATGCCACAAAAGCTACTTTGATTGGAGGTTGACGAAACTGTACCTTGAAAACCAAATATATCAATGCTTCCAACTCCGAGCG # Right flank : TATTTTTTGAAGCAATCACAGGAGGCGTTCTCTTCTTCAACCATGATAGGGCGAAACTCTTTACGGGAAAATCAAAGCGATAACGGTAAACTAGCAGATAAAACTGTTACCTGCTGACGCGATGAGCTTCTGCATCAATCCTCACTGCCCAAACCCGCAAAATAGCGATGATGAACTATTTTGTCTTAGTTGCGGCTCAGAACTACTACTACAAGGCCGTTATCGAGTCGTGTGTCTGCTAGGGGGCGGTGGGTTTGCGGTAACTTTTGAGGCGATAGAAGTCCGGACTAACACGCCCAAAGTTCTCAAAGTCTTAACGAACAATCATCAAAAAGCAATCGAACTATTTCAGCAAGAAGCAGAAGTTTTAAGCAAGCTTAATCATCCAGGTATTCCCAAAGTTGAGCGCGATGCTTACTTTGTCTATTTTCCCAGAAACAGCCAAAACCCAATCCATTGTTTTGTAATGGAAAAAATTGTGGGTATGGATTTGCAGAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAACCAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 41975-42296 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000117.1 Nostoc sp. T09 NODE_184_length_42630_cov_108.613815, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 41975 37 100.0 34 ..................................... GTTTTTTGCCAGCTATTCGGCACCATGATGGATT 42046 37 100.0 35 ..................................... TATGTACTTCTATGCATTCTATTTCACCTTTATAG 42118 37 100.0 34 ..................................... CCAAGGCGGAACCTCTGCAACTTTTTTCGTCAAA 42189 37 100.0 34 ..................................... CAATAACAAGTGCGGACAACTAGCAGAATTAATG 42260 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 100.0 34 GTTCCAATTAATTAAAATCCCTATTAGGGATTGAAAC # Left flank : GAGGCTGGATGTGTGGCGAAGTTGAAAGCAAGCAATGGTTTAACCCCTCATCTGCCATTATTTGGTATTGTTCAGCAACTCGGCTTGCATGGGGTGCTATTCCTCCGACTCCTCCAAATAGGCTGAGTACTAGATGGTTCATTTTCCCTGACCATTGGGGAAGGGTTCTAGACAAGCGCAAAACAAATAAGTTAAATCATAAAGTGTATCTTTACCCAAACTGGCTTGTACCACCAGAGTCAACCATCAACAAAGAGGAAATTATTGCCCATATTCAACGCTTAGCCGAGCAATAATTTAGATACAATGCGACATCAAAACGAAGTGTAAATGCCAAAGGTCGAGGTTGACGCAAACTCTGTAAGCTTTGATATAAATTGATTTAAGCCATAATGTATTGCTTTGCCCAAACACATTCAGCCTGAAAATGCTATATTTTATTCAAGTTGACGCAACTGTACCTTGAAAACCAAATATATCAATGCTTTCAACTGTGGACG # Right flank : TAAGGATTTAAAATATGCCTGAACCTTTCGTTGACCTTGACGCAATTTTTAATCTTGCTGTGAAAGAAACCGAAGAATTGATGAAACTTGGCTTTGATATTAGCGATTCTTGTGCTGTAACATCACTAGAATGGTATGCCAATAAATATCCAGAAATTGCAGAACGCTGCAATAATGCTCTGCTAGAACTGATTGAGAAGCAATCTGCGGCTACTCCTGCATTTGTGGGTACTACATACTCTGACAATGATTTAGATAACTTTTAATTTGAAAATATTTGTGAATTAGTATTTGCTAAATACTTTTATAATTTATATTCCTGTAATTTAGCTATTTAACCTGAGTTCGGGATAACCCGAAACCCTCATTACTCCGTTGCTTGATTCTAGGATCT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 9625-10688 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000118.1 Nostoc sp. T09 NODE_186_length_20250_cov_108.201927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 9625 37 100.0 33 ..................................... GCAACGTTAGCCCCAGGATTAGAGGCTAGTCCA 9695 37 100.0 33 ..................................... AAAGAACATCGTAAAAGAACATCGTAAAAGAAC 9765 37 100.0 37 ..................................... AAGAAACCATAAGATACAAGCTTATCTAGGTGAGGTA 9839 37 100.0 35 ..................................... GCATCTTTAGTTCTTGAATCTGGTGGGAATGAAGA 9911 37 100.0 34 ..................................... ATTTTTTTGTACCTATTAACTAATGACTATTAAC 9982 37 100.0 38 ..................................... GTTTCAGGGATATGAGGAGTAATTGAAAGAGAAATGCA 10057 37 100.0 36 ..................................... GTGCCATAAGCCACGAAATTCTTAGACACAAAAATC 10130 37 100.0 38 ..................................... CATTGATTTGGGTATTACGGTTTATCAGTACGATGGGG 10205 37 100.0 35 ..................................... ACAATATTAATCAAAGGGAGTAAAGGAGCGCTAGA 10277 37 100.0 39 ..................................... CTCTTCCAGGTCGAGTGACTTTGCGATATGAGTTCCAAT 10353 37 100.0 42 ..................................... TATCAGTATGATGGGATTGATACAACAGACATAGTTAATCAA 10432 37 100.0 38 ..................................... AGTTCAAACTCTCTTAAAAATTCGCAACATCCGACCGC 10507 37 100.0 38 ..................................... TTAACTTGCAGTTGGCAGCGTATCGGCTGGCCTGCTGC 10582 37 100.0 33 ..................................... GATTCAACCCCTAGCAACTGGAAGGACTTGCCA 10652 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 100.0 36 ATTGCAATCAATTAAAATCCCTATTAGGGATTGAAAC # Left flank : AAAAACTCAAAGCAAAACAACGAGAAGCTTTAAAAAATCAGGCCAAAGAATGGCTAGCCAAATTAGATCCATTCTCACCAGAAGGGCTGTGGTTTGAAAGATTTGCTGAAGCATATCCTTCAAAATTAGAGGCAGCGATTGAATATTTGCAAAATAATTAGTAAATGTAAGATCAGAAAACTTTATAGGAAATTCAATTCATCAACGGCGAAATACCAATCGATACCAGAGTTTTTTTTGCTTGAGTCTGGCGTCAACCAGTAGGTGTTTGAAAATAAGAGTCGAATTTTGCGCCCCAAAAGCTTACTGCCTCTGCTTTTGAACAGTTTTGCACCTATTTGAAGGTTGACGCAAACTCTCTAACCCTTGCTATACAAGCTTTTGAGCTTATTTTATCCATGACACCCTTGACAACTCAATGCCCCAAAAGTTACTTTGATTGGAGGTTGACGCAACTGTACCTTGAAAACCAAATATATCAATGCTTTCAACTCTGGGCG # Right flank : CTTAATATTTAATTTTGAAGTCAAAGGCGAAAAGTGCGTTAGAGCAAACGCATCTTATTTACTAATAAAAACTAATAAAGATTTCAAAATGCTTTAGATAATGGCACAAATTAAGAAAATGATATAGCGTTTACCAAGCCAGTGAGGTACAGGAAGAAGTAATTAACTACAGATGAACACAGATAATTTCGTACCTTAGCAGAATGGGAACCGCTATAAACAAAATCAATCATTTGTATTATTCGCGTGTAATTTTCGCGAATAACTCTTTTTTTGTCCAAAGTCAAAAAGTAATACTCTGTATTCAGAGAAACTATTTATTCAAAGGAGCGCTCAGTACGTGAGAAAGAATGTAGTTTCGCTACTGGTTGTGTCGGTAGGGGTTCTAACTGCATGTATTGGTTTGTTTACACCCGCCAATGTTTATTTCCTTAACTATCGTGACATGAGCATTAGCGGGTGGTATGACTTAGTAGCCATTATAGGTTTAGCGCTATATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATCAATTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 74034-75151 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTAV01000121.1 Nostoc sp. T09 NODE_191_length_113496_cov_102.965401, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 74034 37 100.0 34 ..................................... ATTTCATGATCGTAATTACTGCTTTCAGTCCGGG 74105 37 100.0 35 ..................................... CATCGTCAAAACTACTCTTAAGGCTCCCGTGAAAA 74177 37 100.0 34 ..................................... TTCATTGTCTTCATTGGATTCTCCAAAGCTTTTG 74248 37 100.0 34 ..................................... CATGCAAAAGCGAAATACAATCCATTTTTTACCA 74319 37 100.0 35 ..................................... CTGACTTACAAAACTTACATCAACCCAGGACAAGG 74391 37 100.0 36 ..................................... TGAACAAGCAGCGGCGAGAGTCGGTACCATCCTTAG 74464 37 100.0 32 ..................................... TACATAAATCAGCTACGGCTTCTTGCGGAGTA 74533 37 100.0 35 ..................................... ATCCTCCCACGCTAAACACTGCCTTGGCTATCACA 74605 37 100.0 41 ..................................... GGTTTCGATGTCTACAATTTATTGGGCAAAGAATGCAAAAT 74683 37 100.0 34 ..................................... AAAGGAAGGCGTACTCAAGGGGAGATTGCTTTAA 74754 37 100.0 35 ..................................... AGTTTTTTAGGAGAATTCTGCTGGATTCATAAACT 74826 37 100.0 38 ..................................... GCCAACAGTACGCCCTAATAGCACCATCCGAGGCTTTA 74901 37 100.0 34 ..................................... CAAGATATTCGCGCCAAATGGACTTAATGGACTC 74972 37 100.0 35 ..................................... TTTACTTTGGGATAACTCTCGTCTATGGATGGATG 75044 37 100.0 34 ..................................... ATTTCTTTCTTAGGAACAGAAAGCCAGCAACTTC 75115 37 91.9 0 .............A..................AC... | ========== ====== ====== ====== ===================================== ========================================= ================== 16 37 99.5 35 GTTGAAATACAATCAAATCCCTATTAGGGATTGAAAC # Left flank : GGTAGAATTACAGGTATGACCCGTTATGCTTGTTTTTGGGTAGAGAAAGGAGAGATTATCGCCCCCATCGAAAACTTGCGTTTTGATGACAGCCTCTATCGCTTTTGGGGAGATAATTTAGTTGATTTTACCAATTTTCAAGAATTTATCCCCGAAGTCGGAACCTACGAAAGCCGTCAACTTGGAGGTAGCCTGGTTCCAGGGATGTTGGTAGAAGATTTTACATATACCTTGTAATTAACTACGGAATTGCGTCAACCAGTAGCTGTTAAAGAAACGAAGTGCGAAATTTTAGCTGAATTTACTGCTGTACAAAGGTTTGAGCCTTATTACCCAAAAAACAGGTTGACGCAAGCTCTATAATCCTGATTGGGAAAGGATTTCAGGAAAAAACTTACCTCATCTCTTGACGATACCTAGTGCTGGAATGCTAACATGACTCCAGATCGACGCCACCGCACCTTGAAAACTAAATACAGTCTGCCTTTCAACACTGAGCG # Right flank : CACAAGCTTAGCTATACTATCTATTTCTGTAAACTTCATTGATTAGAATATCTTTAACGCTGAAGTAAATAATTAATATAGTTAATAAAAACTGGGCAAATTGTAAAATTGGATCTAATCGCCAGCCCTGAAAAACAAGAATAAAGCCACAAAGCAACATGACACTTGGTATCAAGAGTGCTTGAAGAAGATAAATAACCAAAGCTATACTGTTAAGTCTGCTAGCACGTCTAAATAGCAAAAATACCATAAAAATCATATAAGATATACCGAAGATTATATATAGTATTCCCATCAAGCTAGCTGTATTTAAACCGAAATTAACTTGCATAAATAATAAAGCATTCAAGATGGACATAATATATATGATTCCTCAATATTTAATGAATTTATCTACTAATAAAGTTCAGTTAGGCTGGAATAATTACAACGTAGGAGCACGGCGCTAGTAAGATTGTCTAGTTGTGAAAAATATTTTCGATGTTCCCTACAAAGATCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATACAATCAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //