Array 1 1376711-1374546 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDQJ01000001.1 Ralstonia solanacearum strain CFBP3858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1376710 29 100.0 32 ............................. ACGGGCGGCTATGTTGGCGGCGCAACAGCACA 1376649 29 100.0 32 ............................. CGCGCCATGCGTGAGGTGCCCGTCTCTCCGGG 1376588 29 100.0 32 ............................. ATGTCAGGTTTGTTCGATCAGTTGGCGAGGAA 1376527 29 100.0 32 ............................. TTTTTGCCATCTCCCCAATGAGGGAGTTTTGA 1376466 29 100.0 32 ............................. GCGTTTAGCCTAGTCTCCGAAGCATAGGCCAT 1376405 29 100.0 32 ............................. ACCTTCGTTCTGTCGAAGTTTCCGGCGATCCA 1376344 29 100.0 32 ............................. GAGCCGCACGCTAGCCCCGCGCAGAGGGCAGC 1376283 29 100.0 32 ............................. CTTCTCGCATGGATTCGCGGATACCGTGGTCT 1376222 29 100.0 32 ............................. GCGTATGAGGCTGAACGCTCGCGCATTGCTAG 1376161 29 100.0 32 ............................. TCCTACGTCGGCAGCACGGTCATGACCACGCA 1376100 29 100.0 32 ............................. TGAAACCGCACATCCTCATACATGATGGCGTG 1376039 29 100.0 32 ............................. ACGGTCTACACGCTTGAGGATGCGCTGAACAT 1375978 29 100.0 32 ............................. CCCGCGCGTCCCGCATTCGTGTCTCCACGTCG 1375917 29 100.0 32 ............................. TTCAACAATCAGCGCGCTCCTCACTGTCGGCT 1375856 29 100.0 32 ............................. GTCAGCGTCACGCTTGTGCCGCCTCCGATCAA 1375795 29 100.0 32 ............................. TTCGGTCAAGCGCGTCGGGCAGCGAGTGGATT 1375734 29 100.0 32 ............................. GCTGATCCCGTCGATAGTTTGCGTGGTGCTGG 1375673 29 100.0 32 ............................. TTCGGGATGCCACCGGCCTTGTCGACCGCGCC 1375612 29 100.0 32 ............................. ATTCTCGACGAGTCGTTGATGATCCTGGAAAA 1375551 29 100.0 32 ............................. ACAACCTATACCCGCGCATTCGTCACTGGTTG 1375490 29 100.0 32 ............................. ATTTACGACACGCGCCGCGTGCTACGCATCAT 1375429 29 100.0 32 ............................. GCTCTGCCTGCCCCGTGCACGCTGCTCGCGTG 1375368 29 100.0 32 ............................. CAGGTCGTCATAGGTGGCTTGCAGTTGCTCGG 1375307 29 100.0 32 ............................. TTCACCGTGCCAGGCTGCTGGCGCTGCCATGC 1375246 29 100.0 33 ............................. CCGCGCGCGAGCTGTTGCAGGTGCGCGATGCGC 1375184 29 96.6 32 ............................C GTAATCGGGTTGGCATTCAGGATCGTGCCTGC 1375123 29 100.0 32 ............................. GCGTGCTGCTGATGATCGACCGAATGGAGGCC 1375062 29 100.0 32 ............................. CTGTCCCGCAGCATCGTCAGTCCGGCTGAGCA 1375001 29 100.0 32 ............................. CCACCGGACTGCGCTTGAGCCGGCGCAGCCCC 1374940 29 100.0 32 ............................. ATCATCAACGACTCGTCGATGATCTTGACCGG 1374879 29 100.0 32 ............................. CTAGGAAGGAGAACAAGATGATCGAAAAATGG 1374818 29 100.0 32 ............................. TCAAAGTTGTCGGGCAAGACGAGGACGTGTCA 1374757 29 100.0 32 ............................. GCGTAGGCCAACTACAGCATCCATGACGTGAG 1374696 29 100.0 32 ............................. GTTTTCCACGCGGGGAAGTACGACCCCGCGCA 1374635 29 100.0 32 ............................. GGCAATCGCCACTGGGTGAAAAGCTCGCGAAC 1374574 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.9 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : TCGCATCATCCCGGCCATCGAGGAGGCGCTTGCGGCGGGCGGGATCTCGCCCCCGGACGCACCCCCGGAATCCGTGCCGCCCGCCATTCCCAATGCCGAGGGCCTTGGCGACGCTGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTCGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGTTGCTGGAGGTGCGCGCCGGTGTATACATCGGCGATATCTCCCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTACGAATTCCAGACACTGGGCGCCAACCGCCGCCTTCCAGTCGAATTCGACGGACTGCAGCTCGTGGCTTTTCAGCCGGCGGATAAACCTGCTCTTTGACAACGCGAATAATCGGTACGTTTTGGGCGGCTGGATTTTTTGTTATTAATCAATGGGTTGTGTTAAGT # Right flank : ACAACATCGCTGCAGCGACCGCCGCCATGCGCGTGTTCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCGATGCCCCCCCCCCGCCGTTGCGTCGGGTTCAGGTGATCCAGTACCACGACCGGCACCGCCTGCAGCCCCAGTTTCATGGCGGCAGCGAGGCGGCCGTGCCCCGCAACGATGACGCCATCACCGCCGGCCAGGATCGGGTTCGTGAAACCGAACTCCACCATGCTGGCGGCGATCTGCGCGATCTGTTCGTCGGAGTGGGTTCGGGCGTTTGCCGCGTAGGGCGCGAGTCGCTGAATCGGCCAGAGCTGGATTTTGTCCGCGAGCCACGAGGCCGTCATTGCTCCACCTCCGCGTGCGCCAGCCGCTCGGCAGCAACCTCGGCAAAGGTTTGACCGGTGGACTGCAGCGTCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1387443-1385645 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDQJ01000001.1 Ralstonia solanacearum strain CFBP3858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1387442 29 100.0 32 ............................. TTCATCGCCAACAAGACCTCGCCGGCCCAGCC 1387381 29 100.0 32 ............................. ACGCAGCGATGACGATTCCGATGGCGCAGCCG 1387320 29 96.6 33 ............................A GGACACGTTTCATTCGCTGACCGATGCGCTCGG 1387258 29 100.0 32 ............................. AATGTCGTGTTTGAAAAATTGAGCGGTCTTGC 1387197 29 100.0 32 ............................. ACCGGGTTTCAGATTGCGTCGCGCGACACGCC 1387136 29 100.0 32 ............................. TGTTCAACGTCGGCGCAGCAACAGCAGCGACC 1387075 29 100.0 32 ............................. AAAATTAAAACTGGCGTAATCATCCCCAAGAG 1387014 29 96.6 32 ............................T GCCGAACCCGAACACGGGGCGCGTACTGACTA 1386953 29 100.0 32 ............................. CGTGGGGCGCAACAACCGCAGGCCGACACTGA 1386892 29 100.0 32 ............................. CGATCCGCCTGTCATTGATGAGCGGACCAAAG 1386831 29 100.0 32 ............................. AGACCCGCCTTTTTGAGAATTATGGCGCCCAG 1386770 29 100.0 32 ............................. AAAAATAGCGATCATCACCCCGTTTATGCAGC 1386709 29 100.0 32 ............................. AACGCGCACTCGGCCTGCTCGCGGTCGATGCC 1386648 29 100.0 32 ............................. TCAGCACAGATGCAAACGGGAATTCGGACGCG 1386587 29 100.0 32 ............................. ACTACAGCGCGGATCGAAAGAGCGTCGAGATC 1386526 29 100.0 32 ............................. AAATGAATTCGCGCGCTCTCACTATCCCAGTT 1386465 29 100.0 32 ............................. ACTTCTTCGCGGATATGGGCGAATGCCCTGCG 1386404 29 100.0 32 ............................. TACGGCGCATAGCGGTTCGGATAACTCTCGCT 1386343 29 100.0 32 ............................. TCGGGCGACACGTGCGCGCAGGCCATCAGCAG 1386282 29 100.0 33 ............................. CTGGACTTCGACGGCCTGGCCATGGCAGCGAAC 1386220 29 100.0 32 ............................. GGATGGATTTGCAATAGCGCGGATGATGCAGC 1386159 29 100.0 32 ............................. TTCACGATTGTTGTCCCACTTCACGATCACCT 1386098 29 100.0 32 ............................. GCAGCACCGGCTAGCTGGCCGTCGGTCTACAA 1386037 29 100.0 32 ............................. GCCCAGGCATCAACTGTGGTCGGCGCCCAGAC 1385976 29 100.0 32 ............................. GCGACGTTGGCGGCGGCGATCGACGCATAGTT 1385915 29 100.0 32 ............................. TCGGTTCTCGCCACCGGGCCGAGTGAAACGGC 1385854 29 96.6 32 .C........................... GTGATCCAGATCTCCGATCCTTCCTTACGGAT 1385793 29 100.0 32 ............................. GTGCCGGCGACCAAGCGGCGCTTCGGCAAGAA 1385732 29 79.3 30 A..........TCA..........TG... CTGCGCCAACGGCTTACCGTTGATCGTGCC 1385673 29 75.9 0 .C..C......A..T........C.G..T | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.2 32 GTGTTCCCCGCGTGGGCGGGGATGAACCG # Left flank : CGTGCGGCAGTACCCGCAGTACGAGCGCATCGGCCTGCGCGAACTGTGCGACAGCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCGTGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACGATCGTGCAGTACCTGCAGTTCGCACGCGACTTCAACAAGCTGTTCCCGGGCTTCGAGACCGATATCCACGGGTTGGTCGAGGAGGAGATCGACGGTAAGGTGGGGTACTTCGTCGACTGCGTGCGGTAAGGCATTGCCGCGAGCTTTTGCCCGGCGGTAGATCGGTAGATTTTTGAGGGCCGATTTTTTACTTTTGGATCAAAGGCTTGCGGTAAGT # Right flank : TCAGCCAGCCCCAGTTCCTCGATCGTCTGCAGGAAGATGAAGAACGTTCACGGATTAACGATTTTGCTATCTCATTTGGATAGTTTTTATATTTGCTGAAGCTGTCAGGAAAATCCAAAATAAATGTCCACCGGGCTGTTGTGATCGCCCGTCCGGGCGCGAGCACAGATAGACATTTCCTGACATCAAGAAAAAGCATCAGGCTGATATGGAAAATGGGGCGGCGCGATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCAGTCAGCTTTATCACCTCCTTGTCTTTCATGCCTTGGATGTCGCTGCTTGCGGCGCGGAGTTGCTGCGCTTGCCCCGGTTTTCTCTTGCGCCCCTGGCCGCGGAACTCGGTTGGCCATTGCGGGTTGTCGAAAAGATATTCATCTGGTTTCTGGCGCTGCACGATCTTGGCAAATTTGCACGCGCTTTTCAAAATCTGGCGCCGGGGTTATCGCCCGATCTCGTCTCTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGGGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2455995-2455355 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDQJ01000001.1 Ralstonia solanacearum strain CFBP3858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2455994 29 100.0 32 ............................. ACGAGAAGTATGGCGCCAGCGTCATTCAGGTA 2455933 29 100.0 32 ............................. TCCCCGACCTGAAGCGGAAACGTAACGCAGTA 2455872 29 100.0 32 ............................. CCCCAGGATCGGCTTCGTTCCGAGACCGTCCA 2455811 29 100.0 32 ............................. TCTGGGTACTTCGCCATGACGCTGGTCGGGCC 2455750 29 100.0 32 ............................. GCTTGCGCGGATAGCTCTTGGTCGGCCGGATG 2455689 29 96.6 32 ....................A........ CGGGTCGTTACCGACACGTGGGATGCGATGAA 2455628 29 93.1 32 .............A...........G... CCTGGCGTCTTGAACAGCGACTGGATGACGGA 2455567 29 86.2 32 .........TT..A..A............ GCGGTGCTGCGCGACACGATTGTCGCCAACGC 2455506 29 89.7 32 T.........T..A............... TGTTGGTTTCTACGTAGAAACTTGATGGCGCA A [2455484] 2455444 29 89.7 32 .........A......TA........... GTGAAGCTGCGCGAGAACGGAGTACCGTTGAT 2455383 29 93.1 0 ........................CT... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.3 32 GTGTTCCCCGCGCCTGCGGGGATGAACCG # Left flank : CGTTTACACCCCTTCCCCCAACCTTTACCCCGTTTTTACCCCGCTTTCCCTAATGTTGCAGTGCACGCGGACCCCACGACGGGAGCCTGCGCGCGCGCCGCATCCGGCCCCCTCTGCGCTGCAAGTGCGCCGGGTCGGGCGGCACCGACAACAACAAGGGAAGGTCCATGCAAGCCAAGCAGTTTCCATCGCGCGCCACCGTCATCGGTGGCGTTGTGTTCTGCGCCGCCGTTTTGAATGGGGCGGTGGCCCACGCGCAATCCACCGACACCGTCCCCGCGCCGGCCGCCGCGCCCGCCAATGCGCTGACGGCCAACGTCACGCTGGCCAGCCAGTACCGCTATCGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGCCTGCGGGGATGAACCGTACCGCGCGTTGATGTCGGTGATGTTCGCGTT # Right flank : CCAGTGGCCATCCAGCCGATGTCACGACCCGGATGCCGCTACACACTAGTGCCAGCTTGACCGCGCCTGACAGCCGTCCCTGCACAGAGGCAAGGACACAGCACGTCCGGGCCGCTGGCGGCGACGCGACGTCGCCGCCGCAGGGCTGGGATCAGTCCGCCAGCCCCGCACGCGCAGCGGCAATCGCCAGCTTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGATGCCACCGAGCCCTCCAGCGTCAGCACGGCGTGCACGTCGTCGCTGATCAGGTCTGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //