Array 1 27960-28213 **** Predicted by CRISPRDetect 2.4 *** >NZ_RIZA01000001.1 Staphylococcus aureus strain A54_B NODE_4_length_183509_cov_80.414534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 27960 36 100.0 37 .................................... TTATTCTCTTTCTCAAACTGTTCCATTTCATAGCCGT 28033 36 100.0 35 .................................... TGTTGACTGATTTTGATGATTTTATTTTCTTTTCT 28104 36 100.0 37 .................................... CACTTGCTATTAATTTCTTGTTCATCTTAACTACTCC 28177 36 91.7 0 .................................TGT | A [28207] ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 97.9 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CCCAACTGTTACTAATAAAGTATCAAAAATTTCCAATGAATATTTATTATATTTTGGTATATTTATATAATCATTAGAAACAAATTTTAAATTATTCATCTCAATTAAGCAGCTAGTTTTAGATATATTTAAAGTTCTTAAGACTGATAATTTACTACTGTAAATATATTCACTAGATTTAAACGCGTATCCTGTTCTAATATCAGCTATATTTTTTAATGAATTAATATTCCAATTTAAAGGTATTTCACCTAACTCACTATCAATCATTTCTCCACCATTAGATTTATAAGGAAGAGAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATAAGTAAAATCATCATAATATTTGTCAAAAAAAGTGACATCTCATATAGTAGCGTGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATCTATCAAAGTATCT # Right flank : TAAATTTAATTACACTCTAAAATTCGTGAATTTTTAATGGAATACGCATGGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAACCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTACGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCTG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 36932-37181 **** Predicted by CRISPRDetect 2.4 *** >NZ_RIZA01000001.1 Staphylococcus aureus strain A54_B NODE_4_length_183509_cov_80.414534, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 36932 36 100.0 35 .................................... TATTTAATTCATTAAATTTATTAATAAGGTTTGCT 37003 36 97.2 35 ..................................G. GCTTTCATTTGGTTTAAGTTTGTCATAGGTTATCA 37074 36 100.0 36 .................................... TTAAAGATCTCAACAATAGCGTCCCATATTTTCTGT 37146 36 88.9 0 .........A.......G....C.........A... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 96.5 36 ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAGTTGAAAAGCACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCATTAACTTTTCTACAATTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAATTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCACTATTTTTGACAGCAAATTTTATATTTGAACTATTGATTTAATAGGCTTTAAAGAGCTATCT # Right flank : CCTCATCTTGATGATCCCAATTGGCTTGGTTAAAAAGAAATCGATAACCTTTCGTAGAATAGAGAATAAGTATTAAAAATATATTTGGTTTGATAAAATATTCTGCAAAAAAAGGGGAACAAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGCAATTAATTGACATTCAATTTCTAAATAAGCAGAGACAAAAATAACTTTCATACAAATAATTTCTTTGTGATTAAGTTGGAATTAGAAAACTAATACTAAACGAATGGAATGTATATTATTGAGGAATTGGATGCAGTGTGGTGCAATTTCGAGAACTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAGTCAAGATATAAAAACAAATATTTTTACCATAACTATATTAGTAAATACTTTATTATTTAGTATACGGATGAAAGCGAAGTGCCAGCTAGCAATGCTCCAGATATAGGTATTAGTATTATAAAAGAGCAAGATTACCATTTAGAAAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGAAGAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //