Array 1 60479-59474 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLNC01000013.1 Escherichia coli strain MOD1-EC5514 MOD1-EC5514_13_length_135865_cov_55.2117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60478 29 100.0 32 ............................. AAATATTAGGGTTTCGCGCTACGTTCGACACC 60417 29 100.0 32 ............................. GGCCGTATTAGCGGCCCGGTGTTATCGCTGGT 60356 29 100.0 32 ............................. GCGGGGATTTGTTGGCGAAACAGGTCGGCGTC 60295 29 100.0 32 ............................. AAATTATTTTTTGGGTGTTAAAAACCAGATTC 60234 29 100.0 32 ............................. ACGGAACGACCAGTGCGGATCACGCGTGCTGG 60173 29 100.0 32 ............................. CCTCGCGCACAGTTTCGCCAATTCCTCTACCC 60112 29 100.0 32 ............................. GGCTGGCAGCGTATCCTGGTGCGTGAATTAAC 60051 29 100.0 32 ............................. CCGAGTAAGTCGAGTTCACGGGCGCGGGATTC 59990 29 100.0 32 ............................. AATTTCCCGAGTTGGCCGCGGGCCTGCATTTG 59929 29 100.0 32 ............................. TGTTAATAAAAAAGGCCGGTTTCCCGGCCTGA 59868 29 100.0 32 ............................. AAGCAACAAATGCTGTATACGGCACATTTATA 59807 29 100.0 32 ............................. CCCTCGATCTCGATGCCTAATCGCACAGCGTC 59746 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 59685 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 59624 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 59563 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 59502 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.0 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGATTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 87870-86682 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLNC01000013.1 Escherichia coli strain MOD1-EC5514 MOD1-EC5514_13_length_135865_cov_55.2117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87869 29 100.0 32 ............................. TGATCGCCGGTCACGGAGCCGGGGCGCAAACC 87808 29 100.0 32 ............................. ATGCAACAGGTGCCAAAGCCCCCGACGGCACC 87747 29 100.0 32 ............................. CATGAGCCAGGACGACGCCCGGTCCGAGGGCG 87686 29 100.0 32 ............................. CGCAAAAACCATTTTTTCCCAGCTGGAGGTTA 87625 29 100.0 32 ............................. TCGCTGGCGGGGACCGATCATATCTGTCAATC 87564 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 87503 29 100.0 32 ............................. TAGACAGAGTAATAAATAACGCAGACAAAAAC 87442 29 100.0 32 ............................. AGTAGCCTGGAGGCGCTCGCGCGCCTCTTCAG 87381 29 100.0 32 ............................. TTTTGTGATTCAGTAATCGTTTGAGTATGTAC 87320 29 100.0 32 ............................. CGAATCCCAGCCTTGAAATTTTGGCTCATGGA 87259 29 100.0 32 ............................. CGCTGACGCGGTAAAAAGCGGGGCGTGATTCG 87198 29 100.0 32 ............................. AGTGCCAGCGCCGCGCACGCCTGATCATATGT 87137 29 100.0 32 ............................. GGGTTCTATTTCCTCGGGATTTGCCGACACGC 87076 29 100.0 32 ............................. GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT 87015 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 86954 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 86893 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 86832 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 86771 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 86710 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //