Array 1 55312-56800 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEU010000001.1 Pullulanibacillus pueri strain DSM 100927 Ga0454071_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 55312 36 100.0 36 .................................... GATGAACAACGAGTTGTAGGATATTCGACATGGGGA 55384 36 100.0 35 .................................... TTTCAGTCCGGTAGTTTCAAAGGATTGCGGAAGGA 55455 36 100.0 40 .................................... GCATCAACAAACAGGTATTTTAGTTTAACCTCCACTATTA 55531 36 100.0 36 .................................... CTACGACCTATATTCAGCGCACGGCTAGCTTCGTGG 55603 36 100.0 36 .................................... AACTACTTGCTAAACTTATGTTGAATAGTCTCTACG 55675 36 100.0 35 .................................... CAGCAGTTGGCGCCAATCATCGGTAAAGTCGTTTC 55746 36 100.0 36 .................................... TCAGTTCCCCTTCGCTTTCACAATTCCAATATACCA 55818 36 100.0 36 .................................... GATGAACAACGAGTTGTAGGATATTCGACATGGGGA 55890 36 100.0 36 .................................... TGTATGTTTTGTTCTCCATTGCTTTATTTTGATGAA 55962 36 100.0 40 .................................... TCTTTTATATCGGAAACATGAACACCTGCCCCATTGGGAT 56038 36 100.0 36 .................................... CAACGTGTTTATCGCCAATTTCTACCCCTTGCATAC 56110 36 100.0 35 .................................... CATCTCTTAAATTTTTGAAGGACAATCGGGGCTGA 56181 36 100.0 36 .................................... GGTCATATCGGAGTATGTTAGCGCACCATCAGTTTC 56253 36 100.0 36 .................................... GACGCAGAAATAGTCGATACCAAGATCGGCTATATG 56325 36 100.0 37 .................................... TCAATGAATTGAATGGTGGTGCTTCACAAGATACTCA 56398 36 100.0 35 .................................... ATAAGGATATAGCGAATACTGACGATAAGACCAAG 56469 36 100.0 38 .................................... AGAGCAGACGGAATACCTTATGCAACTGATTATTATCA 56543 36 100.0 42 .................................... ATGCAAAAATACGGCATCATCAAGGACGGGGAATTGCTCTTA 56621 36 100.0 35 .................................... AACACTATTCCAGTTAATCGTACCTCTATCGTTCT 56692 36 100.0 38 .................................... GCGACACGGAAATACGCGCGATTGCACGCAGTCTTAAC 56766 35 94.4 0 ...........................-.......T | ========== ====== ====== ====== ==================================== ========================================== ================== 21 36 99.7 37 GTCCAAACAAAGAGAAGAAGCAGTAATAAAGGGCAC # Left flank : AAAGCGGCACTTAATGAAATTGTACATCAAAATCAAGATCAAGTGATGTTTGTTCAATTTGGTCCGGTAACAAGTAATCAACTTCAAAAGAAAATTTCAACAGTAGGGAGAGATTATATGCCGATGGATTTAGAAAAATTAATTTTCTAATAAATTTTATAATTTAGACGCATAATCTTGACTATTAGTGGGCATCCTTTATAATAGAAGTAATAAAGCTACATCTTAATGTTGTAGCAATTGATTGTTTGTGCATCGAGTGTAGAAACACTCTAACAATCACTTTTATTACATTTTTCTTCTTTTTGTTTGGACATGCTGTCGAGCACCTCTATAGGTCAAAATGACCGGGAGGTGCTCGAAGTGTTTAAAATAACAACATCTTTTAATTGTGAGTGTGTTTTTTATGGTTATTTTTGTTGGTATTAATCATTTGAAAATAAGGATGCTCGAAATTAAATTTGAAAAAGCTTTAGTACCAAGCGGTTCGAGCGTCTGCA # Right flank : TTACTAAAACAACTTAAATATTTAAAGGAAACCACGTCAGGTATTAACGATAGATTGCTCGGCGATCATTAATGAATTAGAAGCCTTAGATAAAGACAGTATGGCTAGTTATTTACATGGTTTTAAAAAGGCTGAACTCGTTGCCATCGGTCAATCTATTCAAATTGAACTTAAAATGAGAGCCACTAAAAAAGAATTAATTGAAAACATCCTTCATCACTTTAACTATATCCGATTAAACGAACAAATCGCCAATCGGAATAAGTCAAAGAAAATATGAGAGGTTAATGGGTTGATGAAGGGGAGTCAGAAACTTCCGACTCCCATTAAAGAAACCATTACTCGAAAGGCTACTAGACTCACATAATCTTAAGCACATTATTCCTCTATATCGAATGCAAGTTCTTTTTCTGTGGAACAATATTTTGGGTGGTGACAGGTACTCTTCCTTTGGTAGAAAAAAAGAAATACCATGTATGGTGATAAAGTGCCTTTGCAGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAACAAAGAGAAGAAGCAGTAATAAAGGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 85824-85060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEU010000013.1 Pullulanibacillus pueri strain DSM 100927 Ga0454071_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 85823 32 100.0 35 ................................ TCCTTTTTTTGCTTAAAAAACTCGCTAAAATGATC 85756 32 100.0 34 ................................ CTCACATTCCGGAATGGAATGGAAAAAGTATATT 85690 32 100.0 35 ................................ TCTAGCATTCCGTTTATTGCGCCATGATCTATATG 85623 32 100.0 34 ................................ CTCTGAGGAAAAGGCTGGAGCGAAATCAGCATCA 85557 32 100.0 34 ................................ GTTTCAATATTGCCGCTCGCGATGTGGCGAACTA 85491 32 100.0 35 ................................ CTTTATCTCTTGCGAGAATCATATAATTCCCGTCC 85424 32 100.0 34 ................................ TTCAAGCAACGCAACCGTTACGGATAACGGAACT 85358 32 100.0 33 ................................ ATAACACTAGGATTTAGTTCGACTCTTCTAGAC 85293 32 100.0 34 ................................ CTCGATTACTACGGTCGGCGACATGTTTTGGTAA 85227 32 100.0 35 ................................ GTTTTAAACTCGAATAGTAGCTGTGTTCCATCGGT 85160 32 100.0 36 ................................ GGGGTGGGGAAGACACATCTTGAAATTGCTGCAGGT 85092 32 93.8 0 .....................C.........C | G [85063] ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.5 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GATTTAGATGGGTATCCACCATTCTTATGGAAGTAGAGTGATTAGATGCTAGTTGTGATCACATATGATGTGAGTACCGTTGATGGCGCTGGCAAAAAGAGACTGCGAAGAGTATCAAAGCTTTGTCAAAACTATGGACAACGTGTTCAGAATTCTGTATTCGAATGTGTAGTAGATTCTACCCAACTCAAGCAGCTTAAGTATGAGTTGTTGGAAGTCATCAATAGTGAAAAAGATAGCTTGCGATTTTATCGATTAGGTGATAATTATAAAACCAAGGTAGAACATATCGGTGTAAAAGATTCCTTCGACGTAGAAGGGCCTTTATTTATCTAGTTAAGGTGCGAATGTGAAGCGCACATCAATTACTAAGGAGATTCGCACCAAAAAAGACGGTAATAATATACTTTTATTTGGAAGAATGGAATTAAACAGGTTTATTTAATGGTCTATTATGTTATAAATGTAAAAATATAGGGCAAATATTACCTGTTTCCGCT # Right flank : ACGGGCAGCAAATCTGAAACTAAGCTTAAAGAAAAAAACTTCCTGTAGCGAAAACAGAAAGTTTTTGATGTCTTTCCATTACTTATCAAGCAGGTTATAGAGAAACTCCCATTTCTCAGTATCAAGCAAGTCCTTTTGAGAAATCTCGAGTCCGCCGCCTAGGAAGACCTTTTGATCTTGGATGGCGATGACCATAGCCTCAAAGGAAGAGGTAGGATCAACCTTCTTGTATACGTCACCTATGGTGGGCAAGAAGCCACTATTCACTCCGTTTTCTTCTAACTGAAGGGCATCGTCATTGATGTCACCTTCGCTTATTTCTTTATAATCAATGGGATGGCTATTTTCATCTCTACCTGGGACCATTAATAAATATTCGCTATGTTTTATGCCGTTAGATCGATTGGTAATAACCCCTTTGTTTTCTACTGTTTCAACGACTTCGATGGAGTTTAATGTATAATTATCTAGATAATCCGGACTTGGATTGGTAATTAAAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 94867-94567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBEU010000013.1 Pullulanibacillus pueri strain DSM 100927 Ga0454071_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 94866 32 100.0 34 ................................ CTGTTTAAAGAAGTCAATGTGATGCCAGCTACAG 94800 32 100.0 36 ................................ GACAATTTACCTGGATTATTATCCATGCGACGACCG 94732 32 100.0 34 ................................ TCCCAGCACCTTGGACCATAACCGCGTTCAACGC 94666 32 100.0 36 ................................ CATCACAGATACACTAAAACGAGAATGCCCTTGATT 94598 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCACTCTTCATGAGTGCGTGGATTGAAAT # Left flank : ACGATTAAGTTTTTGCTGAATATTCGCAAAGGTGTTGACAGGGAATTCATTACCGCAGAGAATAGGATTATGGTCTTATTTTGGAAATTTTATTATATTCCTTATAACGTTTAATTTGTTTATTTTGTAAAAGGGTATTTTCATGAGGCGGGCATGAACTATAGTGCACAGATACGTGAAAGTGATCAACGAATGTAAACGATGAACTCCTCGACATTAAAGGATGAGAAAGATAGTCTGAGATTCCATCGATTCGGGAATAACAACAAAAACAAAATTGAATATATCGGTGTGAAAGAATTTATTGATATTGTGGGGCCGTGCCTTTTAAGTGCGAATGTAAAGTGAACATGTTTTGCTAGGGGGATTCGCACTAAATTCTCATTCATTTTATAACATATATTCCTATTTTTGTTATTCTTTTCTTTGGATAACACAGGGAATGGCCGATTTTCTAAAGAAAAATCCCATTTTTTATGAGATGTTAGCCGAAAATCGCT # Right flank : TCCGGGATATTGATCTTTGGCCCGCTTTGAGTTGATCAAAACAAATAATTTATTGTTCAATTTGGAACGATCCTACTATTCTCGATAATTTTAAATTGAATGCGTTTACAAAAAGAGGTATAATAGTTTTATAGGATTTTACTTTTATAAAGTGATTTTCTATAAACAAGTACATAAGTAAAAACCTGTCCCAATAAAATATAGACAGGCTTTTGAACTTACCAATATAATAATAAATTTTTCAATCCGCGCCTTTAATAAAAGCGACAACTAACAAGCTAATTATAACATGAGTTTTTGGTTTTTTTAATTTTATAATTTTTACTTCATTTAATATTAAATTTGAATTGAGACTTATATTTTGAAAAAGATTGTAAAGATCAAGGAGCGTGAGGAAATCAAGAGGGAATGTCTTGAAATAAACTATAGTGGTCATCAAAAGCTCTCTATCCGACAAACACGGGTCAGTAGCTTATATGTATCAGAGTCAACGTTTTTGA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //