Array 1 53183-53811 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMRA01000016.1 Mycolicibacterium hassiacum DSM 44199 mhas.contig.15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 53183 36 100.0 37 .................................... TCGTCGCTGAAGGGCATGTGATCGATGCCACCGAAGC 53256 36 100.0 38 .................................... GAGAACGTCGCCAACCCGGCCAGCCAGCACCGGTACGA 53330 36 100.0 37 .................................... CCATCGCTCGGCTGATCTCGTGCGGTTCCAGCATTCG 53403 36 100.0 42 .................................... CAGGATTGACCAGACCCAACTCGATGCCGAACGTCAAATCTC 53481 36 100.0 39 .................................... GAAGGTCTCGACGGCGCGTTGTGCGGAGCGGCGGGACTT 53556 36 100.0 37 .................................... GCAACGGAGTCGTGCCACAGCAGGCGATCGCGGCGCT 53629 36 100.0 38 .................................... CTCGTAGGCCGCGCGCTGGGCCTGCTCGTGGGAGTCGA 53703 36 100.0 37 .................................... ACGCGAAGCACATCAATGAGGCGTGCGATGTCACGCC 53776 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 100.0 38 GCTGCAATGCGGCTCCGTCTCAGGGACGGAGATCAC # Left flank : CGCCAGCGCGTGGCGGCGACGTCTTGCTCCTCGAATCGGCGGCCGAGGTTGCGCCGGGTTCGGTCAGGCGGAGATCGGAATCGCCGCCCTGGTACCGGCGCGGGGGTCTCTGCGTCCGACCGCGCCGACGGTGGTGCTGCTGCTGGTGGTGGCCCTGGCACGTCGCCAGCCAGACGGGGTTGTCGGCGCGCATCCCTGCCGGCCCGTCGGTGAGCTTCGCGGCTACTCTTTCGGTGCTCCGGTTCTGCAGCCCGGCGACGCGCTGCGGGTGTCCGGCAGCGCGTGCCGTTCGGGTTCCTGCTCGAGGCGTTGTTCGGGATCGGGTGCGGCTTGATCGAATTCGGCAAAGCGCTCAGGTTCAGCCGCGGCCTATGCGCAATGTGATCCTGCCGAGTGCTGCCGCAGTTCCTGGTCTGCATATAGCAGGGCCCGGGCGTTTCGCCGCCTTAAGAACGGGGATTGCTCGTCGGTGGCATTGTGGGCACCGCGGGCGCTGGAAC # Right flank : ATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAATGCGGCTCCGTCTCAGGGACGGAGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.10,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 40-735 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMRA01000017.1 Mycolicibacterium hassiacum DSM 44199 mhas.contig.16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 40 36 100.0 40 .................................... CTGGCGAGCACATCGTCCAGTTCGGCGAGTTCCAGATCGG 116 36 100.0 40 .................................... GCCGGTACTCATCGCGCTTGTCCGGCGGGGTCTCGTCGAT 192 36 97.2 37 .................C.................. CGAGTGAACCGCACGTGATCGGGTTGGAGGGATGACA 265 36 100.0 35 .................................... TCGTTCGGCCAACCCAGGTCTCCGTTGGCGTAGGT 336 36 100.0 36 .................................... AAAGCCGCTTCTGCCGCAAGCGGTGGTGGTGTTAAC 408 36 100.0 37 .................................... CAACGAGCATTATGGCGGCAAGCGCGGCAGGTTTCGG 481 36 100.0 36 .................................... CTCGGTGACGGCAACCGCGACAACAACGGCCGTATC 553 36 100.0 36 .................................... TGGCAGCCGGCGCCGACAGATCGCTGTAGTAGAAAA 625 36 100.0 39 .................................... GGGAGGTGCCCGATGACCGCGCGCGACGTGATCGATTGG 700 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 99.7 37 GCTGCAATGCGGCTCCGTCTCAGGGACGGAGATCAC # Left flank : TCACCTGACGCAGCCGCCGCGCCTCATCAGGGTCCATCCG # Right flank : CAGCTGCGGAAGTTTACCACACTTCACCTGCATCGATCGGCGTGTCCGCGAGAGGTGGTTCATGATGCGGTCGGTGGCCACACAATCTTCTTCACTATGGAGTTGGAAAGGTGCTCTGAGCTGCGTGCGAGTGGTTCCCGGGGCTTGCGCACCGCAAGGAGCGTTCGCTAAAGGATGATCGGACCACTGGGAGGCAATTGGCGGGGGACACCAATGGTGGCGACTGCCGGCGCAGCGTCGCACCGGCCGAGGTCGACGTGGATGACCGAGTCTGCTCGGAGATCCACCGCTTTGTGGATCTCAGACCGCCACCGAATCAGTTCCAGCTCGGACAGATCGCACAAAAAGACCGAGTACTGCAACCGAACTCCGTAGTCTTTCATGATCGTACAAACGCGCCGGAGTCGTTTCGGATTTCGGATGTCGTAAGCTATGAGATAGCGCCGTCGTGCCATAGATCACCGGGTTGTCATCGGGCTATATTGCTCAATCTCACCCAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCAATGCGGCTCCGTCTCAGGGACGGAGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.10,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 183-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMRA01000029.1 Mycolicibacterium hassiacum DSM 44199 mhas.contig.28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================= ================== 182 33 100.0 45 ................................. CACCCGGTTGCCGCAGGTGATCCGGCAACTCGGCGACCAGCGACG 104 33 100.0 38 ................................. CACCGCGGAAGCCGCCCGCTACGAGCAGACCCTCTCCG 33 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ============================================= ================== 3 33 100.0 42 GGCCTCAATGAAGAGCGGCTCCCGAAGGAACCG # Left flank : GAGGATGTCGGCGATCTGCTCGCGATCGCGCAGCACCCGTTCGGCGCGGCGGGCGCCCAGCGGGAACTCGCTGAGCACCTCATGCGGGCTGGGGATGGCGGCGAACTTGCGGACACGCCGATCCGAGGTAACCGGTGCTGCGACGGTCTGCGGTGGGTTCATCTGTTGCAGGTGCCTTTCTTCCGGTGGGGCACCTGGCTCGGCCCGGTGCCCTTTTCACAACGAAAGGCAGCGACCGGGGGTCACTGCCTTGGGCTCCGGGTGGGTGCGCGTCAGCGTGGCGCTCGGTCGGCTCCACCCGGAGCCCACATAAAGCGCCAAAAATAGGTACGAACACCCATCGTCACGACGAACAGGCTAGCCGGTGGACCGGTCGACCGCCAAACCGAGGTGACCGATTGTCCGCGGATCGCGGCCGGCCCGGCGGTTCAGCGCGTCCGGACTGGAGCGAAGGAACCGCAACCTCAAGCCATCGGTCATCGCGCGTCGATCATCGTCGC # Right flank : G # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCTCAATGAAGAGCGGCTCCCGAAGGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 42925-43183 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMRA01000028.1 Mycolicibacterium hassiacum DSM 44199 mhas.contig.27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 42925 36 100.0 38 .................................... GAGAAGGACTCGGCCGGAACATGGTTCGGTACCCCCGG 42999 36 100.0 40 .................................... CCCGTCGGGGCTGCCGTCGGCGTTCAGCCCGTAGTAGGGC 43075 36 100.0 37 .................................... ATCGTGACGATGAACGGCACCACGATCATCAACTACA 43148 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 4 36 100.0 39 GGTGCGGTTCCTTCGGGAGCCGCTCTTCATTGAGGC # Left flank : TGGTATCACTACGAGATGACCCGAAAAGACGCGCGGCGATTCCTTATCGCATACGACGTTCCGAGTGACCAGCGGCGATCGAGACTCTCAAACAAGCTGCAGGCCTACGGTGATCGAGTCCAGTACAGCGTGTTCGTCGTTGATGCCAGCCCAGCGAAGCTGCGGCGACTTCGCCACGAGTTGAGTCAGATCATCGAAGCGAGCGAAGACTCGGTACTTCTTTGCGATCTGGGCCTGGTTTCCGCCATACAAGAGGACCGCTTCGTCTGTATCGGGCGCACTCGACCAATCACGGACCAGTCGGTGATCGTTATCTGACATGTGCGAGGGCTGCCTCGCTGCAGAAATCCCCGCCAGCGGTCGCGTCAAGAAATCGCAGGTCAGATAGTCTCCTCGGCCGCATAGCTCGTTCGGAAACCACAAAGGTGCTCTCCGAAGTGGCGAGCCCTCGCGCCGAGGGGACAAAACCGCAGGCCAGGCATGGTATTTTTGGCTCGCAG # Right flank : GTATGCAGCCGGTATCAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCGGTTCCTTCGGGAGCCGCTCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 4-154 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMRA01000040.1 Mycolicibacterium hassiacum DSM 44199 mhas.contig.39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ............................. TTCAATGGCGGCGGCAGTGCGCAGGCGTATGT 65 29 96.6 32 ............................C GTGCTGTGCCAAGTCGTGAAACCCGGGCCGTG 126 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGCTCCCCGCGCAGGCGGGGGTGATCCG # Left flank : CCCG # Right flank : ATCCCTGGTTTCAGCGCTCAACGGGCTCTCCCGCTGGCGAAAATGGTCACCCGCAGCTTGCGTTCCTCCCGTCCAGTTGGCCTGCCGCGCCTTGTGCTCCGTGCCGACGCGCTGCACGATATAGTCGCCCTTATCGAAAACGCAACGGGATGTGTTTCAGGAAGTGGCCGATGACTGTCGCGGGATCAGATCAGGATGCCGGGGTGGAGTTCGATCCGTTCTCCGCCGAGTTCTACGACGATCCGCACGCCATCTATCCCCGACTGCGCCGGGCGGCTCCGGTCTACTACAGCCGCAGACACGACTTCTACGCGCTGAGCCGGCACGCCGATGTCGCTGCGGCGTACAAGGACTGGGAGACCTTCTCGTCGGCCTACGGTGAGGACCTGGGCATGGTGCGCCGGGGTGAGAATCCGCCGGCGAAGATGATCATCTCCATCGATCCGCCCGAGCACCGGGTGATGCGCAGCCTGGTCAACAGGGTCTTCACCCCGCGGGCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //