Array 1 692302-691676 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR215023.1 Mycoplasma iowae strain NCTC10185 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 692301 36 100.0 30 .................................... GAAACAAATATAAATATTGAAAATACAATT 692235 36 100.0 30 .................................... CCAAACATTGTGTTGTGCTTGGGTCTTGTG 692169 36 100.0 30 .................................... ATATTGTAATTACTACATTATTAAGTTAAT 692103 36 100.0 31 .................................... ATCGATATGTTTTAAGCTTCATTTAATGTAG 692036 36 100.0 30 .................................... TGTTTAATAGTCATTTTAAAAACCTCTTTA 691970 36 100.0 30 .................................... AGCATGTGGAAATGTATCATATGATTTAGT 691904 36 100.0 30 .................................... TATTCCAAGTCATAAATAAGATTATCTATA 691838 36 100.0 30 .................................... TTTCACAAGAAAACGGAACTTGCTATAAGA 691772 36 97.2 25 .................................T.. TTTTTTAAGTATATATACATAGTAT 691711 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 99.7 30 GTTTTGTTTTGATACCATATCCATGTGAACTAAAAC # Left flank : CATCTAAATACTTGCCTAGCACTTGGAACTTTAACTAACGGATAGTTTTCTTTTATTCAAAAAATTGTAGCTTCTACACCATGAGATTTAGGATTAAATTTTTGAATAAAAAGATCTGTGAAGTTTTTGTACTTCAACATAAAAAACATATGACAATTTGATTTTCTTCTAATGTATTTTTTGTGAGCAGTTGATGAATAATAAATCTCTGTTGAAGATGTGTTTCTTTTTAATTCTCTTGATATTGTTGATTTGTTTTTATTTAAGATTTTTGCAATCTTATTCATAGAATATTTTTCTTTATTTCAAAGAAAATAAATTAAGCATCTTTCTTCTTTTGTTAAATGTTTATAAGTTTTCATAAGCACTCCTAATATTCATTATCTTTTTATTAGTGAACACTTACAAACAAAACAAATGAAGTGCACACTCTTTTTTGAGTGTTGCACTTCACATGTCAATCGAGCAACGAAACAAATATAAATATTGATAATACAATT # Right flank : ATGCATCTAAAAAGTCATCATATTTAAAGTCTAGTTCTACTAATTGTTTTTTTGTTTTATCTGTATTGTTTGGTTCTAGACTTCTAACAACATTTATAATTTTTCTTCTTGTTTTTCTTTTAATATTTTTTAGTTATTAAAGAATTTTCATTTAGTATTTTGTTAATAGATGAAAAACTTATATCAAAGTTATCTTTGATATATTGGTTGTAAAACAATTTGTGAGACATTCTATAGTTTGTGTTATCTCTAGATGAATTAATTTTTCTTGAATGTTAATATATAGATCTACAATATTTTTTTATGTTTTTACAAATGGTTTTTTACTTACATTTTTTTATTTTAGTGTTGATAGATGAAATTTTTCTCTCCATAACTTTATATATGTCTATTACATTATTTTACTGATTTGTTACAAATTAACGAAAGTCTTTTAGCTGATAATTTCTTATTTTTTATAAGCTCTTCTATCTTTCCAAATATTCATAATTTAAAATTTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTTTGATACCATATCCATGTGAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 693535-697996 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR215023.1 Mycoplasma iowae strain NCTC10185 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 693535 36 100.0 30 .................................... AACTGAACTGATATATTGTTGATATTGAGA 693601 36 100.0 30 .................................... GTTAATACATAAAACAGAAAGTAAAAAAGA 693667 36 100.0 30 .................................... TAACGGGAGTGAATTATTATAAATTCTTTA 693733 36 100.0 30 .................................... TGAAATTGATAAACTCATACCAATGATATT 693799 36 100.0 30 .................................... TATTACATAAATCATATAGAATATTCACCA 693865 36 100.0 30 .................................... GGTACATTTATTAACATGGAAACTCCAGTG 693931 36 100.0 30 .................................... TTCAATTTGTTCAGATGAGCATAATAATGA 693997 36 100.0 30 .................................... GATAAAAAATTACTTGCCAGCACATTTATT 694063 36 100.0 30 .................................... TCTGTTAATGATTATGAACAGAAAGACTCT 694129 36 100.0 30 .................................... AACTTAACAACTATATAATAACTTAACAAT 694195 36 100.0 30 .................................... ATAATGACGATTTAGATTTTTGCGAATTAA 694261 36 100.0 30 .................................... TAAAAATCAAAGTAGTAGAGATAAATACAA 694327 36 100.0 30 .................................... TCTAACATAAATCATTTCTTTAAACTCATC 694393 36 100.0 30 .................................... CTTAGCACGTGTGAATGTACCACAAGCAAA 694459 36 100.0 30 .................................... CAATGTTATAACAAAATTAATTTTTTTACT 694525 36 100.0 30 .................................... AATTAATAGGGTAATGCTTATGTATTTTGA 694591 36 100.0 30 .................................... TTGAATAGTTCATATGGTAAACATGCAACA 694657 36 100.0 30 .................................... ATAAGAAAGTTAGTCAAAGAGGAGGAATTA 694723 36 100.0 30 .................................... TTGTGAAATGACACCAGGCAAGATTATCGA 694789 36 100.0 30 .................................... AATAACTTAATAATGTAGCAATTACAACAT 694855 36 100.0 30 .................................... AAACATTAAAACAATAAACAAAATTAAAAG 694921 36 100.0 30 .................................... CAATGTAGTAATTACACACTCAACAATTAG 694987 36 100.0 30 .................................... TAGGGGCGTAAAATAAAATGTTATATATGA 695053 36 100.0 30 .................................... AGTATTTACAAGACGCTATAAAAGAAATAG 695119 36 100.0 30 .................................... ATTATTAGGTTTGTTATGATTAGGTTTATT 695185 36 100.0 30 .................................... TAATGGCTTTAAATTTTTCAAAATTTGGGG 695251 36 100.0 30 .................................... TTATACTGTAGCAGGTTAAAGCTTGCTATT 695317 36 100.0 30 .................................... TAAACTTATCGCGATAAGATGCACTTTTTT 695383 36 100.0 30 .................................... CAAAATGCATTTTTTCACTTTTTCAAAAAA 695449 36 100.0 30 .................................... ACACTTATTTTTTTTTGTTTTTTTTCTAAA 695515 36 100.0 30 .................................... CAATGAAGTAGAAAGAAAGATAAAGAAAAT 695581 36 100.0 30 .................................... TGGTGTATCTGTTTCTGCTTATGATGTTTC 695647 36 100.0 30 .................................... TGTTACCGCTACAAATACAAGTGAAGAACC 695713 36 100.0 30 .................................... TTTATACAACAAGAAAAGAGATAACAAGAA 695779 36 100.0 30 .................................... AATATCATTTTTATTTACCTCTTAAATTGT 695845 36 100.0 30 .................................... TTAAAAGCTTTATAGTACAATAAATATTTA 695911 36 100.0 30 .................................... GTGTACGCACGGTTACGTTCTATCAAAGTA 695977 36 100.0 30 .................................... TTTGCTGACTTTGAAACTGTAACTACTGAA 696043 36 100.0 30 .................................... TTGGTAGATCACACAAGAAAAATAACTTAT 696109 36 100.0 30 .................................... TTCATATTGAATGTATAGTCAGTAATTTCC 696175 36 100.0 30 .................................... TCAGAGAGGAAAAAACCAAATTTGGTGAAA 696241 36 100.0 30 .................................... TGCTCCTTGATCTAAATCTTGCATGCAAAA 696307 36 100.0 30 .................................... TTAATTCATTCTATAATTCTATTTTTCATC 696373 36 100.0 31 .................................... TTAACTTTGTTATTACGTTGTTATAGTAAAA 696440 36 100.0 30 .................................... AGGGGGAAAAACTGTCGCAAACTTTGGTGT 696506 36 100.0 30 .................................... AAATATGAATAATGAAATAATGAATTTATC 696572 36 100.0 32 .................................... AATTATTGTTAAAGGTTTCAATGCTTTGAAGT 696640 36 94.4 30 T..A................................ AACACGTTTATAAATAGCATTTTAAAGCAT 696706 36 100.0 30 .................................... ATATGAAAACAATTAATTTATCTGATTTTA 696772 36 100.0 30 .................................... TATATGTGTTAGATATTGCTTTTTGACCAG 696838 36 100.0 30 .................................... AATGAAAGGATTTAGGTAACATTACACCAT 696904 36 100.0 30 .................................... TAAAATGGCCTTTTTTACTTTTTCAAAAAA 696970 36 100.0 30 .................................... TGTAACACTTTTTTTAATATAATAAAAAAT 697036 36 100.0 30 .................................... TAAAGTCTCTATTAAGTATTTAGTTATTAA 697102 36 100.0 30 .................................... TACACTTAATTATGATAAAAAAAATACTAT 697168 36 100.0 30 .................................... TCTTTTCCCTTGAACACTATCTTAAACATT 697234 36 100.0 30 .................................... ATGAAATCACCTTTCACAATCAATTGATTT 697300 36 100.0 30 .................................... ATGGCGTTGAGAGAGTTAAAATCATTTAAA 697366 36 100.0 30 .................................... AATAATATGAATAATACACATAATATAATT 697432 36 100.0 31 .................................... TCTCTATTGTTGATGTTTGGATATAATTTAT 697499 36 100.0 30 .................................... GGAGTATTGAGAAATGGAAATCGAAAGTGC 697565 36 100.0 30 .................................... TGTCACTATCAGTAATATATGCTTTGTATT 697631 36 100.0 30 .................................... AACTATCTTGCATCTGTTCAAAGTCAACAA 697697 36 100.0 30 .................................... GGTCGTTGTTATCTATTATAAAAAATCTGC 697763 36 100.0 30 .................................... ATGCGCGCGCATTATGCGCGTACGCGTATT 697829 36 100.0 30 .................................... TGAGGATGAGGATGAAAAACCTAAGAAATC 697895 36 100.0 30 .................................... AATAACAATCATAGTAATTAATTACTACAT 697961 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 68 36 99.9 30 GTTTTAGTTCACATGGATATGGTATCAAAACAAAAC # Left flank : GAAAAACAAGGTTGGCAATTATTAGAAAAATAAAAGGGAAGAACGCTAGATCAATGATGGCTAAAATGTATACCATTATTCGAGATGAAAAACTCCCAATAAAAAGCATCACTGTTGATAATGGGTTAGAGTTTCAAATGATGGGAATAACTGCAAAACAATTCAACTTTAAAGTTTATTATTGCCAACCTTATTCTTCATTCCAAAGAGGGTCCAACGAGAACATAAATGGGATAGTTAGAAGATGATATAAAAAAGGAACTGACTTCAGTTTAGTAAGTGAAGATAAAATAAAAACTCTTGAATGAAAAGTAAACAACATCCCAAGAAAAATGTTTGGTTATAAAACAGCTTACCAAATGTATCAAGAAAATATTTAAAACAAAAAAACTCTCAACTTATATTTCAAAGTCGAGAGTTTAATGTAACATTGAAGTGTTGCACTTCACATGTCAGTTAGGGAACAAAACAATTGTATTATCAATATTTATATTTGTTTC # Right flank : CCTCAAAATCAACTATTATCTAATATATTTTATTAAGTAATTTATATAAAAATTGGATACACTTTCTTCATTTTTAAGATAATTTTCAATAACTTTATTGTTTATTAATGTATTCATTTTTAATTCAAGATAACTAATAAGTTTATTATAGTCATATATCTCAACTAAAAAATCATTACAAATTACACATGATTCAATTTGAGTTATGTTAACAATATTTTTTCTTAAATCATTTGTAACAAAAATAAAATTGTGACTATTAATGTATTCTGAAATATCATTAATATTAAGTCAATCAATGTCACAAAAAACAAACGTCATTCTTTCATCAAATAAATTATTTTTTATCAAAGAAATAAAAATATTTTTATTAATATTGATCAAATCATTTATTTCAAACAAATTTGAAATAATTTTTTGCATTTCATTTTTTTCTTCGATAACATCAAAACCTATTTTGCTATTTATATATTCTTTTATGTTGTGTATTTTATCATTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTCACATGGATATGGTATCAAAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //