Array 1 1-1643 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDT01000092.1 Acinetobacter baumannii strain ABBL039 contig-51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 61 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 121 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 181 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 241 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 301 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 361 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 421 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 481 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 541 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 601 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 661 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 721 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 781 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 841 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 901 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 961 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 1021 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 1081 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1141 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1201 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1261 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1321 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1381 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1441 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1496 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1556 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1617 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 991-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDT01000115.1 Acinetobacter baumannii strain ABBL039 contig-76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 990 28 100.0 32 ............................ TAAAAAGCTAGGTTATGTCGTTTTTGGGATCC 930 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 870 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 810 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 750 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 690 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 630 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 570 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 510 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 450 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 390 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 330 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 270 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 210 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 150 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 90 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6081-10671 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLDT01000115.1 Acinetobacter baumannii strain ABBL039 contig-76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6081 29 86.2 31 ....G.......CC..............A TTTAAAACTACGTTTTTTGCCCCGTCATAAA 6141 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 6201 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 6261 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 6321 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 6381 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 6441 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 6501 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 6561 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 6621 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 6681 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 6741 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 6801 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 6861 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 6921 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 6981 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 7041 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 7101 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 7163 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 7223 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 7283 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 7343 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 7403 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 7463 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 7523 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 7583 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 7643 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 7703 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 7763 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 7823 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 7883 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 7943 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 8003 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 8063 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 8123 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 8183 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 8243 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 8303 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 8363 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 8423 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 8483 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 8543 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 8603 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 8663 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 8723 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 8783 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 8843 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 8903 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 8963 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 9023 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 9083 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 9143 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 9203 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 9263 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 9323 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 9383 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 9443 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 9503 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 9563 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 9623 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 9683 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 9743 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 9803 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 9863 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 9923 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 9983 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 10043 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 10103 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 10163 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 10223 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 10283 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 10343 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 10403 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 10463 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 10523 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 10583 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 10643 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 77 29 93.1 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //