Array 1 10925-10535 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMV01000202.1 Micromonospora rifamycinica strain AM105 contig202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================================ ================== 10924 28 100.0 33 ............................ CGGGCGGAACGCGGTCAACTCGGCGGCCGGCAC 10863 28 100.0 33 ............................ GCATGTCCGGGTCTGGCCGGACAACCTCCACGG 10802 28 100.0 208 ............................ CTCGGACTTCTCGGCCGACCGGGAGAGGTTCTTTCTTCCCGTCGTGCGCGGGGGCGTGGTGTCGATGACCATCCGACCCCGGGTAGCCGTCGTGGGGGAGTCCTCGTTGACCCCCCACCCGAGAGGTCGTGAGCTTCCTTCGGCCCGCCCCGCCGGGAGCGACCCCGTTGATCATCGACGGCCGTCAGCCCGCGCCTCTGACGGCCGC 10566 28 82.1 0 ....A....C....G......T.....A | TTT,A [10554,10560] ========== ====== ====== ====== ============================ ================================================================================================================================================================================================================ ================== 4 28 95.5 92 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : CCTGCAAAGCCATCGAAGCTGCCCTAG # Right flank : CCCCCGTTGACCTGGCCGGATGTGCCGGGAACTGGACACCGGGGCCACCACGCCCGGACCGGGCAGCTTTTTCCGGCCGGGTTCGCGTACCGTTGCCGCTCATGGGTGTGTCGCAACGGTTGAAGAGCAGGTTCCGCCGGTTCCTCCAGCGCCCGGGGACGACGGTCGACCTCGCTCCGCTGGAGAAGCTGCTGCCGCGGGTCGCCGCGCGCGAGGACGAGCTGTCGGCGCTGGACGACGCCGCGTTGACCGAGGCCGCCGGTGCGGCCACGGAGTACGTGGAGATCTGCGCCGTCGGCCGGGAGGCCGCCCGTCGTGGCCTCGACCAGCGGCCGTACGACGTGCAGCTGCTCGGTGCGATGGCGCTGCTGTCCGGCAAGGTCGCCGAGATGGCCACCGGTGAGGGCAAGACGCTGACCGCCACCGTCGCCGCCTACGGGCACGTCCGGCTGGGCAACGGCCCGGTGCACGTGCTCACGGTCAACGACTACCTGGCCCGC # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 458-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMV01000220.1 Micromonospora rifamycinica strain AM105 contig220, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 457 28 100.0 34 ............................ CTGCGAGGTTCGGCCCTACATTGCATGCCTTTCT 395 28 100.0 33 ............................ CACCTGGCCGACGAGGACGCGCTCGTGCGGGGC 334 28 100.0 33 ............................ CGACCTCGGTAACGGCCTCTGAGCAGGGCGGTA 273 28 100.0 33 ............................ GGCGGGCCTGGGGACGTCCCAGATCCTCGGCGG 212 28 100.0 33 ............................ GTCGCACTGACCCTGCGTGCAGCCCCAACCGTC 151 28 96.4 33 ...........A................ CGATGGGCATTCGGTGCTGCTCGACGACGCGGA 90 28 100.0 33 ............................ GGTGTTGTCCGCGCCGGCCGCCGACAGGTTGAT 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 99.5 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : TGCCGAGATGCCGAACGTGCAACTGCACGTCGTCCCGGCCGACGCCGCGAGCTACCCGGGGCTCGACGGGCCGTTCGTCATCGCCGACCTGCCGGAGGGGGCGCGGGTGGCCCACGTGGACGGTCCGGCCCCGGCGCAGATCCTGGACAAGCCGTCCGAGCTTGTTAACCTTGAACGGCGCTGGGAACGCATCCGTGGCGAGGCGCTCCCTCGTGGACGGACCCTCGATCTCCTGAGAGAAGCGGCTGCATCATGGACCTGACCGGGGCGCGGTGGCACAAGAGCACGAAGAGCGGCGGCAACGGTGGAAACTGTGTAGAGGTCGCGGGGAACCTGCCCGGTGTTGTCCTGGTGCGGGACACCAAGGACCGTGACGGTGGGGTGCTCGTGTTCACTCCGGCGGCCTGGCAGGGCTTCGTCGAATTCGCACGCGAAGCGGCGTGCGCCGACAAGTGAAGTAAATCCAGCTAGTTGATCTACAGCGCCCCAGCTCAGAAAGC # Right flank : CC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 204-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRMV01000358.1 Micromonospora rifamycinica strain AM105 contig358, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 203 38 100.0 36 ...................................... GCGATCGTTCGCCAGGTCGACGGGTATACGTAGAGC 129 38 100.0 37 ...................................... GCATTGAGGCACAGTGCGATGTGCGGGTAGTTGCCGG 54 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ===================================== ================== 3 38 100.0 37 GCTGCGCCCGGTCTGCGGACCGGGCGAGGATCGCAACC # Left flank : CGGGCAGCCAGGTGTCAGCGGCGGAGATGCCGAGCCGGTTGAACAGGAGCAGAAGGTGGTGGGTCAATACCTCACGTAGGCTGCGGGTCAGCGCGCCATGCCGGTCGAGCAATCCAAGATCCTCGCCCGCCTGATCGTGGTTTTTCGGCCATTGCGGGGTGACGGCCAGTGGACTTGCGGTCGTGCCGTCGGCTGCGGTGATCAGGCGCTGCATCGCCGCGATGAGCCTGGGGCTTGGCGCGGGGGCGTTCGGCTGGTGCCGGCGCCAGGCAAGAAGCCGCCAGACATCGCCCTGCTGTCCGACGCCTCAGGTTCATCAACTCCACTCGCGGCGTCAGCACTGACATACTGAAGGTGAACCAGTAAATGATCTAGGAACCCTCGGTGGTCACGGAAAGGCTGGAGGTTCCGAACCGCGAAATGGCAATGATTGGGATATACCGGTTCCACATCGCTTGCGCGGCTCTCTGACGAGAGTCGATTTCTGCTGTTGGGGAGCC # Right flank : CACCTGACCCTGCTGCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCGCCCGGTCTGCGGACCGGGCGAGGATCGCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.80,-18.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //