Array 1 957797-958824 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP024870.1 Spiroplasma clarkii strain CN-5 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    957797	    36	  91.7	    29	....T.....TG........................	AAATAGTTAGAAAGGAGAAACTACAATGG  	
    957862	    36	  94.4	    31	AG..................................	TGAGCGACTAAGCTGGAAGTTGAGGATGGAT	
    957929	    36	 100.0	    30	....................................	TTGTAGTAAACTCCTCATATTCGACCATGA 	
    957995	    36	 100.0	    30	....................................	TCTTTTCTCGGTTATATGGCCCTAAGGCCA 	
    958061	    36	 100.0	    30	....................................	GGACTTGACCCATCACTTCGCTTAAACTCA 	
    958127	    36	 100.0	    30	....................................	TGCACTTGTGTTTAATGCAAGTTTTAATGA 	
    958193	    36	 100.0	    31	....................................	TTTGCTGAAATTTGGATTTTTGATTTTAAAG	
    958260	    36	 100.0	    30	....................................	GCAATTATGAACAAGGTGAGGGAGTGTATG 	
    958326	    36	 100.0	    30	....................................	GATGGTAAGGAAGATTTTTATAGATCATCA 	
    958392	    36	 100.0	    31	....................................	TAGACTTAACAGGTACCTTTGGTAGTTTAAA	
    958459	    36	 100.0	    30	....................................	CTTTCTATAATAGTCTAGTACAAACTCAGC 	
    958525	    36	 100.0	    30	....................................	ATGAATGAAGTATGATTAACTACTTAAGTG 	
    958591	    36	 100.0	    30	....................................	TTCTTTTCTTTTCTCGGAAATGGTGCCTTA 	
    958657	    36	 100.0	    30	....................................	TCCTGGCAAATTGAGCAGACAAAGCATTTA 	
    958723	    36	 100.0	    30	....................................	GCACTTGAGCACAATTGAATTTGATAAAAC 	
    958789	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.1	    30	GTCGCCTATTCCTTAGATATGTCAGATAACTAAAAC	                               	       

# Left flank :   TTTTCAATTTTCTTTTCCACAACCAACTTTCAGAGTTGCTCTTTTTGATAGTTTTGCAATTTAATTTGATTTTCAAAAATTGTTAATGGTTTTCAGTGATTGTGAAAGGACATTATTAAACCATTGGGTTCATACTTATCATCACAAATTATTAAATAAACATTGTTTTCAACAAGTTTAGATAAAACTTGTGTTGTTAAAGTAGTGTAATTATTTTCTAAAACAACACAATTTAAGTCATTCATTGCAAAATAAAGTTCCTTCTTTGCTTTTAGGTTTGTCACCATTAACAAGCCATTTTTTAGAGAAAGTTTGTCATAATTAGTAATTAATAATGTCTTCCATGACATTTAAGTACCTTCTTTCATTTAAATTACTTAGGTTTTCACCTATTTACACTATAACAAAAAAAAATAAACTTATAAGTTTATTTCTAAAATCTTGATTACTGGTTTTAATTTAAAGTAAATTGTTTATTGATCTCTAGTAATTAAAATTTT
# Right flank :  CCTTAAAATCTTAGTCTATCAATGAATAACCAAGGATGCTAATATTTAGAATTGAAATTTGATTAGATAATTGAGATGTTGTAGCTCGAAAATTTTGTTCTTTAAAAATTTCTTTGTTTTTATTTTCATCAGATATAAAAGTTGTATTTATCTTGTGAACATAGCTAGTATCTCCCTTTTTTCCTCTCAATACTTTATACTCAATTTCACTATGTTTATTGATATATGAAAATGTGGTATTTTTAACAAGCAAAACTTCACCACCCTTAAGACTTAAGATACTTTTATCTTTAAAAATATCAACTTTTTTAACTCACTGTGGCTTTGCCTTTTGCTCTAATTTATTCAACTTCAGGCCATAATAAATAGTACTCTCTCAAATATCACCATTTTTACTTGTAAAGTATTTTTCACTATTAAATTTACCTGTTTTTTTGTCAATTGCTACATTTTTTCCTTTAATCAATTGGCTATCTGTAACTGCACCTTTTAATTTTTTA

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCCTATTCCTTAGATATGTCAGATAACTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTCGTCTATTCCTTAGATATGTCAGATAACTAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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