Array 1 953611-952720 **** Predicted by CRISPRDetect 2.4 *** >NC_006300.1 [Mannheimia] succiniciproducens MBEL55E, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 953610 32 100.0 34 ................................ AAAATCAGCAAATAAACTGAGATGTTGAAAATCT 953544 32 100.0 32 ................................ TCAATGATGGTTATGTCTCCATACCCCCCCAA 953480 32 100.0 34 ................................ GCTTTTTGTTGATAAAGGCAAGTATTTGGTTGAT 953414 32 100.0 34 ................................ TATAAATTTAATCATTTGTTTTTTAGGCGTAGAA 953348 32 96.9 34 ........G....................... CTTTCATTGCGTGATTCCTGGGCGTTTTGCAGTT 953282 32 100.0 34 ................................ GATTTCCTGGGCGCTAAAGCCTTTTAGTATTGCG 953216 32 100.0 34 ................................ CGTCATTCTGGCGCCTGTCATCAATGCAAAAGAG 953150 32 100.0 34 ................................ ATTCAGCCGTCGTTGAGGATTTAAGAGCGCGTGG 953084 32 100.0 35 ................................ GCAGCGGTAACAAACGCCGAAAAAGCCGCGGAAAA 953017 32 100.0 34 ................................ GGGTGACCACGCCATGATTGGCGCGCTGTTTGAC 952951 32 100.0 36 ................................ CGAATTTGCCGACCCGGCAGGTATTAGTTATGAGGC 952883 32 100.0 35 ................................ AGTTTTTTGACGCGTGCGTAAATCACGGCTACGGC 952816 32 96.9 33 ..............................G. GCTTATAAAAACATCGTAAGCATAGATTGTTTT 952751 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.6 34 CTCCGCTCTCACACGAGAGCGTGAATTGAAAC # Left flank : ATAAAAATCAATGGGATATGGTGCTATTTAGCCGTGGTAATTAATTTATTAAATCGTCAAGTCGTCGGTTGGAAGCTAAGTCGCTATCATGATAGTGAGCTGGTTAAAGACGCACTGAATCATGCGATGCTGAATATTGAACGCACGGAGCGAATGTTGTTCCATTCAGACCAAGGTAGTATTTATGGCAGTGAAATCTTTACTGATTCAGTTAAGAAACATGGGCTTACACAAAGTATGAGCCGTCGTGGTAACTGTTGGGACAATGCGCCGATGGAGCGTTGGTTTCGAAGTTTTAAATATGAATGGATGCTGAAAGGTGGTTATAGTGATTTTGAAAGTGCTGTAAATGATGTGAGAGAATATGTGATGTATTATAATCACATTCGCCCACATAGCTATAATCAAGGTCTATCTCCGATTTTAGCAAAAACAACTTATCGGAGACTGTTAAATTAGTTGACCACTACAGAAAGTCAAAAAAAGTTTAAAGCATTGGC # Right flank : ACATCCGCTATAGCGGACTCGAATTTCATCGTCCTCTGCTCTTACCCGAGCATAAATGCCCCCTGTAAATTTTGTAATTTTTCGACCGCACTTTTTCGTTCTTACAAAAAGGAAACTAAAATTAGAAACTATAATGACAGAAAACAGGAAAAGTTCTTTGCTCTAACGAAAAAAGCCAGTCAGTGAAAAACTGACTGGCTTTTTTCATTCCATCTTAAAAATGCTGCTAGCCTATTACTTTTGGTAAATATCCGCCTTCAATTAGGAACGGGACGTTCATGATGAGTAAGCCCAGCAATAACGCGATTAATAGGGTTAAGTTTCCACCGATTACTCGATACGGGAGATTCGGATGCAGTTTTCTTGCTCGCCATGCAAGACCGACCGGTAGTACTAAACCGTAGAAAGTGAACATTTGACCGGCATAACCTAACGCGGCAATAAAGCCTTCCGGATAAAATAATGCAAAAGCGAGAGGCGGTAAGAAAGTTAATACGCCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGCTCTCACACGAGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA // Array 2 957010-954864 **** Predicted by CRISPRDetect 2.4 *** >NC_006300.1 [Mannheimia] succiniciproducens MBEL55E, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 957009 32 100.0 34 ................................ TTTTTGGCAGGCGGAAAATGAAAGATTAAAGTAC 956943 32 100.0 33 ................................ ATCAAATAAATCTCGCGTATTTAATACGATGTT 956878 32 100.0 33 ................................ TCCTGCTTGTCCATTAATTAAGGTCCATTCGTC 956813 32 100.0 34 ................................ ACGGATTTTCTCGGCGCCAACAAACCCTAACATA 956747 32 100.0 34 ................................ TTTCAAATGTTTCTTTTTTTATCAGTACTACTTG 956681 32 100.0 35 ................................ TACTGCTTGTTCTGCTTGAATATAGATATACTTAT 956614 32 100.0 34 ................................ TATATTGATTAGCATACAAACTAAACATGTAATA 956548 32 100.0 38 ................................ TTGTTATCGGTAAGCTTAATATTTCCAGTTTAGTCTGT 956478 32 100.0 33 ................................ CACGAAATTCTGAAAAAGAAAAAATCTACATCA 956413 32 100.0 34 ................................ ACAACCCTACTACCACCTACCACCTCTTTATTAC 956347 32 100.0 34 ................................ AACTAAGTGCGCAGAATTGATATCGTCTGTTTCC 956281 32 100.0 33 ................................ TGCTAAAGATACAATAAGTGGCATGAGCAGATA 956216 32 100.0 34 ................................ GATATCTGGGACACATACTACACAATAAGAGATT 956150 32 100.0 35 ................................ GCTTGTTACCCTTATCAGATGTTCTATCGCCTCGC 956083 32 100.0 34 ................................ CACATCGCAATATTGTTTTTTATATCGCCCACGT 956017 32 100.0 34 ................................ CCCCGTTCATCATAAAATGACTGGCGAACGTATG 955951 32 100.0 32 ................................ CGTTTTTTTATCAAAATCAATTGCATGATAAT 955887 32 100.0 35 ................................ GGCAATAAGCAATCCAAGTTTTACGATCAACATAC 955820 32 100.0 33 ................................ TGGTCAAGTCTTTTGGTTGTAGCCCGCAATCGC 955755 32 100.0 35 ................................ TAGTATGGACTCGATGAAAGCAATGTCCGCTGAAA 955688 32 100.0 35 ................................ TGCAACTGACCCCATGACCACACGCACAAGCCCAA 955621 32 100.0 34 ................................ CTTTTGAAAGTGGATTACCCCTTGTGCTTTTGTC 955555 32 100.0 33 ................................ TGTTAAAAAGTTTTTGGCGCGTTGCTCTTTTAA 955490 32 100.0 34 ................................ GTCGATGTCTGTTGGGGCGCCTGGAGGTACCGGC 955424 32 100.0 33 ................................ TCCTATTGGGTTTGATTTTTGGGTAATAAAAAA 955359 32 100.0 33 ................................ TGCAAATGTGTATGCTACTGTTAAGCAGTTTAC 955294 32 100.0 34 ................................ TTGATGGTGTGGGTAACGGCTCAATTATGTTAAA 955228 32 100.0 34 ................................ AAAAATTATCCGCGTATCAAATGAATTATTACAA 955162 32 100.0 34 ................................ CTGCTTCAGCAGTAATTAATCATTATTACAAGTC 955096 32 100.0 35 ................................ GCAGCGGTAACAAACGCCGAAAAAGCCGCGGAAAA 955029 32 100.0 34 ................................ GGGTGACCACGCCATGATTGGCGCGCTGTTTGAC 954963 32 100.0 36 ................................ CGAATTTGCCGACCCGGCAGGTATTAGTTATGAGGC 954895 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 33 32 100.0 34 CTCCGCTCTCACACGAGAGCGTGAATTGAAAC # Left flank : AATTTTCTAAGGAGAAAACCTTATGATGATTTTAATTACATATGATGTGTCATTAGAAAATGAAGGCGGAGAACGTCGATTACGTCATATTGCAAAGCATTGTTTAGATTACGGAATACGCGTACAATACTCTGTGTTTGAGTGTGAAGTGACACCCGCGCAATGGGTCGAATTAAAAGATAAGTTACTTAATACCTACGACAAAGAAACCGATAGTTTACGTTTTTACCAACTTGGAAGTAAATGGAAACATCGAGTCGAACATTACGGAGCAAAACGTGCCATTGATATGTTTAGAGATATTTTAATTATCTAAACACGTTCGCTAACCGGTAGTTCTCATCAATTCCCTAGTTTATTAGCGCATTTATTTTTTCTTATATTTTTAATCAGTTAGAAAATAACTATATTTCTTGCTATACTTTAAGCCGTTATATTCAGCCTGGTTAGCGAAATGGCTATTTTCAAGCTAGATATAATGAGCCTTCCTAGTTAAGGCT # Right flank : CTGGAATGTAGTGGTAGACTAATTCCGCAGTCCTCAATAAGTGGTAAAATAACATCACAAATGAGGAAATATTATGAGAAGAACATTTAGCGCAGAATATAAAGCTGAAGCAGTAAAATTAGTGATTGAACGAGGATATTCGGTTTCTCAAGCTTGCCGAGAGTTAGGTGTGGGTGAAACAGCACTTCGTCGCTGGATAAGTCAAGTTCAAGCGGAGCAACAAGGTTACGTTTTAGCTGGTTCAAAGCCAATTAGCCCAGAACAACAACGAATTCGAGAACTTGAAAATCGTATTAAAGAACTTGAAGAAGATAAGGCCATTTTAAAAAAGGCTACAGCGATTTTAATGTCACTCGAAAACAAAAATACCAAGTCATTACGACGTTAAAATCGCGAGAAATCAACCGGTTATGTGAACTATTTAGCGTGTCTGAAAGTGCTTACTACGCCCATTTGCGCACTGCCAAAAAGCCAGCGAAACACACAGCTTTAGCCGTTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCGCTCTCACACGAGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : NA // Array 3 1630989-1629947 **** Predicted by CRISPRDetect 2.4 *** >NC_006300.1 [Mannheimia] succiniciproducens MBEL55E, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1630988 37 100.0 33 ..................................... TCATGTATTGGCGTCCTGAACGGGATTGATAAA 1630918 37 100.0 36 ..................................... TTTTTAGCATATCTATTGGGTATAGCGCTTGCACAT 1630845 37 100.0 36 ..................................... AGTGGCGTAGTAATTTTTTGGCAAATAGCCCTTTAA 1630772 37 100.0 35 ..................................... TTAGTGACTGCATTCATTTTTACTAAAGTGATTTT 1630700 37 100.0 34 ..................................... TGTTTCACATACACCATATTTGGCCAAATGTTTA 1630629 37 100.0 35 ..................................... TTAATACTTCTTCGACAATAGATGTATCAAGTTTA 1630557 37 100.0 36 ..................................... ATTGGTAGTTGATGGTTAATAATTGATATTGGTTAG 1630484 37 100.0 35 ..................................... GATTTGGATTGTGACTAAACGACGAATGAATTTGA 1630412 37 100.0 33 ..................................... ATATATAATTTGCCGTCATAGCCGGTCGTTGTC 1630342 37 100.0 34 ..................................... AGATAACTCTCGTCCATATCGCCGTAAGCGTTTT 1630271 37 100.0 36 ..................................... CCATTCATTGCGTCACTAGTTTTGTAACGATAGTTG 1630198 37 100.0 34 ..................................... TTTGGAGTAATCTCACTGGTGCGGTATTGGTAAT 1630127 37 97.3 35 A.................................... GCAGTTAAATGTACTGATTTTTTAGCCATGTTATT 1630055 37 100.0 35 ..................................... GCAGTTAAATGTACTGATTTTTTAGCCATGTTATT 1629983 37 81.1 0 ....G........................C..ATTTT | ========== ====== ====== ====== ===================================== ==================================== ================== 15 37 98.6 35 GTCGAAAGACCTTGCCCTGTCTTAAAGGGATTGAAAC # Left flank : TGAAAAATGCGATATTTAATTGGTTATGACATCACGGACAGTAAACGGTTACAGCGCATTTATCGCAGAATGATTAAATTTGCTACGCCGTTACAATATAGCGTATTTCTATTTAACGGGACAAAAGAACAACTTGATAAATATATGCAAACAGTTTTACGATTATATAATAAAAAAGAGGACGATTTACGAATTTATCCTCTTCCGGTACAGGCAAAATATTGGCAAATAGGGAAAAATCCAATGCCGGAGGGGATAGTTTTAAGTACATTTGTATTTTAATCATTTTTATAAAAATAAGTATTATATGAAAGAAAAGGTACATAACATTTGATAAGAAATTTGTTATACTTCTTTTGTCTTTTTCTGTCTGGAATAGTAAAATTTTTTAATTGTATGATTTTTATACACAAAAATAAGCCAACTTATTATCGCACTATTTTTTACAAAAATATGTTTTTTAACCTATTGATAAGTAAGATGTATTTTTGCTTACCGCA # Right flank : ATTATCGGACTTTGTTATTAGACGATCATATCGACGTTTTTCTTTTGTCTGTATGCTAACCGGAGAGAATTCAATTTGAATTTATCTAATGTATATTTTGGAGCCGTGGTTATCATTTACTTGTTTATTTTCACCGCTAATAGATAAATTCAGCACAATATAAAATCTATTGATAATAATTTCATTGGGAATATAAGCCCGTTTATTTATAATAGACGGGATTATTTTTTTATTTTGAAGTATTTTTATGTTTGAACAAGAAGCATGGCAGCCAAGCGCGCCGATTAAAACTCTTTTTACCCGTGCAAAAATTATCAGAGAAATCCGTAAGTTTTTTACCGAGCGAGGCTTGTTGGAAGTGGAAACACCGGTGTTAAGCGAGTTCGGCGTTACCGATGTGCATTTATCCACATTTAATACGGAATTTATCGCGCCGATTGGTGAAAATTCAAAGACCCTATGGCTGATGACCAGCCCGGAATATCATATGAAACGTCTGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACCTTGCCCTGTCTTAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //