Array 1 38779-39470 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHG01000010.1 Lactobacillus helveticus strain IMAU20035 Scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 38779 30 100.0 36 .............................. TGAAGGTAGGATTAGTAGATCGCATTTCTGCATTGG 38845 30 100.0 36 .............................. ACTTTTGCAGAAGAATATGAGGATTATACAAATACT 38911 30 100.0 36 .............................. AGGAATAAATCCCAGGTAGCTCTACGATATTAGGAG 38977 30 100.0 36 .............................. CCGAACCGGGACCTACTGCATGGGGGATTGAGTCAG 39043 30 100.0 37 .............................. TAGAGAAATTAATCTCCAGAGTGGCTTTCAATTACGA 39110 30 100.0 38 .............................. AATGAGTGCTTTGTTTGAAAAGTAGATTTTAGTGTCAA 39178 30 100.0 36 .............................. GCTAATAAATAGGAGGAATCAATTATGGAAAAATTA 39244 30 100.0 36 .............................. CCATAATGGCGGTTTGACAAATCTTGTGCAGATTGT 39310 30 100.0 36 .............................. GTAGAAGAACTTGAAGGGCAATATTGGCACAAGAAG 39376 30 100.0 35 .............................. GTAGAGCTAGGAACCACGATAGCTTACAACAAAGA 39441 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : GTCGATCATGATTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 16-703 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHG01000034.1 Lactobacillus helveticus strain IMAU20035 Scaffold34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 16 30 100.0 35 .............................. GGTGATTTGGTTATCTTTGGTCATGGAACTGGTGC 81 30 100.0 35 .............................. ACTGATGATGGAGCTGTACTGTCTGCAACTATAAA 146 30 100.0 36 .............................. CTTATATTGGCTATGGATTAACTGAAACTGAATACC 212 30 100.0 35 .............................. CGGAATTATTAATATTCCATTGACCAATACAGGTA 277 30 100.0 37 .............................. CAAATTCTAGAGTGCCACGAGGGCCAGTTTTTAAATA 344 30 100.0 35 .............................. TAATTCAGGTGGTAACGGAATGCTTGAACCCATTG 409 30 100.0 35 .............................. CTTGAAATTGTGTTGGATGCACTTCACCGTGCTTC 474 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 540 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 608 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 674 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 95.5 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : TAAAAGTAAAGAACCG # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACGATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGATGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 16-306 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHG01000171.1 Lactobacillus helveticus strain IMAU20035 Scaffold171, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 16 30 100.0 35 .............................. AGTTAATACGGACGCTTTTGAGCAATCAATAGCGT 81 30 100.0 35 .............................. TCTTTAGTAGAGCGGTCAACAGACTTCTGTGCTTC 146 30 100.0 36 .............................. ACCAATGGTGCATTATTGCCAAAGGGAGGCGAATAG 212 30 100.0 35 .............................. CGTGATAAGCGTCCAAAGACGTTGTGGGAACTTGC 277 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 100.0 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : TAAAAGTAAAGAACCG # Right flank : GTCGATCATGATTGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //