Array 1 47233-46054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHQK01000011.1 Acinetobacter oleivorans strain PF1 c11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 47232 28 92.9 32 ...CG....................... TTTCACTTGAATTTGCTGTTCAGACATTTGGT 47172 28 100.0 32 ............................ ACTCAATCAGACCACCTTCATTAAATTGTTGA 47112 28 100.0 32 ............................ TTTAAAGCTTTGCCCACACATAACGCAATTAA 47052 28 100.0 32 ............................ ATCCACGGCAAAATAGACGCTGGTGCCGTGTC 46992 28 100.0 32 ............................ ACCAGATCACCACGGTAAATAGCAGCAATACC 46932 28 96.4 32 ...G........................ ATTACCGCCATAAGCCTCAAAAGTCACAGTAA 46872 28 96.4 32 ...G........................ TTGCACAAGGCGAACGGGAATTATCTCAATCA 46812 28 96.4 32 ...G........................ CATCCCATTGCCAATCACCATTATTTGAAGGA 46752 28 100.0 32 ............................ ATTTAGAACAGCGATATTTTCATTGACTAATC 46692 28 92.9 32 ...G........T............... GTAATGCTTTGAAGGTTTTTCGCTGCACTCAC 46632 28 89.3 32 ...G........AT.............. AATACCAGTGGCCAATAACCTATTGCGAATAC 46572 28 89.3 32 ...G........GT.............. TTGCATTCCTGACCAAAAGATTTAATGGTGAC 46512 28 92.9 32 ...G...........A............ CAAACATGAAAACAGAATACGCGCCTGATAAT 46452 28 85.7 32 ...G......A.TT.............. ACATGGGAGCTTCCATTTAGATGCGTTATCAA 46392 28 89.3 31 T...T.......T............... CCTACGGGCAACATCCCTAACACACCCACCT 46333 28 92.9 32 CA.......................... ATGAGGATGCGGACAAGTTTTGCAAGTGTTGG G [46328] 46272 28 92.9 32 ...CG....................... CAAACATGTATGCAAAAGACCTGTTTAATTAT 46212 28 92.9 43 ...CG....................... TAAAGCTAAAGGTAAAAAGATTTTTTTCATTAGTTACTCATCA 46141 28 100.0 32 ............................ TTGAGGTAACGATTTTGAGCTTGTTCTGTCAG 46081 28 78.6 0 ...CG.......TT..........AT.. | ========== ====== ====== ====== ============================ =========================================== ================== 20 28 93.9 33 GTTACTCATCGCCCAGATGATTTAGAAA # Left flank : ATTTAGAAATTGATCGACTCAAGCAGGTACATGCGGTTCT # Right flank : TTTGAATCATAAAAAGAAAAAGCCCCGAAACTTACGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCATTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCTTGTGACCCGACGAACAGGGTACAAGTTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTACGGTCGGGTTCCTAAACCACAAGTATTCTAGGAAGCGGACAAACTGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTAAAATATGCAAATTTGATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCAGCGTCGAAGCCAATAACATCCCCATGAATGTATGAACATCATAGCATAACTAAAATAAAATACTGTGCATTTTATCAACAGTCCGCTACTGATGAACATATTTACA # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTACTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 183-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHQK01000014.1 Acinetobacter oleivorans strain PF1 c14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182 29 96.6 32 A............................ AAACTTTCTATATTTGAAGAAAAGCACGACCT 121 29 100.0 31 ............................. AAGTTCATGTGCAAGTTTACCTTGCCACTGA 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 CGTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : GACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTTATGCCACTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGAAATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCT # Right flank : AWMGATCGACTCAAGCAGGTACATGCGGTTCTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched CGTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5288-5914 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHQK01000014.1 Acinetobacter oleivorans strain PF1 c14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5288 28 100.0 32 ............................ ATCTTCCTGAGCAATCACACTGACTTTAGTTC 5348 28 100.0 32 ............................ ACCAGGATTGCATCCTGAATATTTACCGTTTT 5408 28 100.0 32 ............................ TATGAAGCTATCAGAGTTCATTAACGGTTATT 5468 28 89.3 32 ...G.......CC............... TTATTCAAATCTGTCATGCTGCCTTCTCCATA 5528 28 82.1 32 ...GC......CCC.............. CACCAAGTTGTACACACAGCAAGTGACCAGTC 5588 27 85.7 33 ....C......C.C..........-... ATGATAGTTCAGAGCATGTGAATCTCCAAAATG 5648 28 78.6 32 A...A....T.CCC.............. ACAAATTCCGCGACATGTTCAGCAAAATGCCC 5708 28 89.3 32 ....C......CC............... GGTACTGACGCCAGTGGGATGATTATTTCGAC 5768 28 85.7 32 ...GC.....AC................ ATGAAAAAGATTAACGAAGTTGAAAACAACGC 5828 28 92.9 32 ...A.......C................ AAAGGGGAAAGTAAATACAATCTTATTAAATA 5888 27 85.7 0 ...A.......CC...........-... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 89.9 32 GTTTTTCATCGTATAGATGATTTAGAAA # Left flank : AAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATCCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTAAAAAATGAAAGTGTTGAAGTAGAGATCTACGACAAATTAAGTCGTAGAGACAACTGGAGGAAAATATTATATGCTCTATAAATTTAGCCTAAGACGATTAGGTTATATTTTTTGAAATTAGAAAAAATTAATATAATTCAATGAATTATACTGTTGTTTTGTTTTGAATTTTTTTGATTCATTAAAACTTTATATTATTGTTTTTTAAGAGTTTTTGTTTTTTACTTAGCTCTA # Right flank : AGAGTTCCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATTATATTCGAAGTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATCTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGATGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAAGTAGCCACTCGACAAACTGCGGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTGGCATGGGTTGTGGGAGCAAAACATAAATTTGCGCACGACGGTGCATATCCAGTTGCATCGACCAAAAAACAGCAAAAACTACTGATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCGGGTGCAGCAGGAGACATGCATGATATTGGTAAAG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATCGTATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTCATCGTATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //