Array 1 5320-6812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKU01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5320 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5381 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5442 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5503 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5564 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5625 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5686 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5747 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5808 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5869 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5930 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5991 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6052 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6113 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6174 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6235 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6297 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6358 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6419 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6480 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6541 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6602 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6663 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6724 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6785 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22944-24908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKU01000022.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22944 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 23005 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23066 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 23127 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 23188 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23249 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23310 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23372 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23433 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23494 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23555 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23616 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23677 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23738 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23799 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23860 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23921 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23982 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 24043 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 24104 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 24165 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24227 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 24288 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [24330] 24330 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24391 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24452 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24513 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24574 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24635 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24696 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24757 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24818 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24879 29 96.6 0 A............................ | A [24905] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //