Array 1 503066-505345 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIQ01000002.1 Listeria monocytogenes strain FSL L7-0623 NODE_2_length_510719_cov_27.425721, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 503066 36 100.0 30 .................................... GATGCGTTTGCTATAGTTCGCACCACTCCA 503132 36 100.0 30 .................................... ATACACTAGTGCGCTATAATAGCACGATTA 503198 36 100.0 30 .................................... ATTTGAAAATTTCACATATCTGGCAACAAG 503264 36 100.0 30 .................................... TCTGGGGCTTGCGTGTCTACCAAAACGACC 503330 36 100.0 30 .................................... AATTCTACTGTTTGCTTATTCGATTGATGG 503396 36 100.0 30 .................................... TTCATCTTTAATTAGTTTTATATGCGCATC 503462 36 100.0 30 .................................... AAGCTGATACGCCTACGAAACTGAGTGGCG 503528 36 100.0 30 .................................... CGGATTCTTGATATTGTCCGTAAAGGTCTT 503594 36 100.0 30 .................................... GCGGGAACAGGTAGTTTAACGATTTGCAAA 503660 36 100.0 30 .................................... TGATACAGATAGTTTTGAGGTAAGCTACTG 503726 36 100.0 30 .................................... TCACAAAAGATAATAATACTTTCAAAGTTC 503792 36 100.0 30 .................................... TTTCGATATTAAGAAACGAATTTGAAGTAT 503858 36 100.0 30 .................................... GCTGCACTATTAAAGTGCCATGAAACATCT 503924 36 100.0 30 .................................... CTTCCAATTTTGATTGCTGTAGGTACTGGC 503990 36 100.0 30 .................................... CCAAAAAGTTTTCGCAGCACTCGCTGGCAG 504056 36 100.0 30 .................................... AATTCTACTGTTTGCTTATTCGATTGATGG 504122 36 100.0 30 .................................... TTCATCTTTAATTAGTTTTATATGCGCATC 504188 36 100.0 30 .................................... AAGCTGATACGCCTACGAAACTGAGTGGCG 504254 36 100.0 30 .................................... GTAAATACTTTTTATTCGTTAGCTTTGTTA 504320 36 100.0 30 .................................... GTTCATAGCCATGTTATTTAAGGTTGACTC 504386 36 100.0 30 .................................... TTTACGAAGTGCCGTTTATAGTCGTGATGG 504452 36 100.0 30 .................................... TAGGTTTTGATTGCTCCCATGCAAATGACA 504518 36 100.0 30 .................................... TGTCCGCGGCGGCAAGCGCTGGCACGGCTC 504584 36 100.0 30 .................................... ATTGCTTACTGGTTGCTGTGCTTGTGGAGC 504650 36 100.0 30 .................................... CTGAGTATTAAAGTTATGGCGTAATAGATG 504716 36 100.0 30 .................................... AAATGAAAAATAATCAACACGAAAACATTG 504782 36 100.0 30 .................................... TTGAAAAGTTCTTTTTTGTCCCGCTTGTAA 504848 36 97.2 30 ............................G....... AGGATATTTGGAACTCTGGTATGAAAAGGA 504914 36 100.0 30 .................................... AATTTTATTTACACTCGTTATCAATTGCCC 504980 36 100.0 30 .................................... TATAACGTTAGGGGTAACGCTAGGCACCTT 505046 36 100.0 30 .................................... TTTGATTGTCGTTAATTTGTCTGTTCCACT 505112 36 100.0 30 .................................... AGAAACAGTTATTCATTATCAGCATGACAC 505178 36 100.0 30 .................................... TCGTCCCCCATTTGTTCGATTTCGCTAATT 505244 36 100.0 30 .................................... GGGCTGGTTATTTTAGGCGGGGGAGCGCTT 505310 36 83.3 0 ........................CA.C.A....CA | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAATTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAAGATAAAATGCATCGCAATTACCAAATCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAAGATGGAGAAAGGTTTTCTCGCCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTATAAGTGAAGGGACCTGCCGCTGAAAGGTGAGGGGCAAAATAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGACACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAAAAATGAAAACCGATATAACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 699795-699190 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTIQ01000001.1 Listeria monocytogenes strain FSL L7-0623 NODE_1_length_872827_cov_20.132661, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 699794 29 96.6 34 ..............T.............. GAGGAAGCCGCAGCGATTGCAGCTCATATCGATC 699731 29 100.0 35 ............................. ATTGTATTTCGGTTTCCGTATCCGTTTCCGCCATC 699667 29 100.0 34 ............................. CAAGAAGAACGATATGTTCCTGAAGAGGATTTTG 699604 29 100.0 37 ............................. AAATGGCATGCGTTAAGACAATCCCATTCTGCATCAT 699538 29 100.0 34 ............................. TAAACTACAGATTCAAAACCATCATTTTCATGTA 699475 29 100.0 36 ............................. CAAGAAGCAGCAGCAATTGCAGCTCATATTGATCCC 699410 29 100.0 34 ............................. GCAATACTGAAAGCTTGGCACGGAAATCCTCCTG 699347 29 100.0 36 ............................. TCGACATAACACATATATTTAAAATCATTAAAACTA 699282 29 96.6 35 ..............T.............. GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 699218 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 96.9 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTGATCTGTCGACCTTGAGTAGCGTGAAAAATACCGGAGACCGACAGAAAATTGTAAGTGGCTGGGGGAAGGGAAGCTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CTCCTCCATACACAACTCCACCACCATCCATCAAACAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTACCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //