Array 1 211617-215916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLY010000002.1 Rothia mucilaginosa isolate Rothia_mucilaginosa_BgEED27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 211617 29 100.0 32 ............................. AATGGTCGTCACCATCGGCACAAGCGCACCAA 211678 29 100.0 32 ............................. CTGCTTCCGCGGGTCCCACAGCATTTCGAGCC 211739 29 100.0 32 ............................. GCGGGCAAGGTGCTATCAACCATAGCATTTAA 211800 29 100.0 32 ............................. GCGGGCAAGGTGCTATCAACCATAGCATTTAA 211861 29 100.0 32 ............................. GGGGATTTACATACCACCGCGGCGATCTTGGA 211922 29 100.0 32 ............................. TGCCACATCAGCAAAAATAACCGTTGATTCAC 211983 29 100.0 32 ............................. GCCGCCGGGGAATGGGAAACCGTGAACACCAC 212044 29 100.0 32 ............................. TAACGCCGTGCTGTACAGTGCGCCCGTAGACG 212105 29 100.0 32 ............................. TAGAGCCGCGTGATGTCTTCTTCGCGGCGGCG 212166 29 100.0 32 ............................. CATGCGCAAATGTTACGGTATTCCTCGTCCTG 212227 29 100.0 32 ............................. CGTAACCGAGTGTGAGCGAGAAGACATTAACT 212288 29 100.0 32 ............................. CTCCGACGTGGGCGCGTGACCATTGACATTAG 212349 29 100.0 32 ............................. AAGCATGATTGTGCCCGCTTTTACATGGAGGC 212410 29 100.0 32 ............................. AGTCCGTAAAGTGCTTCCCGTCCAATGAGACC 212471 29 100.0 32 ............................. AGACGCGGGAGTGTGGAGAGACGACTCGCGCG 212532 29 96.6 32 ............................A AACCGCGCCGGTAAAAATGTTCTTGATCGGAG 212593 29 100.0 32 ............................. GGCCAGCAACACGCCCGGTAGCGTCTCCAAGT 212654 29 100.0 32 ............................. CAGGAAAACCGGCGCTCGTAATATCGCCGTCT 212715 29 100.0 32 ............................. GTGGTCTTGCTTGTGTCTCGACAGAACGGAAA 212776 29 100.0 32 ............................. GACGGCGCAGGTATCCCGTGCTATTGGTCTCA 212837 29 100.0 32 ............................. AATGCCGGTTCCCCAGGCGAAGGCGGGGGAAG 212898 29 100.0 32 ............................. TGAGGGGTGCCGGAACCGTCAATATAGGTTCC 212959 29 100.0 32 ............................. GGTAGGCCGGAATCTGGTCCTTAATCTCTTGA 213020 29 100.0 32 ............................. ACCGGCAATATCCGCGCGGCCTCTTTGCGCGG 213081 29 100.0 32 ............................. ATCCACGAATCGGGTTGAGCGGGCCTCACCTG 213142 29 100.0 32 ............................. CAGCCACAACGCTGTCGAACGGAAGAAAGACA 213203 29 100.0 32 ............................. CCTCTTCTTCTAACTTCATCTCACCGGTTTCA 213264 29 100.0 32 ............................. ATAGATGAGCGTTTCAATGGTGTAGGCTCCTG 213325 29 100.0 32 ............................. AGGGTGCACAGACCCGGCAGGAAGTCAGTATA 213386 29 100.0 32 ............................. CATTCGGAGGAGACCTTCACGTCGATGCGCTG 213447 29 100.0 32 ............................. AGGCGCTCCACGCTCTCTACTTGCCAGGCTGC 213508 29 100.0 32 ............................. CTTTTCAACGGCCTGGGATGCCCGGTCGAACT 213569 29 100.0 32 ............................. GGCTACGAAACCCTCTGGGATATCGCTGAAAC 213630 29 100.0 32 ............................. CCACGAAAGGAAAAAGAATCATGGAACTCTCC 213691 29 100.0 32 ............................. TGCCTTAGATATGGAATAGTCATCATGAGAGC 213752 29 100.0 32 ............................. GCACGCCACACACCGAGCACAGTGCCGCCGGT 213813 29 100.0 32 ............................. CACCGCACGTCGGTGCGGAAGTCTGCGAAAGC 213874 29 100.0 32 ............................. CTATAATGGACTTGCGCCCTAACGAATCCGCA 213935 29 100.0 32 ............................. ACACCCAGATGCCCACCGGCTACCGGCGCGAG 213996 29 100.0 32 ............................. CGTGCAGGAGGCTGCCCGGCTCGGCCTGGTGC 214057 29 100.0 31 ............................. CACAACACATCCCCCCCCGTCGTATGAGATG 214117 29 100.0 33 ............................. TATGTCTGCCTACGCAGCCATAACTTTGGTCCT 214179 29 100.0 32 ............................. GAATTAAAACCTTGCGGTTCAAGGATGTTTGC 214240 29 96.6 32 ............................T GAGTCAAGCAATTGTAGGGAAAGCTTGCATCA 214301 29 100.0 32 ............................. CATGAGTGAAAGCAAAACGCTACGGGGCAATG 214362 29 100.0 32 ............................. TCATCGACGGCAAGCAGCCAGGGCGTTTCAGA 214423 29 100.0 32 ............................. CAGTGCAGAATATCCTCCAGAGTGCCGAACTC 214484 29 100.0 32 ............................. AACCCAGAGAGTGCGCTTACCAGTGTCGTTAG 214545 29 100.0 32 ............................. TGGTCCTTCAGTGCCGGGGCGAGGGTCTTCAA 214606 29 100.0 32 ............................. AGGGAAGTCGGGGACGGAGGAGGAGAAGACGT 214667 29 100.0 32 ............................. GCTTGGAAGGTGCGTGACCGCGCCTATATTCA 214728 29 100.0 32 ............................. CCATCTTCAATCTCTACACCGCCGGTTGATAC 214789 29 100.0 32 ............................. TGTTTGAACATGCTAAGGATTCAGCTGTACGG 214850 29 100.0 32 ............................. GCTACGAACGCGAGGTGTTCGCCCGCGTGCCC 214911 29 100.0 32 ............................. GCGCTGCTGGGTGATTATGCTGAGCCCCAGAC 214972 29 100.0 32 ............................. ACCTAGACCTGCACGCCCGTAACACCTCCAAT 215033 29 100.0 32 ............................. GAAAAACCCACCCGGTGCGGGTGGGTCTGGTT 215094 29 100.0 32 ............................. GTCAGAAGCCTCAACCGATTCTTCTTCAGTCT 215155 29 100.0 32 ............................. CCTAAATATCGCGTTGAGTATATCGTGGCTTC 215216 29 100.0 32 ............................. AGTGGGTTGACTGCCATTCCTCGTTTTTGCGG 215277 29 100.0 32 ............................. GCGGGACATGGATGTTTCCGACCGTGAAGATG 215338 29 100.0 32 ............................. GAATGGCTCCGTGATTATCTCATGGACGGCGG 215399 29 100.0 32 ............................. CAAGAAATTTTAGAAAAATTTTCGGCTAAATA 215460 29 100.0 32 ............................. GAGGCCCGCCGCACTGCAAAGGAACAGCACCA 215521 29 93.1 32 ........................G...G GTTCTCTTGATTAGTGCCGTTGTCTTTGTCCT 215582 29 93.1 32 ............T...............G CGCTGCGCCAAGGAAGAAGCCGGAGCCAGCTT 215643 29 79.3 32 ........T...T.G.T....G......G CGACCGGCTGGACCCTCAGCCGCGAAAAATGC 215704 29 100.0 32 ............................. GCTGGCATTCCTTAGAATCCTCTTGAGGTCGC 215765 29 96.6 32 ............................G AGTGTCTCTATTGCTTGGGGTCTTGGGGACGA 215826 29 100.0 32 ............................. TATATTAAGGGCAATAATGAAAGAAACTCAAC 215887 29 72.4 0 ..A........A.TC.........G.TAA | C [215908] ========== ====== ====== ====== ============================= ================================= ================== 71 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : GTTTGTGGAATGAGCAGGGTGAGGCTCAGCGCGGTGGCATGAATTATGGTGACGGAGGGGCGGACTGATGATTGTTATTGTTTTGTCTGCTTGTCCGGTGAGTCTTCGTGGTGATTTGACGAAATGGCTTTTGGAGATTAATCCTGGGGTTTTTGTGGGTCGTGTGAGCGCTAGGATTCGTGAGAAGTTGTGGGCGCGTGTGCTGGAGTCGGGTGGTACTGGTCGTGCGACGATGGTGTTTCCGGCGGACAATGAGCAGCGGCTTGAGTTTCGGGTGAATAATGCGGATTGGGAGCCTGTCGATTTTGAGGGTGTGAAGCTGATTTATCGTCCGGTGGTTCGTAAGGTTGTGCCGAAATCTGGGTGGAGTAAGGCGAGTAGATATCGTCGTGCTCGTCGGGGCTAGAGGTAACTATTTATCGTGTATTCTGGATGTGGGCTCTGGCTTCAAAGTGATTCTATTTTGCTGATGTAGGGGGTAAAACCCCATGTCAGCAAGT # Right flank : AGGCCCCTCGGCCCGCAACAATAAGCTGCAGGTCGAGGGGCCTCCTCACGCGTTAGCGAGTAGAAAGGGCAACGCCCGAAAGCTAGGGAACTCCCTACGCCACCACCGCCTCCTTAGCGGAGGTGCCGCTGCGGGTCCACAGTAGGAGTGCTGCCACGCTGTTGATGATGTAGAAGACGTACTTGCCGACGTTCGCGAAGTTGCCCTGGGTTAGCGCCTTCACGCACTGCACCAGGTTGTAGAACAGCCAGAACTGCCACTGCATCGACAGCTTCAGTGCGTTCAGAATGTTCGCTGACAGGGAGAGGCCGAACACCACGGTCGTAATCCAGAACAGGAACGTTGTCTTGCCGCCGTAGCCGATGTAGTTTGCGATGAGGGAGAACGCGAATGATCCCACCACGATGCCGGCGATGATTGCCCGGCCTTTCGCGCCGGTCGGCGGTTCTATGGCTTTGCCGCGTTCGGAGTTCTGCCACCTACGAATTGCGAAGGTGTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //