Array 1 2223570-2224917 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIGC01000004.1 Pseudomonas aeruginosa strain KOL14.W.495.33 Scaffold_4_length_3150075_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2223570 28 100.0 32 ............................ AAGGACTACGTGTTCAGCAGTCTCGGTGGCGT 2223630 28 100.0 32 ............................ GCCCGGTCAACTGGCAGCCACTTGTTCGGGCG 2223690 28 100.0 32 ............................ GATCAGGGTCATGAGAGACACCGCTAAAGTAA 2223750 28 100.0 32 ............................ GACGAATCCGGGCGATGGTGGCGGCGATGGTG 2223810 28 100.0 32 ............................ TTGAAGGCCATGGGCGTGTAACTCGACGGCAG 2223870 28 100.0 32 ............................ TTTGAGGGTATGACCATGAAGCGAATCGACGA 2223930 28 100.0 32 ............................ TTGAAGGCCATGGGCGTGTAACTCGACGGCAG 2223990 28 100.0 32 ............................ TTCCTCGAACACGCCATCAGCAGCCTGGAGGT 2224050 28 100.0 32 ............................ ATCGCCGGCGCCGAGCGCGAGACCGTCTACGG 2224110 28 100.0 32 ............................ ATCAGCGGATCGGCGCCCATACGCTGCGCCAT 2224170 28 100.0 32 ............................ TCGCTGACGATGACCGGCGGCGCCTCCGGCTC 2224230 28 100.0 32 ............................ GCTGATCGCCAAGCGCGACAAGTCGACCGGCC 2224290 28 100.0 32 ............................ TCGGGGTGGCGGGCCAGGTTCAACGCCAAAGC 2224350 28 100.0 32 ............................ ATACTTACCAGTCGCTCCAGGCCCTTCTTTTC 2224410 28 100.0 32 ............................ TGGTCACTTGGCGGCCTGCTGGCGCTTCAAGT 2224470 28 100.0 32 ............................ ATGAACAGCGACACGGCGGCAAGGTAGTGGGC 2224530 28 100.0 32 ............................ ATATCGTGCCTGTCTTGCAGTCCTATCACCCC 2224590 28 100.0 32 ............................ TCGAACATCGGCGAGAGAACGTCTGGCTCACA 2224650 28 100.0 32 ............................ TGCAGGCCGCCGTCGAGCAATCCGCCGAGACG 2224710 28 100.0 32 ............................ TGTCGTTGTTATCGCTGTCCTGCCATTCGTCC 2224770 28 100.0 32 ............................ TGGACATCCTCACCGACCTGATCGCGCAGCAG 2224830 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2224890 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAAGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2234855-2233446 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIGC01000004.1 Pseudomonas aeruginosa strain KOL14.W.495.33 Scaffold_4_length_3150075_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2234854 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 2234794 28 100.0 32 ............................ GAACAAATGCGGCAGTGGCTCCTCGATCTCCG 2234734 28 100.0 32 ............................ ACCAGTTCCACCGCCATCACCACCAGGGTCTT 2234674 28 100.0 32 ............................ CTTCAACCTCGCGGCATCCGCAACAACAACCC 2234614 28 100.0 32 ............................ TGGAATGACCGGCCCGTCGTTGAACAGCACGC 2234554 28 100.0 32 ............................ AGTACTTCGCAGCGAGTAATTGCAGAACCCCT 2234494 28 100.0 32 ............................ TGGTGCTGATGGAGCATCACGACCGGCCGAGC 2234434 28 100.0 32 ............................ ATCCAGTAAGCCCGCTCGCCCTGGCGCTGGGT 2234374 28 100.0 32 ............................ ACTCCTCAGGCGTATCGAACTCGACCCACTTC 2234314 28 100.0 32 ............................ CTCACCTGCTGGCGAAGCTGGATCGACCGGTA 2234254 28 100.0 32 ............................ GGCACGACGTGCGTCAAGACGCCGACTGACCC 2234194 28 100.0 32 ............................ GGCATAAGTCGGTGGCATCCGCGTGTCGTCGA 2234134 28 100.0 32 ............................ GCATGCAGGTGCGAAGAAACACCGATTTCACT 2234074 28 100.0 32 ............................ ATGTGGTCGGCGTAGCTCCAGGGGCGATGGGC 2234014 28 100.0 32 ............................ TGCATCTTCACGGTGACGGTTCGACCGTCCTC 2233954 28 100.0 33 ............................ ATGGCGGCTCCTGTCGATGATAAGCGCCTGCAT 2233893 28 100.0 32 ............................ TTGGCAAAGCTGCTGCTGAACTATCGAAAGGT 2233833 28 100.0 32 ............................ AGTTAGAGCCGGCAGTCGGCCTGCTGTTCGTT 2233773 28 100.0 32 ............................ AACCGGTCGCAAATGACTGCAAGGGCTGCTTC 2233713 28 100.0 32 ............................ TGCGCCAGGTGCTCCACCAACGCGAGGGGGCT 2233653 28 100.0 32 ............................ ATGCACAGCGCGTCGATCCGCGGCAGCTTCAC 2233593 28 100.0 32 ............................ TTTCCTCGGTGATGCCCCGGCGAACCGGGGCG 2233533 28 100.0 32 ............................ TGCGCGCCGAGGGCGAAGACCTCGAGCAGAGC 2233473 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACACACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGTTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGGAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTTCTACCCAACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //