Array 1 1820-1012 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPL01000102.1 Vibrio cholerae strain A12JL4W81 NODE_172_length_2591_cov_30.068314, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1819 28 100.0 32 ............................ ATAAGCCGACATAATGCGAAGTAAGAAACAGC 1759 28 100.0 32 ............................ TCTGCTAACTTTTCTTGAAGCGTTGTCATTAT 1699 28 100.0 32 ............................ CACGGTGTAAGTATGTTCAGTGCCGAACTTTT 1639 28 100.0 32 ............................ TCAGAAATCGCGGCCAGTTCTTGTCAGCGCAA 1579 28 100.0 32 ............................ AACAAGCCGATTTCACAGTCTTTCCCGTTGTC 1519 28 100.0 32 ............................ AAAATGCGGATGCAGTAAGGCTTATGTTGAAA 1459 28 100.0 32 ............................ AGCAAGCTTTCGTATGTGATGGAGATGGTCGA 1399 28 100.0 32 ............................ TAGAGGCGGTGGCGAAGCTTGGCGAGTCAGTG 1339 28 100.0 32 ............................ TTGTGCGTATTTCATTTCAATTTCCCCTTACT 1279 28 100.0 32 ............................ TTGAACAGTTGGGAGGCCAACCCCCAAGTTGT 1219 28 100.0 32 ............................ TGTCACCGCTGAAGAGTTATTGAAACCGGAAG 1159 28 100.0 32 ............................ TACACCCTGAACACCAGATGTTAGATATTGCG 1099 28 100.0 32 ............................ ACCATCGCCACCCTGAAAGGGGAAGCCGCAGA 1039 28 96.4 0 ................A........... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCAAAAAATCATTTTAAAACTCAATAGCGGACAAACATTGCTAGTTGCGCATAACATCGACTTAGCACCGAGAATTCCGAACTTGAAAGTTGGTGACAGTGTTGAGTTTTATGGTGAATACGAATGGAACAAAAAGGGTGGAGTTCTTCATTGGACTCATAAAGATCCTCAAAATCGTCATGCGCATGGTTGGTTGAAACACAATGGCCAGGTGTACGAGTAAATTCACCTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGGGGTTACGGTTGTTGTATTTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAGAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCTGCCAGTTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTACGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATGCTTAATCCATAAAAATCAGCAGGTTGTAATTGTCGATTCCTTTGGCATTTCGTTCAGGTTTTGTCGGCAATTCAATATTGTTTTTCGCTGCCTAATGAAGCGGCAATGTGTCTGGCGCCGTAAATCCTGAGTGATTGCCTCATTGGAATGTTGAGTCTGCGCGAGGTTAGTATTGTTGTCTCAAGTCGCTTTGAGCAGTTTGGTGCCTTTACTTACAGGCTGAAAGTCAGTCGGCAATTGAGCATTGTTTTTCGCTGCCTAATGAAACGGCAATGTGTCTGTCGCTGTAAATTTCAGTGTTATTGCCTCATTGAGTTGTCGCGCCCATGCGTGGTGAGTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8211-7341 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPL01000118.1 Vibrio cholerae strain A12JL4W81 NODE_204_length_8357_cov_34.862030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8210 28 100.0 32 ............................ ATTCCAAGCCCTTACAGCTTGAATTCTGGTCA 8150 28 100.0 32 ............................ TGTGAATGTAAATGCCTCTTGAGGGCGCTTTT 8090 28 100.0 32 ............................ AACAAGAAAAGCCGCAATCAAGCGGCATGAGG 8030 28 100.0 32 ............................ TACCGAATCAAAGGGGGTGAAATTGCGGTTGT 7970 28 100.0 32 ............................ TCGCCTGACTTGCGCGCTTGATTCCTCTCTCT 7910 28 100.0 33 ............................ TGTAGAGGATTTAACATTTTTCTTTTTTTTATC 7849 28 100.0 32 ............................ CTGAGAGCCGTGTTTTGCTTCCCACGCTTTTG 7789 28 100.0 32 ............................ TAGCTCCGTTGTCGTTATCGACCGCTTTCACG 7729 28 100.0 32 ............................ ACATGTTGCCGATCACTTGCTCACAACCGATG 7669 28 100.0 32 ............................ TTGAAGTAGGGACTGATTTCCGTTGCGAGTCT 7609 28 100.0 33 ............................ TGAACGGTGCGCACATGGGCTTTATTTTCTATG 7548 28 100.0 32 ............................ TTCGTCATCCATGCCAGCGCGTCTTCTGCGTA 7488 28 100.0 32 ............................ TTCTTGTTGCATTTTTACCGCTTGCATTAGCT 7428 28 100.0 32 ............................ TTGCGGCATGGCTTTCGGCTTTGGTTGATCAC 7368 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTGGTGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCAT # Right flank : TATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGTTTCTTTCCGGTAAAAATCATCAAAATTTAAGCTCAATGTTCTGAAAACTAATCTTTTAGTGTTCAGTCTGCACAATTTGGCTTTTGAGTTTAAGTCTGATGCTGATTCGGTAGAAAGTGTTGGAAGTTCAGCAGTTTCAAAGTTGCTGAAAACTAACAAGCCTCGATGCTTCAACGTTGTTGGATGTTCCACACTGCAAGTTTGGTTTCACAAAAGCGGCATCATTGCTGTGAGCGTGCTTTCTTTGTCGTCGATTCGGTAAGTGGCCAACTTAACCTTGATCGTTTTGAGTTTTGGCTGCCAACTTCACAGCTTTTGGCGTTGGGCGTGTGTTTGTTTGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 224530-227801 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIPL01000089.1 Vibrio cholerae strain A12JL4W81 NODE_144_length_264091_cov_42.203960, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 224530 28 100.0 32 ............................ TCTAAAGGCCAAATCATCGTCACAGCAACTGA 224590 28 100.0 32 ............................ TAGAGCCCCTGACAAAGTGGCATCAAACAAAA 224650 28 100.0 32 ............................ GCAACAGACGGGCGAAAGATAACCCACGGCGA 224710 28 100.0 33 ............................ CGCAAGGAGAAAGAGCGCAAGGGATGCGCTCCG 224771 28 100.0 32 ............................ TTTAGCAGCTCCCACGCGCCGCCCTCTGGATC 224831 28 100.0 32 ............................ GCAATATCTGCTTCTACTCGCTTTTTGTAAGC 224891 28 100.0 32 ............................ ATGTGGCGGCGGTCATGGCAATAGTGCTAATG 224951 28 100.0 32 ............................ CAAGCCAGCGTTGCCAGCCTGATGGCTCAACG 225011 28 100.0 32 ............................ TTTAGGGAAGTAATATTGCAAACCGCCTGTAT 225071 28 100.0 32 ............................ TGATGTGGGGGAATCGAGTATTTGATTCGATG 225131 28 100.0 33 ............................ CGCTGGCGTATTCCCCGCCGCAATATCTGCTTC 225192 28 100.0 32 ............................ CTACAGCGATGAGGTGATTCATGCGGGCATTG 225252 28 100.0 32 ............................ AATGGCGCAACTCACCAAGATGGTGATAGACA 225312 28 100.0 32 ............................ AATAAGCCTGCTTGAGCCTGAATTGTTCATAC 225372 28 100.0 32 ............................ TGTTAGGCTTTCGGGTTGTACTGCTCTAGGTA 225432 28 100.0 32 ............................ GTCATAAATCTTCCTTAGTTGCTTTTGGGTGG 225492 28 100.0 32 ............................ GCAATAGAGGATTGCAAGCAATGGAACAAAAC 225552 28 100.0 32 ............................ TTCTGCACCTGGCACGAAGGCTTTAAGCCCTT 225612 28 100.0 32 ............................ AATCGAATCCTTGGCGCGTTGTAAGCGATCAG 225672 28 100.0 32 ............................ AGAAGACTACACGCTTATTGAGCCAGTGGGTG 225732 28 100.0 32 ............................ GTTTAGGGTGTAGATCTCTACCGACTCGTGCA 225792 28 100.0 32 ............................ TCCTGCGAAATCAGACCGCTGGCCTCAGCTTC 225852 28 100.0 32 ............................ GATTTGGGATACCAAGAAAATCCCGTGGAAAC 225912 28 100.0 32 ............................ ATCAGCACATCATTGGCTTCATCGCTGTAGGC 225972 28 100.0 32 ............................ AATCAGCCGCAGGGCGCGGCTGTTGGAAAGGT 226032 28 100.0 32 ............................ ACAATGTGGAATCACCTGCTTCAACCGCATCC 226092 28 100.0 32 ............................ GAATACCGCAATGCCATCGTTCGCCGCAATGG 226152 28 100.0 32 ............................ TTCGGTACCGACGAAGCAATGGCCTTGATTAA 226212 28 100.0 32 ............................ ACAGATACGGAAGAAGAACTGTTGATGTACGA 226272 28 100.0 33 ............................ TTTTATATAAGGATTGTTAATTATGGTTTCTGA 226333 28 100.0 33 ............................ CATCACGCCGCCGTGGGTGTGAGTTGCGAGTGT 226394 28 100.0 32 ............................ GTAACGAATGCAGACGATAGCAGCCGATAAAT 226454 28 100.0 32 ............................ ACCATGGGGGGAGGCGAAGCCGCCACGAAATA 226514 28 100.0 32 ............................ GTGATAATGCGGTGCTGATGGTGGTCGCGCCA 226574 28 100.0 32 ............................ GTTGAGAACTGCATCTTCAAAAGCTTCACCAC 226634 28 100.0 32 ............................ CTTGCGCGGCGAAGTAGTCATTTAACGGGTTA 226694 28 100.0 32 ............................ TGCAGAAATCGAGCTGTTCGAGTTCCCTTGGC 226754 28 100.0 32 ............................ CAGCGCGAGTCATGACCAATCAAGAACTGGTT 226814 28 100.0 32 ............................ GACCATAAGTTATCTGACCTGTTGGGCGGCTT 226874 28 100.0 32 ............................ ATGAGAGGATATTGGCCGCAAGCGTAGCCAAG 226934 28 100.0 32 ............................ TTGACGATTTATACAGCTTCCATCTGAAAAAA 226994 28 100.0 32 ............................ AGCTCATTTCTAAGCTTCTTGCTGTGTAAGTC 227054 28 100.0 32 ............................ AGTGGCCCGAAATGGATTTGCTGCTCAAACGT 227114 28 100.0 32 ............................ AACACGATTGGCACGATCAAAGGGTGGTGGGA 227174 28 100.0 32 ............................ ATTACTACACTGCATCAAAAGAACGTGCATCG 227234 28 100.0 32 ............................ TAATCCAGAGGGAGTGCCATTTGATAACCGCG 227294 28 96.4 32 ...........C................ GCAGGGAGAAGTGCAACAAAGGCGCAAAGCGC 227354 28 96.4 32 ...........C................ CGAACTAAAAAGTGTAGGCTCAATAGTCGGTA 227414 28 96.4 32 ...........C................ ACCAGGCCCGAACCGCGAGATCGATTTCATCC 227474 28 96.4 32 ...........C................ ATCCTGCGCTGACCTTTGCCGACTTCTTCGGT 227534 28 96.4 32 ...........C................ AAGCATGATAAGTAAAATGAGAACTGGGATAC 227594 28 96.4 32 ...........C................ TCAAAGAGCAACAGGTATTTGTTTTGTCGGCT 227654 28 96.4 32 ...........C................ TGCTGCCATAGTTAACCCGCCTTTTTCTTCAT 227714 28 96.4 32 ...........C................ AGCCGTTGACGCCGTCCACATCTGCTACATGC 227774 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGTTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCACCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //