Array 1 220941-219656 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWSY01000001.1 [Clostridium] symbiosum strain LT0011 NODE_1_length_3271684_cov_105.736103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 220940 32 100.0 34 ................................ GCAAATAGCCATTTGTTGTCCCTGGTGGTTGATT 220874 32 100.0 36 ................................ ATGGCTGGCCTTTATGGCTTCTGCACTGCTGGGGTT 220806 32 100.0 33 ................................ CTTCACACTATTTTCATTATATCTTGACAAATG 220741 32 100.0 36 ................................ TAGATACTTGTCCAGTTCCCTTATCCTTCTCCTGAT 220673 32 100.0 35 ................................ TCTGTGAAAAGATGTATATATTTAGGCGGCATATC 220606 32 100.0 35 ................................ CTGCTTCCCTGAAGTAATAACAGGGTTTGCACACT 220539 32 100.0 34 ................................ ATTATCGCCCAGATTGACATTTAAAGGAGAAAGA 220473 32 100.0 33 ................................ GTCCAGTATTGCGAGATGAGAGAAGAGATAAAG 220408 32 100.0 33 ................................ CTGCGGGTATTCCGGGCTGGGGGATGGCTGACC 220343 32 100.0 34 ................................ TATTTGCAGGTCAATTTCCCGCTGTTGGTTGTTG 220277 32 100.0 34 ................................ GCTTTCAGATAGTTGTCAAGCTAAAAGTTTAATT 220211 32 100.0 33 ................................ GCACATCACCGATGCCATGTAACGGTTCGGCAA 220146 32 100.0 33 ................................ ATGAAGACGCATGGAATGAGGTGGTTGTTGCGT 220081 32 100.0 34 ................................ CCAGAGCAACTATTCCGGCGGTTAATCCGGCCGC 220015 32 100.0 34 ................................ AAAATGGCAAAGGGGCCAAAGGCGGGGAAGTCCA 219949 32 100.0 33 ................................ AAGCTGGAACAGTGCGGCTGCTGCTTCGGCTTC 219884 32 100.0 32 ................................ CCACCGCAGGAGTGACAAAAGTAAGCATCGAG 219820 32 100.0 36 ................................ GGTGGCGTGGCGGTCATTGCGATCGTCGCGGAGCTG 219752 32 100.0 33 ................................ CTTTCAAGTAAAAATCTGTGATTTAGATAAAGC 219687 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.4 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTAGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTAATTGGCGCAAAGAGATGTGGATTCCGGGGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAAGGGGCTCAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGGCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAGAATCATGGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2224621-2225189 **** Predicted by CRISPRDetect 2.4 *** >NZ_VWSY01000001.1 [Clostridium] symbiosum strain LT0011 NODE_1_length_3271684_cov_105.736103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2224621 33 100.0 33 ................................. AGCAATGTCCAAGCCTTTTCTTATTCCTTCGTG 2224687 33 100.0 35 ................................. TGGATTACGTAACCGTAATACAGAAAAACTTGACA 2224755 33 100.0 33 ................................. CGGAGGGGAGGCGAGGAATATCAGCGAATTTGA 2224821 33 100.0 34 ................................. AGACAGAGGCGCTACAACCGGAAACAGACAATAA 2224888 33 100.0 34 ................................. TTCTGCTTACAAAAAAAGCGGTTGAGGGGCTTTT 2224955 33 100.0 34 ................................. CGTTTGTTTTAATGTTGTCTACAATCAATGCAAT 2225022 33 100.0 35 ................................. CAGCTACCTCCAGGGTCATCGGCAGCCGGCCAATC 2225090 33 100.0 34 ................................. CTGTTCTCGCCGTAAGCCTGCAGCATCCGTTCGA 2225157 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 9 33 100.0 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGAAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAATAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTAACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TTTTATAGGTGGAATAACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATTTGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCTCCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAGAGCAGAACATACATTTCCCAATAATAATATAACTAACACATAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATCATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAGATAATCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAACTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //