Array 1 1759-194 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBKT01000021.1 Bifidobacterium pseudolongum subsp. globosum strain 2103B Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1758 36 100.0 36 .................................... AACGGCAGTTGGTCGGGCATCAAACTCGATGTCATC 1686 36 100.0 37 .................................... CTGACCCGGATAGATCAGGTTCGGGTTGGCGATGCCG 1613 36 100.0 37 .................................... AACGCGAATGGTGGTACGGGGGCGCCGGGCAGCCAGA 1540 36 100.0 35 .................................... CGAGGCTTCCTCTTTGGGCCGGCCATGGCCGCCGA 1469 36 97.2 35 .G.................................. CTCACCAACGGCGGCATGTTCCACATCGAACGCCA 1398 36 100.0 38 .................................... ATCTGGATGCGCACGCGCGTCACGTTCGGCGACGGCGG 1324 36 100.0 38 .................................... TTGTAGGGGCCACTCACGTGGGTCTTGGTCTTCTGAAC 1250 36 100.0 37 .................................... GAGATCAACGGCGTGGCGCTGTCACGCACGTGGGCGT 1177 36 100.0 39 .................................... AACATCCGCGCTGCAGGAACTAGCCGAGGAACGCGCCAG 1102 36 100.0 36 .................................... ATGGCGTCGTAGGCTCGATAGTTGCGTATGATGCGT 1030 36 100.0 39 .................................... ACGCAGTTGCAGTTGCCGGCCGGCGTGTACCGGTTCGGT 955 36 100.0 38 .................................... GACCTGCTCTCGGGAGGGCCGGTGACCGTCAGCGCCAG 881 36 100.0 38 .................................... CTGCTTGACGGCACCTATCACCCCGTCAAAGAAAACAG 807 36 100.0 35 .................................... GCGCACACCGACCACGGGGCATTGAGGATCGACCA 736 36 100.0 36 .................................... GGCATCACCTACCCCACCGACTCGGATCTCGTGAGG 664 36 97.2 36 .................................A.. GGGTCCAGATAGGTGCCGTAGAGCATGTTTTTGAAC 592 36 100.0 35 .................................... CCGTCGGTGTATGGGTCGGCGTTCGCATGCCCCAC 521 36 97.2 36 ............C....................... CACGCGTTCACCCCGCCCACGCGCAAGTTCGTGCGC 449 36 100.0 40 .................................... ACGTGCCCCATCAAGTCACCAGTTTGATCGAATCGGGGAC 373 36 100.0 35 .................................... TTCAGCGAGGACGGCATCACGGTGCACCCCGAATC 302 36 100.0 37 .................................... GTGTTCGCGAAGACCGTGGACACCGAGATCCCGGCGA 229 36 77.8 0 ................T.......AC..GCG..AA. | ========== ====== ====== ====== ==================================== ======================================== ================== 22 36 98.6 37 ATCTCCGAAGTCTCGGCTTCGGAGCTTCATTGAGGA # Left flank : CTTCAACGACGTGCGTTTGAAGAACTTCATCGAGATGCGGCACTGGGACTCACTGCCGATCGAACGCGCGGAACTGCTCACACAGATCGTGAGCAACCTGTTCTACGATGTGGAGCGCCGAAACAGCCTCGAATCATACTTCAGCGGACTGACCGGCGAAGACGTGCACGCCGCAAAGGCCGTGCTGCAGGCGCGCGGGGGAGAGGCGAAGCCCTACGACCAGCCGATGGACTACTGGGCCGAAGTGCTGGGCGTGGGGGATGCGCTTGCCGATGTGCCGGGCGACGCGAAGTGGCCGGAGGTGCGGCAGGGGTAGAGGAATACTATCTCTGTGCGAGAGCTGTATCATGCAGCATAAAGCAGGGAATCTCTCGCATCAATACTTTGTAAGGATTTGTTGAGCTTGTGTAGAGAAATCAGTCGTTTGTATCACGTCAATATGTCTACCTCTCGCAAAAGCGCTTATCAGGCTATGTGTATCAGTCTGTATTATGGCTACT # Right flank : ATTAGGCATCGGACACCTGAACTTATAGTCAGTTGATCGTCTTAGAAATCTTGGCTCTGACTTTTCTGGCTCTTCTCAGGTTAGTGTGTAAGGATGTCTTTGAGTTGGCTGCTGTGGATGAGGCATCGTTGGATGTAGCTGGTGGTGTTGGCGAAGCCCATGGCGTTGCCGCGCAGGGTCTCGAGCCTGCCGTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTCCGAAGTCTCGGCTTCGGAGCTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 97624-97894 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBKT01000008.1 Bifidobacterium pseudolongum subsp. globosum strain 2103B Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 97624 26 100.0 35 .......................... GAATACCATCAGAATTTCTGATGGTATTGCCGGGG 97685 26 100.0 35 .......................... CGAATTAGCCAATGTCAATACTATTGACATTGCGG 97746 26 100.0 36 .......................... AGGGTGTCATTACTGTTGACACCCTTGGCGGCCCGT 97808 26 100.0 35 .......................... CCGGCGGTGTGGTGAACCTCGATAGTATCGAGGGT 97869 26 88.5 0 ....C..G.....A............ | ========== ====== ====== ====== ========================== ==================================== ================== 5 26 97.7 36 TCGATCCACGCGCGCGAGGGCTAAGC # Left flank : TCGAACCGAAGGCAAACGTTTGCCGCTTCCGTCGTTTCTGACACATTCATACACCGCCCGCGCGGGGTGCGGGGACGGTGGGGGAGGGCTCTAGAACCCCACGGGCCACAACCGTGGGATAGCAGCGCGGATCATACGTACACGCCCCGCCGCTTTTTCCCCGAACCCACACCGACGCAAAGGGTATAGCGTTTCACGATCACCTTGGGCCCGCGAGCGCCGCGCTTTTCCCTCTGACGCTTTAATGCGAACCCCTGCGCGCACAACGCCTCGGAGCCGTCTTGAGCGTTGTCGCGATATTGGAACCGGCAGGGGGCGGGCCGATTTGCGGCGCTCGCCACCCGGCCTACTATCCGCGTGCCCTCTCTTCCTCTCCCCCCGCGCAGTGGGTACCCCATCGCGCGCGAGGCGGGAACGACCTTGCAAACCTCCGTAATGCGGAGGTTCGGGCCCTGAGAGCCAAGGGCCATGCGGCAAACATCGGTAATCCCCATGTTGGT # Right flank : CCGCCACTGCAAGGGGGTGGTGAAACGTCACCCCCTTGTGTTCACACGAACAAGCTGGCCCGAGGAATCCCCGGGGGCAGGCTGGAGGCTTCCCGGACGGGGGTGGCAACATCAGAAATACTGAAGTTCGGCAGGGGTGTCGATAGTAACGACGCCCTTTTGCCGGTCCACAAGGCCCCGTACGCTCGGCAGGTGGTAACGGATCGTTACCCCCTCTGCGTTTGTGAGGCTCTGCGGGGTGCCCTAAGAATTGTTTAGGGTCTGTTTCGTGTTTGGACTGCATTCGCCCCCGACAACTTTACTAATTGTAATGTTGCCTGCGCCGCTTCATGTCGACCCTGCGCCCATGCTCAAGGAACTTGCTGGGGCGTCGCCATTTGCCTCTATCGGGCCGTGAAGAGGGGGCTCTATGGCGTGGAGGCCCTTAACAACGTGGATACTATCCACTTTGCCCCATGCGCTCCATGGGCACGGCGTGGGGTGGTGAAACGCCACCCCAT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGATCCACGCGCGCGAGGGCTAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //