Array 1 54757-53608 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZO01000002.1 Clostridioides difficile strain CD08-070 isolate CD08-070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 54756 29 100.0 36 ............................. CTTGTAGATAATGCAGAAGAAGAAGAAAAACAGATT 54691 29 100.0 37 ............................. GATGCTACCTTATTTTTATCTAATCCCCAAATAAACT 54625 29 100.0 37 ............................. TTATTTCTTAACCAGTCAAATAATCTATTTTGTCCTG 54559 29 100.0 36 ............................. ATCATAGTTTATTAACACAGGAAACGAGGTTAGTTC 54494 29 100.0 37 ............................. AACTCTTTTAAAAAAGAATATACGATTTTCAGAGAAG 54428 29 100.0 37 ............................. TATTAATTGCTTATCTATTAATTCTTTTAATTTTTCA 54362 29 100.0 36 ............................. TGAAGGGTTATAAAAAAAATAATAGCGAAAAGGGCG 54297 29 100.0 37 ............................. CACGAAAAAATCAGAAGGGGAGGGGGGTTATTTAAAA 54231 29 100.0 37 ............................. TTAAAACTTGAATTATTTCAAAAAGCTAAACATCAAG 54165 29 100.0 37 ............................. TTTAATTGCCCTTCATAGAATATTATTTCACCTTCTT 54099 29 100.0 37 ............................. TATGAGAAAGTTGAATTTAAAGGCGAAATGAACATGG 54033 29 100.0 37 ............................. TCTTTATATTGATATCCAAGAATAAGCGCACGTTCTT 53967 29 100.0 38 ............................. TTGCTTAGCGCAATAACTTTTGAAAATACTACAGGAGT 53900 29 100.0 37 ............................. TAAGATGTCCAAATGCTAAGAGAGAATTCTTAGGATA 53834 29 100.0 37 ............................. AAAAGAAGTTTTGAAAGTAAATGTGTAAATAATAATA 53768 29 100.0 38 ............................. GAAGTCAACAATTTGGCTATTGGTTAAGTACAACTAGC 53701 29 100.0 36 ............................. AAAGAAAATTGGGTTTTTGATTAAGAACTTGCGAAT 53636 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ACTATTATTATATAACTAACATCTAAGTGACATTTAAGAAAAATATGAGATTACTGATATTTTACTGATATAAAACTGAATGTTATTTAAAGAGAGCCTTGATTATATTTTTAGAAGCTTTTTATGCATATTATCTAAAATATGAGAATATCTATTCATAGTTATTTTTATATCAGTATGACCTAATTTTTTAGAGAGAATTTTTATATTAAATCCAGTTAGAAGAAGACTTATTAGAATATCCAATGTAGTAAGCACTAGCAGATATTCTTAAATTGATAAATTACTCCATTTTAATTTTATAGGTTAAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGCGTTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAAAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACTCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAGTAATTACCAGATAACATTGACTTTAGTCTTATTGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAGAATAAAACTTAATGACAAGATACTAGATATAAAAATAATTACCTTATAAATAGATTGAAATTTGTGAATATTCATACTATAATTTAGATATAAGGAGATGCTCTTATAAACTTAAAGGGTTTGTACTACTTGTACTATCAGTATTGATAATATTAAAGTATATATACCATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATGTTAAACAACACAAATATCAAAATTTAATATTGATAGAGGTATAAACATTATAAAAATAATTGAAAATAAAAATTAAGAAATATTTAATCCAACTACAATATAAATTAGAACTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5702-5075 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZO01000031.1 Clostridioides difficile strain CD08-070 isolate CD08-070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 5701 29 100.0 38 ............................. CTCAAAATTAAATAGTTGGCTATGGTTAAGGGATTGCC 5634 29 100.0 38 ............................. ATAATAGCAGATATGATGTTTAATAACGGAAGTATAAG 5567 29 100.0 38 ............................. CTGAATGAACCTAAGGTAGTTGAACAGATTGAAAAGAC 5500 29 100.0 38 ............................. TATGTCAGGACTTCTTAAACCATATTCAGCATACACTC 5433 29 100.0 37 ............................. AAATTTAATATTGCTGGAAAAGGAGAAATGGATATTG 5367 29 100.0 37 ............................. AATGCTGAACTTAAAGTAATGATGCTATTTTGGGACA 5301 29 96.6 37 ............T................ AAATTTGCAAGGCTAAATTGCCCCTTAATTAATGGTG 5235 29 100.0 37 ............................. AGTTTTTCTATATATTCAGATATTTCACTTTTATCTT 5169 29 100.0 37 ............................. GAAATATGTATAGAAGCATTGAAACAAGATAAATATT 5103 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 10 29 99.7 38 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : AGTTCATACAAACAAAGGATTATCCTCCCCATTTTAAGAAGGGAGGTGATTATGTATGGATAATTTTTTACTTAGTATATTAGCCAGTATTCTGGCTAGCTATATAGTTTACTTAATAAGTAAGTTATTTAGAAAACGTAAAAAACCACTCAAAGCTGGCACTAAGAGTGGTTGGGAACTTGATTTTAAAATAAAGTTCCATAAATTCAAATAACATCGTTTATGATGAACTCCACTCTACTGCTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTGGTGCAGATATTCAAAAATAATATATTTATAATATAATAAAATTATAGAAGTTTTGCAGTGAGCGAAATTTGTGATAAAATATGGCTTAACAATTGGAATATAATGCATTGAAGATGTGTGATAAGTATTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGTATAGATGTAAGTATTGGAAATACTCAATTTGTTTTGGG # Right flank : TTTATATTCCTCACACATATAATACAATTAATTCAGTTTTAATTGTCATTATGCTCAATATTTAGTTTTTCTGTATCTTATAAACCAAGAATATAATTGATAGAGACACCAAAAATTTTAGCAAATATTATTAACTCATCATCTCTTATTGGTCTTTCATCAGACTCTATTATATTCATAACACTTGTATTTATATTTGTTTTTTCAAACAATTATTTTTGTGACCTATTCATATTTTCCCTAATATATTTAATCACTTGACTTATGTTCATACATGATCACCTCGAAAAATTTCTATTGTAGAGTTGTAAAAAATTTAGCTTTAAAATATAGAATATCAAGTGATTTTAAGTAAGAATTGTAACAATTAAATAAGTATAAGACAAGTTTATGAGTTCATATTTTATAACAAGGGGTGATGTTATGAAAATACTACAACAATTTAAACCATACAAATATGATAAAGAAAAAAATATAGAATATGATGAAAAAATTATAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7205-9869 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZO01000022.1 Clostridioides difficile strain CD08-070 isolate CD08-070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7205 30 100.0 36 .............................. ATGTTTAAGTCAGATGGCTCACCAAATCAAATGTTT 7271 30 100.0 36 .............................. TTTATTGTAGCTGTTATAACTTCTTTATTTGTATTA 7337 30 100.0 36 .............................. TGATTTATTAGAGGAAAATAGAGAATTAAATATTAA 7403 30 100.0 36 .............................. TATTGCTCTAAATTTAGTAGACCAAGTTCAATTTCT 7469 30 100.0 36 .............................. TTAAATGCTTTATAAAGTATTAATTCATTTTGTAAC 7535 30 100.0 36 .............................. TATTAATCCTTCTATTGGAAAATATCGTCTTCAAGA 7601 30 100.0 36 .............................. TATAGTTTTGTAGCTCTTTCAAGTTCATCTGCATTT 7667 30 100.0 36 .............................. ATATATCTAAATGGATTATTATATCTAACTCCATCT 7733 30 100.0 36 .............................. ATATATCTAAATGGATTATTATATCTAACTCCATCT 7799 30 100.0 35 .............................. ATTTTATAATGGTAAAAAAGAGTTTTACATAGCTG 7864 30 100.0 36 .............................. TTTTGAAGTTTAGTTATATCTGGGTCACCAGTCTGT 7930 30 100.0 35 .............................. CAGCATCTAAACCTTCTCTTCTTGCTTCCTCTGAA 7995 30 100.0 36 .............................. TTAAAATTCAATTTAGTAAATGAAGTTAATTCTGGA 8061 30 100.0 36 .............................. TTTTCTTTTGCAGCACTTCCTAGAACATCTCCATCA 8127 30 100.0 34 .............................. TCAAATCTAACTGATGTTCTTTTATTATCAAAAG 8191 30 100.0 36 .............................. TCTTTAGCTTTTTCTATTTCAGCAATTATCTCTACT 8257 30 100.0 36 .............................. GGATTATCCAATCTTTAATCTTATTACCATACCATT 8323 30 100.0 36 .............................. TATCTCTTAAAGCACTATCTAATTCAACAATAGTTG 8389 30 100.0 36 .............................. TATTGAACTTAGCATCTAATTTAGTATTTTTAGTAG 8455 30 100.0 37 .............................. TAGAATAAAAATTACTTGCAGAATAAAAAATGTCTTC 8522 30 100.0 36 .............................. TAGAAAAAAGTGTACATTGACAACTGAATATCCCCT 8588 30 100.0 36 .............................. ACACTTATTTTGATTTTATTTATTTTAATTTTTTAT 8654 30 100.0 36 .............................. TCCATCTACTTTTTTACTTTTAGCTTTTTCTTTAGT 8720 30 100.0 36 .............................. AGTCTGAAGATGAGCGAATGTGCTATATCTGTAATA 8786 30 100.0 37 .............................. TTAAATATAATAAATCGTAATGTACAAAAATAACTTA 8853 30 100.0 36 .............................. TTTCTTGAGTTAATTGAACCCCCATTTTTAAGCTCC 8919 30 100.0 36 .............................. TTTTCTTCTAGCTCTTTTTTCTTAGCCATTTTACCA 8985 30 100.0 36 .............................. ATGTTTATACATGAGTTTAGTGATAGGTTCTTGGTC 9051 30 100.0 36 .............................. AAGGCAAGTGATTTGCTATTTAGAATAGGTGTAAAC 9117 30 100.0 35 .............................. ATTTCTTTTTGTGAAGTGTTAAGAGATTGCTCTTC 9182 30 100.0 36 .............................. ACAGTAGCTATTCCAATTTCTTCTGCTTGTGGCATA 9248 30 100.0 36 .............................. TCAAAGATGCCCCTCTAGCTGGTTTTTGGGTATCTA 9314 30 100.0 36 .............................. TGTGTTGAGTCGTGATATTGACTTTTTCGGAAACGG 9380 30 100.0 35 .............................. TTGTAGTCCTTCCATTTCCATCACACAAAAAGCAT 9445 30 100.0 35 .............................. TCTATGTTATGTACATGATTACCTTGTTTGAGTAG 9510 30 100.0 36 .............................. TAAGAGTCTCTTTGTATATCAATTTCTCTAGTAGAT 9576 30 100.0 36 .............................. TAAATTATTAGTTTTAAAATTTAAAGGGGGAAAAAA 9642 30 100.0 36 .............................. GCTAACTTAATTACTTGTTCCACATTTGCTAATACC 9708 30 100.0 36 .............................. AAATATTCAATATAGTTTTTAAATACACTTTCCATT 9774 30 100.0 36 .............................. TCATTAGTACTTGTTATTCCAGTAAAAGCTACTTTG 9840 30 93.3 0 ...............A........C..... | ========== ====== ====== ====== ============================== ===================================== ================== 41 30 99.8 36 GTTAAACAGTAACATGAGATGTATTTAAAT # Left flank : CAGATTTAAAAGAGTATACAATCTTTTTAAATACTATAGTTAAAGATGAATCTGGAAATATGATTGTAGGAAGTGATGTATGGTATGAATATATATCACTACTAAAAAATGATAATGTTGAGTATTCTGAAAAGAGGGTGAAAATGTCTGAAATTATGGAAAAACTAGATTATTTTACGTATAAAGTTCAGAAATTTGATAATTCATTTAATGATTTAGTTGGAGATATTTTTTATATTGATGATGGAAGTAAGTATTTTACAGAGGGAAAGTTTGATAGAAGTAAATTTAATCAAAATGAATTTCTATAATGTATTTAGATTATATAGAGAATATTTATCCCAAGTTAATTAATTAGAATTAGTTTAAAGCTATTGAAATATAGATATTTTATATCTTATATATATTTTCTAGGATTAGCTGGGATAAAAAATCTGTATATTAGTGTTTTCAGTGTATTTAAGGGAATTATATTTTTAAGAAGTACTGATTTTAAAGTG # Right flank : TTACTCTATCATAAAATTTTAATATATTAAACAAACTAATATGTGATATACTTATGTATAAATAACAAAATAAATAGGTGATGTTATGAAAATTACAGGAACTTTGATAAATTACTATTTCCATTGTAAAAGACAATGCTGGTTGCTTGGTAATAGAATAAATTTGGAAGAAAATAGTGAAGATGTAAAAATAGGTAGACTTCTTCATGAACTAAAAGAAGAAAAATCAAAATATAAAGAAATTGCAATTGAAAATATAAAAATAGACAAATTAACAAGAGAATATTTAGTAGAGGTTAAAAAGTCTGATGCTGATATAGAAGCTGTTAAGTGGCAAGTTCTTTTATATTTAAAAAAGTTAAAAGAAAAGGGAATTGTAAGAAAAGGGAAAATTGAATTTATAGAAAAAAATAAAACTAATAAAAAAATAGTCTTTGTAGATTTGAGTGAAGTATCTGAAGAACAGCTTATATCTATAGAAAGAGAAATTGTTAATTTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 119931-120904 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZO01000022.1 Clostridioides difficile strain CD08-070 isolate CD08-070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 119931 29 100.0 37 ............................. TTAAGCTTAAAGATTATGGTTTTCAAGTTTTAGTTAA 119997 29 100.0 36 ............................. TTAAGAAATGCAGATAATAGGATACCTTTCAACTGG 120062 29 100.0 38 ............................. TGGAAACTAATATTTATATAAAACTTGTAAATATACAG 120129 29 100.0 35 ............................. CGAGAAATTGAGCTAATTTTACTATTATCAGCATT 120193 29 100.0 36 ............................. AAAGGTGTGAAAAGAGATGAGTTAAATCAAAGTGAA 120258 29 100.0 36 ............................. GAAACGAAGCTAGTTATTGTGATTATACAAGTTTCC 120323 29 100.0 36 ............................. TTAATAGCACATCTTCGCTTTCAAGTTTCTCTATCA 120388 29 100.0 37 ............................. TATATATTGGATGTCAATGTCAAGAATACAAAATTTA 120454 29 100.0 37 ............................. ATAGGAAAATAGAGATAGGTTCACAATCTAATGATAG 120520 29 100.0 38 ............................. ATTTTTTCTTTTAGTTTTTTAGGAACTGGTAATCCACA 120587 29 100.0 36 ............................. TTCTGAATCATATGAAAACAAAATCTTATTTGTATT 120652 29 96.6 35 ...........................G. GAAATTATTAATGTTATTTCTACTCTTGCAGTTGC 120716 29 93.1 46 .......................A....G CATAGTCTATTGAACATTTATTAAGAGATAACTTTCGTTTTATATA 120791 29 79.3 55 ...........G...TA.T.A..T..... GTTTCACTATTGGACAACGGAAGTTTTTTCAGTGAGTAAAGATTGAATCACTTTA 120875 29 72.4 0 TA.....C....T..T...A...A...T. | A [120894] ========== ====== ====== ====== ============================= ======================================================= ================== 15 29 96.1 38 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : GACAGTCAGTTTTTTGTTTATCTGAATAATATTTTACTTAAATTATTAGAGGTCTTTTTGTACATTTCTTCTAAAACATAAGAATATATATTCATAGTTAGTTTTAAATCTGTATGACAAAATCTTTCAGAAACTATTTTCATATTAGTTCCTACCAAATGTAACAAACTAGCACCTGTATATCTTAAATTATGTATTTTCATTTGTCATTAGGTATTTTTAATACATTATATAACTATGATTTTATTATTTGAAATCTAAGTTATAAATACTATTGATGATAGAGTAATTGTATACAAAAATATATAATATATTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAAATATGTTTAAGCATTGAAATGTAAGGTATTGATAGTGATTGATAAACATTATCATTTGCACTACTGTTCGCTCACTGCAAATTTAAGAGAATTGCATATGTGTGAGTATTGGAAATTCTACGTTTATTTTAGG # Right flank : TATTATCTTATTTCTATTTGTAACTTTTTTAAGTATGTATTGTCCAGTTGTAATTTGTTTTTATTATTTTAAACTTTCAATTCCAAAATTATCTAATATAATTGAATTAACTTACTTTCTTTTTTTATTTTACCTCCTTGTTCTCTAATTAATTTATACATTTTATTTATATTTAAGAATACATACTCTAATTTGATTACATAAAATAAAATGTTTTTCTACTATAAATTAAACTCTTTAAAAAATATGACTCAACTACTTTAATTTTTATTCTAATGATACATTAATTCTAGACATAATAAAACTCTCCTAGCTAGATGATTTTACATGTTTTAACTATCTCCTAAAAAAGTATAGTTTGATAAAAAGAGCATTTTTATATAAGCACCATACTTTTATTGTGGAAGATAATTATTTTATGAGGTATTGAAAACTTACATAAAATCTGTGGATAAAAACTCATACTTTCATTTTACTGACATACATCTAAACATAATAAT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 167776-170707 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZO01000022.1 Clostridioides difficile strain CD08-070 isolate CD08-070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 167776 29 100.0 38 ............................. TAGACTGATATTCATCCATACTGATGATTCCTAAAGAA 167843 29 100.0 35 ............................. AGGGTTGAGTTCTGGCGTATTAAGAGGTGAGGAGC 167907 29 100.0 37 ............................. TGGAGAAGGTCTTGGATTAGCACCAATAGGTCATAGA 167973 29 100.0 36 ............................. AGTGAAAGCAAGGCTATTCCTAATTCTTGGAGTGGA 168038 29 100.0 38 ............................. AAATAAGTTTTGAAGCAGAATTTACACACAATAAACTA 168105 29 100.0 37 ............................. AAATAAAAGAATTAGGATTTACTCAACAATCAATTAA 168171 29 100.0 37 ............................. ACCAATTTTTGTATGCTATATCACAATCTTTACTCTC 168237 29 100.0 37 ............................. TCTTCCACTTTAGGTTTATATGCTGACCTATACTTTG 168303 29 100.0 37 ............................. CTGCATTATCTACAAGTGGGTGGTTTTTTAAATTAGT 168369 29 100.0 36 ............................. AAGAAAGACAAACATGTTCAAAGTCATGTTCAAACA 168434 29 100.0 37 ............................. CGGCAAATAAGAGCAGTATATTCATCAGATTTAAATA 168500 29 100.0 37 ............................. GAGGTTGATGCTTATAGATTAAGTAAATTAGCTACTG 168566 29 100.0 37 ............................. GTTAGTGTATGTCCTGGTACTAACGCTACCTTCATTA 168632 29 100.0 37 ............................. TCATTATAACCCCAACCAACTACAGTTGCAGGGATTT 168698 29 100.0 39 ............................. TATAGCTAAATCTATTGTGGATTTAATTATTTCTGCCTC 168766 29 100.0 37 ............................. AACTCTTTTGCTATTCGTTTCACTACATTATTATCAT 168832 29 100.0 37 ............................. AAAAGTAATGAGAGTTTAGAAGATAGAAGGTTTAGGA 168898 29 100.0 38 ............................. TTATTTTCTCTGATAATTCTACTAAGGTATTATTTAAA 168965 29 100.0 35 ............................. ATATGACAGCACAAGGAACACCTACAGCACAAGCA 169029 29 100.0 36 ............................. AAAAACTAAAACAGTCTATGGCTATATGAAAATCTC 169094 29 100.0 37 ............................. AAGAAAATAAGACGTTCAAATCAAAAAAGACGAAGTA 169160 29 100.0 37 ............................. TCTATTCCAACATAAAGATACAAAGTAGTTTCTTTTT 169226 29 100.0 38 ............................. AAACAAATCATCACACAAGCAATTATTATGCTTACTAA 169293 29 100.0 36 ............................. GTCGTAAAACTTAAAGATGAAACAAAAGGAATGATT 169358 29 100.0 37 ............................. AGATTCGACGGAGAACTTTTATCTAATAAAGAAAAAC 169424 29 100.0 37 ............................. ATCACCTGGTGATATACCCCTCTATCATCTCCTGCTA 169490 29 100.0 37 ............................. TGGTTTGTTGCAACATATGTGTTCCTTCAACATATCC 169556 29 100.0 38 ............................. GAATCTGGAGCAGGTTTATAAGTTTCTGGATAGCTAGA 169623 29 100.0 36 ............................. AAAAAATATAAAAGAGCTAAGCACATGAAGGATAAT 169688 29 100.0 38 ............................. TATGTTAAATTTGTTGATGAATTATATCCCAATTTTTA 169755 29 100.0 36 ............................. CACCTCTCACTACTATAGAATCTTTATCAACGCTAA 169820 29 100.0 37 ............................. GGAAGTATAATTTTTACTTTATCTCCATACTCAAAAA 169886 29 100.0 37 ............................. TGTATTGAGGGGTCGAAAATAAGTGTGTTCAAACTTA 169952 29 100.0 37 ............................. TTTGTAAATGTAACAGTTTTATCTAACATTTTACCGC 170018 29 100.0 36 ............................. GTATTTAGATATTGCAAGTAAATTACCTTCGGTATC 170083 29 100.0 38 ............................. TTTCATCTAATACCTCCTTGTTTTATCAAGAGGGTTAA 170150 29 100.0 36 ............................. ATTAATTCAGAACTTGCACAGTTGTATATAGAACTT 170215 29 100.0 38 ............................. ATATTCATATACTACATATTCTTTTCCTTCATCATTAA 170282 29 100.0 37 ............................. AGGTCTAAAATTTGTATTTAGACATACTAAGTTATTT 170348 29 100.0 37 ............................. TCACAAAAACAAGGAATACTTAAGTTAGCATCAATGA 170414 29 100.0 37 ............................. TAGAGTATTGTTCTACAATTATATTTCCAACTGAACT 170480 29 100.0 37 ............................. TGAAGTTTTCTTTTAAATTATCATCCTGTATAGCCTT 170546 29 100.0 37 ............................. ATACAGGAACAGGAGTCGGAACAGAAAAAAACGCCTC 170612 29 96.6 37 A............................ GTTGTATTACCTCTGTAATTATTTTTTCCAAAATTAC 170678 29 82.8 0 .C.............A......AT.T... | G [170699] ========== ====== ====== ====== ============================= ======================================= ================== 45 29 99.5 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CTACAATTTATAGAGTGGAGTTCATACAAAAGATAATCCTCCCAACGTATAGAAGGGAGGTGAATATGTATGGATAATTTTTTACAAGGTATATTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAGAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTGCAGATATTCAAAAATAATATTTTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAATAAAATAGGGCTTAAGCATTGAAATATAAGGCGTTGAAGATGTATGATAAGTGTTATCATTTGCACCACTGCTCGCTCACTGCAAATTTTAGAGTGTTGCATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : GAAGTTACAATGAGTACAAGAATGTTTCTATTTATTGTAACTTTTTTTATTACAAACTTAAATTTATAGTATATTATAAAAATCATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAAACGATTAATAATCTATAAAAATGGAAAAAACATCCAATATCCTACAAAAATAGATTTTTTTATTACAATTACAAGTTTTTATTGCATCTATTTAGCAAAAGTATTATTATGCAAGTAAGATAATTATCAAAGACAATTCTGAATAGTCTGATTTAAAAGATACAATTAAAGGATATAAATAGGAATAATTTATAAATATTACAGAAGATTTATAACTAAAATTACGAACGTAAGTTTGTTATATGGGGTAGTTGTGTGGATGAATCAAATAAATTAATATTAGAATTGAATAATATTTTCTGTGAATTAGAGAGTATTAATAAATATAAGTTTAATGAATATAAAGAAATTGTTAAAAACTTACACAACAAAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 127877-125755 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZO01000024.1 Clostridioides difficile strain CD08-070 isolate CD08-070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 127876 29 100.0 39 ............................. CAATATATTCTAGCAGGAGCAGATTTAGGAGCTTTACAA 127808 29 100.0 35 ............................. ATTCTTTATACAGAGAAACACGATACTATTTACAG 127744 29 100.0 36 ............................. ATATCTTTGTACTCTTGATTTTCCAGCTTTGATATA 127679 29 100.0 34 ............................. AATTGCATAATATTAGAGAGTTTAATACCATCAA 127616 29 100.0 37 ............................. GATGGTAAAATGGGAGATACTTTCTTTGGATTAACAG TG [127613] 127548 29 100.0 34 ............................. TTGCTTATACTTACAACTTTTTCTGCTGTAGCAT 127485 29 100.0 36 ............................. AAAACTGTTTCTACTTTTTTAGTCCCAAGTAATTCC 127420 29 100.0 37 ............................. CGCATTTTTGCTTTTATATTGCTTCTTCTATCTTCTA 127354 29 100.0 38 ............................. TCTAAAATATCCTCACAACTCCTGTAATTGTATTTTCT 127287 29 100.0 37 ............................. TGGTTTACTAAGAAAATAACGGATTTTTAAGAGAAAA 127221 29 100.0 37 ............................. TTTGATGAAAAAGAAGAATATAAGAGGGATGTGGCAA 127155 29 100.0 36 ............................. TAACTCCAAACTCCGTAAGTCTTGCCATTTCTCCAA 127090 29 100.0 36 ............................. GAGTATCAAGAGACCAGGGAAAGGCAGGTAAAGCAG 127025 29 100.0 36 ............................. AATGGTAAAATGAAGGCATAATAAATTTCAATATAG 126960 29 100.0 39 ............................. AGAGACAGTTTAAAACTAAATCAGAAGAAAAGTCTTATA 126892 29 100.0 37 ............................. TTTAAAGCACCCTTAAAATCTGGTTGGGCATGTTCTC 126826 29 100.0 37 ............................. TTGGTAGACAACCTGGTACTTGGCTTAAGATTGATAA 126760 29 100.0 36 ............................. CATGTGATAGAGATAATATACAATATGATAGAGAAA 126695 29 100.0 35 ............................. GCATAAAATACCTTCAAAAATAGCTTCTACTGACA 126631 29 100.0 37 ............................. CGAAATAATGTTTTGTTTTCGATGGGTATATATACGG 126565 29 100.0 35 ............................. TAGCTTTTGCGACTGGAAGATACGCAGATAATTTA 126501 29 100.0 36 ............................. ATTGTAAGCTCTTTAATTTCTAAATTAGCTCCGATT 126436 29 100.0 36 ............................. TTAAGTAGAGCAATGTATCATGGTTATGTGAAAAGT 126371 29 100.0 36 ............................. CTAGTAAATTTTGCTAAAAGGCACTATTATTGTAGT 126306 29 100.0 35 ............................. CAGTTGACACAATGAGTAAAAGCGAAGCAGAGCAA 126242 29 100.0 37 ............................. TTATGTTATAGGAGCAGGTTGCAAGAAGTATAAGCAA A [126241] 126175 29 100.0 37 ............................. CATAGATTTTGGAGATTTAAGGGAAGGCAATATGTGT 126109 29 100.0 36 ............................. GGGTTTGCATCTTTATTAGATAATTTTATTAATAGA 126044 29 100.0 36 ............................. TAAATATAGAATAAAGCATTTTAGTTTACAATGCAA 125979 29 100.0 37 ............................. ACCTAAAAAATCAATGCAGCTTATCTTATATGCAATG 125913 29 100.0 36 ............................. ATTAAGGAATAGTAATTACAGTGGACTGGAGTTAGT 125848 29 100.0 36 ............................. ACGTTTCGCAAGGGATTTTTTAAAGCGAATGGATAA 125783 29 82.8 0 ................A.CA...C....T | ========== ====== ====== ====== ============================= ======================================= ================== 33 29 99.5 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGAGAGGATTCAATCTATATTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGCTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGACATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGTTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATGATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAGAAAGCACAATCAAAGCACATGGCTTTATAAGTAAAGAATACTGGCAAAATAACCATAATGCTGTTAAAAATGAGTATATACCTATATCAGATACATTTGTATATGATATTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGTTTTATAGGAGCTTTATTTATAAAGCCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTGAAAAATATAAAAGTCTAAGTTTAGCAGTATACAAAGATAATAAAAAAGCAGTTATTTTTTATAATAAAAAAGGTTTTAATGTAGTAAAAGGGCAATTAAATGAAGACTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //