Array 1 388163-389967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZY010000002.1 Listeria booriae strain FSL L7-0030 NODE_2_length_473780_cov_43.348107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 388163 30 100.0 36 .............................. AAAACAGGTGGTAATGTTACTAAATTTACTTCTAAC 388229 30 100.0 34 .............................. GAATTATTATCTTTTACATACACACAATGGCAAT 388293 30 100.0 36 .............................. GTTTTTGCCACATTTATGTTAGCAGAATCTACAGCA 388359 30 100.0 35 .............................. GTCATATTCGAAGGCAAAGGGTATATCGACTTTCA 388424 30 100.0 35 .............................. CTGATTGATTTTGAAACACAAGTAAAGGAAATTAA 388489 30 100.0 36 .............................. AGCTACGCAAGATGGGTGTTCATAACACGATTATTC 388555 30 100.0 37 .............................. AACACAAGACCAAACCAAATCAAACTTCGTGAAATTT 388622 30 100.0 36 .............................. GAATGGGACAGATATATGGAAATCGCCCAAGAACAC 388688 30 100.0 36 .............................. GCGCTCTCCGAACTACATCACCGTGCTGGAATTCGG 388754 30 100.0 37 .............................. AAATCCAATGATGGTAAAGAATAGTGCGCCTAAGTAC 388821 30 100.0 35 .............................. ACTTTTTTAGCCCCTAATTTACGAAGTTCGTCAAT 388886 30 100.0 36 .............................. AAATCCAGCCCGAAATAAGATGGCAGATGGGACAGC 388952 30 100.0 35 .............................. ACCCATATATCCTTCTTGTGCTTTTCGTAGTAAGC 389017 30 100.0 36 .............................. GTTCTTCTCCGGTCATTAGCATTTGAAAACGTCGAA 389083 30 100.0 36 .............................. AGGGCTAGCTCGGACACTTTGCCCTTTTGGCGTAAA 389149 30 100.0 36 .............................. CACGACTGGTCCGCATCATTGAGAGGCGTTCGTGGG 389215 30 100.0 34 .............................. CGAGCAATTCATGGGCTGTTAGCACCGCGTATTG 389279 30 100.0 36 .............................. GTCATATATTCAGTCTGATGATAATGGGAAAGTCGT 389345 30 100.0 35 .............................. TATGTTTTGATTGGGAATATATTAATCATTGCGGC 389410 30 100.0 37 .............................. ATACTTTTGTTCCAAATCTGGAAACGGGAAGGGCGTT 389477 30 100.0 36 .............................. TCATAAACACTGCAGTGTATTCCTCAAATGTGCGTC 389543 30 96.7 36 ...............G.............. ATAGCAATAGCACATCCTCATTGGTTAGGTGATACT 389609 30 100.0 37 .............................. ACGTCACGCAAAAAGGATTTTGTAGATAGGGTTGCGT 389676 30 100.0 36 .............................. CATTTGGATAACGGCATTACCCTCAGTTATTTGTAA 389742 30 100.0 34 .............................. TTGTGATCTGTAAGAGTTTTAAATGATTCTCCGC 389806 30 96.7 36 .............C................ GGCTATCACGCACCCACATAACTTTTTGTGAACGAA 389872 30 96.7 37 .................A............ ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATT 389939 29 83.3 0 ..C..............A..-...C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 28 30 99.0 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGCGGGGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TTAGATTGCTCACAAATGCAGTGTTTTTATCCATTTTTTACAGAATAAATTATCATTTAACAGCCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCCGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAAGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAGGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 329431-331165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZY010000003.1 Listeria booriae strain FSL L7-0030 NODE_3_length_368184_cov_42.171283, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 329431 30 100.0 36 .............................. TATTTTATTCCCAGCAATTAGAACATTTTCTTTGGA 329497 30 100.0 35 .............................. AAATTATCGTATAATTCTACTCCAGAAAATTCACT 329562 30 100.0 36 .............................. TTATCTACGCCGTCTTTGTCGGTCATTTTTGATAAT 329628 30 100.0 36 .............................. AAACGTAATCCCAATTATGGTTAAATAACGCACGGG 329694 30 100.0 36 .............................. TTTGGATGCACATTTTTGTAGATTATTCGTGTGCTT 329760 30 100.0 36 .............................. AGACCCATAAACGCCATTGCTTTGTCTTTGTTAGTC 329826 30 100.0 36 .............................. AGTTTTCTATCATGATTTAAACCGTGAATCAAGATA 329892 30 100.0 35 .............................. GTATGCCTTTGGTTGTGTATTTGTTACCTCCCCAA 329957 30 100.0 36 .............................. TCAACAATGAGGCTGGATTTTTCGGGTGCTGCTTCC 330023 30 100.0 34 .............................. CGGAAACATGAATGTCTGGACGGGACACGTGAGC 330087 30 100.0 36 .............................. AGGATATATAGCGCAAATCAATTTTGATAGCACAGG 330153 30 100.0 35 .............................. GACACATCAACAAGACATGGAAGATTGGGAATCCT 330218 30 100.0 36 .............................. GCTAGACCTCCAGCCCACGCCATAACAGCCGGAGAG 330284 30 100.0 37 .............................. TCTGTTTTCCGTCTTACTTCATCTTTTTTTAGATACT 330351 30 100.0 37 .............................. TCCGCTCGGATTAACATATAATGGTTCTCTTTCTTCG 330418 30 100.0 34 .............................. ACAGTTAAGCAAGGTATAGCCGCATTTCCACCTG 330482 30 100.0 35 .............................. CTGTACCCCCATTGCTAATACGTTTTTCCATCAGC 330547 30 100.0 34 .............................. TCACGTGTTACATACGCATTAGGGCAATTCGTAG 330611 30 100.0 34 .............................. CAACATACAATGCATCGCCTACCTGGAAAACTAA 330675 30 100.0 37 .............................. CCCGCTAGCGTCATGCTGGCAAGTGAGAACGCAACAT 330742 30 100.0 37 .............................. AAGGCAAAGTCTTATACGTCAATTTGGAATTAGACCG 330809 30 100.0 36 .............................. ATGGTTCGTGTGTACATATGCAAAAACCGTTTGCCC 330875 30 100.0 36 .............................. GCGTATATCTTCCGCTGACCCATTCTTACATGTCGT 330941 30 100.0 36 .............................. AAAGGCGAGTTGTTTACAGCGAGTTATGAAACTCTT 331007 30 100.0 35 .............................. AACAAATTTCAGTGTTGAACCAACATTCTGCCAGA 331072 30 100.0 34 .............................. CTAATAGTTCATTTTTATAACTTGAAATAACCTT 331136 30 96.7 0 .............C................ | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.9 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATTTTGATTTACGACATAGCAATGGATAATGACGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCTAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGCAAGGGGTTGGTCCTATTTTGGGGAATTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGAGGTACCT # Right flank : TTCGCCTTCCCCCTCATTTTTTACAAATCTGAATCAACTGTTTTTATCTAAAAATAAAAGATACTAATATAGTTCATATCGTGGTATACTAACCGCGAAGGGAATAAGGAGGCATTTTGTATTTTCCCTGACTATACTAAGGAAGCGGAAGGAGATAATTAGTTTGAATCACAAAACAGTAAAACTTATCACTCCTGTCATGGGACTCTCCCTACTATTCTCAACTCTAGCTCCTGTTATTCCAGTGTCTGCGAACGAAACAAATGAAAGCGCTGTAGAAGAAGTCGCAAGCCAATATGCGTTAACAGATGTAGATATAGGTATAGCCAATCAGTATATTACGCTCAATGCAACAAGTAATAATTTTAGCGTCTCCCCCTCTATTTCAAATGTCCTTTCTAGTGAAAAAGTGAACATTATTAATGCATTCGTTGCTACTGCTAATACTTTTATAAAAACTGCCAAAATGGATATATCGATGCCCATTTACGCTATTGATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 51323-50568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZY010000009.1 Listeria booriae strain FSL L7-0030 NODE_9_length_167925_cov_38.888604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 51322 30 100.0 35 .............................. ATATTAAAAGCCCAGGGATTACGAGGGAATATTGC 51257 30 100.0 36 .............................. ATGCGAAGGTATTGGAAGAATACAATACAGCCTATC 51191 30 100.0 37 .............................. ACAGAACTATTACGCCATTCACGAGCCGACATTGATT 51124 30 100.0 34 .............................. TCCCCCGAATCAGAACCCGTTCAACTAGACCTAT 51060 30 100.0 37 .............................. GCTCCTTATTGGCTTCTTCTCGTATCATGTCGAGGTA 50993 30 100.0 36 .............................. CTGTTAGAAGTTCACGTAATAGCTCGTCTTCGGTTT 50927 30 100.0 36 .............................. GCCGAAATTGCACAAGTACTTGGCAAAGTCGCAGAG 50861 30 100.0 36 .............................. TGAATCAGGTTTGAATTATGTTCCTTTTGATGGTTA 50795 30 96.7 35 ......................G....... ACAGGAAGGTATGAAGTGGTTTGCAACGCAGTTTA 50730 30 93.3 36 .................A..A......... AAAAAAAGAAACTCGAAAAAGAAGTCGAAGAAGCGA 50664 30 96.7 37 ..A........................... TCAGAACGGGATGAAATTCTTGATTTCTTGAACATGG 50597 30 83.3 0 ....................G..CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 97.5 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGACGCGGATATTGTATTAATTGCTGTCGGATTTGCCGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTTTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTACAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGGCTACGGAAATATATACCCAATAAACTACGGATTCGTTCCGGGAGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAGCCCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCGTTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAACG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //