Array 1 319481-317098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINO010000001.1 Azospirillum picis strain IMMIB TAR-3 Ga0451089_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 319480 32 100.0 36 ................................ ACGCTGTCCTTGATCGACTTCTGAATTTCGCGGCAG 319412 32 100.0 34 ................................ AGAGCGAAGATCATCGCCGTGACGCGGGGGCCGG 319346 32 100.0 35 ................................ GGCATCATCGACGCGGATCGGGCGGCCGCGATCCT 319279 32 100.0 33 ................................ GATGCGGCGGCAGGCGATGTCGAAGTAGCGGCG 319214 32 100.0 37 ................................ ACGCCCGGCGAGGTCATCTCCGCCACGATCACCCAGG 319145 32 100.0 37 ................................ CACAACCGCTCGCAGCACGCACGAGCGCGGACACCCC 319076 32 100.0 35 ................................ GCTGGCGGTGGGAGCTGACACCTGTTCAGGACAGG 319009 32 100.0 34 ................................ ATCGAAGTGGACTTGGATGAGCTGAAGCGCGGCG 318943 32 100.0 35 ................................ CAGGCGCTTGATGATGTCGTTCTCCGCCGCCTCGG 318876 32 100.0 37 ................................ ATGCCACGCTGATGCTCGATGTCTGCGCAGGTGACGC 318807 32 100.0 35 ................................ CTCCGAGGACCCTTTATCCACTGCGCGGCGTATGG 318740 32 100.0 35 ................................ ATCTGCTCGGTGGTCATCGGCATGTGGGTCTCCAG 318673 32 100.0 34 ................................ ACGTCCGTCATCGGCAGCATCTGGAATGCCGTGA 318607 32 100.0 37 ................................ GGCACGACACGGTCGACGGCGTTCCGCAGCAAATCGG 318538 32 100.0 36 ................................ GGTCAGCAGGCCAAGACGGATGACGCGATCCAGGGG 318470 32 100.0 34 ................................ ATCGCTGGCTGGTCGACCGCGCCGTCGCCGATGT 318404 32 100.0 36 ................................ CGGCGCTTCCGCCTCCGATCAGATGGAATTGTTCGT 318336 32 100.0 35 ................................ AATGGACCTGATGCGCCTTCCTGCCCATCCAGACC 318269 32 100.0 34 ................................ CGCTCCCTCCCGGCTTCGCGCTGGACGACGTCGT 318203 32 100.0 39 ................................ TTGGCCATGGCGCCTATGAGGCCTATCGGCGCGGCGAGC 318132 32 100.0 34 ................................ TTGGCCTCGCCCTTGGCGGAGCGGTTGCGGAAGC 318066 32 100.0 36 ................................ TGCAGGTCGGCGTTGGCGAGGGCGAGCGCGCGGACC 317998 32 100.0 35 ................................ AACCGCCTGCTGGGCGTCAACACCGCGCCCCGCAG 317931 32 100.0 34 ................................ AGCAGGACTGCCACGTCCACGCTGTCCGTGAACT 317865 32 100.0 37 ................................ GGACAACCGGTGACCGACTGGGAGGAGCTGCGTGAGG 317796 32 100.0 34 ................................ GGGAACAGGGTGGCCGCCGCAGCCTTGGCCCCGG 317730 32 100.0 34 ................................ TCAACGCCTGGCACACGGCCGGCGCGCTCGTTTC 317664 32 100.0 34 ................................ CGGGCCGAGCTGCGAACGGACCGGGGAGGCCAGC 317598 32 100.0 33 ................................ TGCCCACGCCTGCAATGGAGGCCCCCAAGCAGG 317533 32 100.0 34 ................................ GCCTACGTGGCCAGCCTGGACGAAGAGGACGAGA 317467 32 100.0 35 ................................ AGCAGTCGGGATTGGTGGGGAACTTTGCCTTGATC 317400 32 100.0 36 ................................ TGCTGCCGGAGGAGCGCAAGAGGTACAAGGCGGAGT 317332 32 100.0 35 ................................ AACACGAGTGGGAGAACGCTCAGCAGCGCTTCGTG 317265 32 100.0 35 ................................ GCCATGTCCACCACCGGGCAGTCGCTTGGGCTGGC 317198 32 96.9 34 ........................G....... AGCCCACCGTCCAGCGACCACAGGCGCCGCTCGT 317132 32 81.2 0 ........G.....C..A........T.CC.. | CC,A [317109,317113] ========== ====== ====== ====== ================================ ======================================= ================== 36 32 99.4 35 GTCGCTCCCCATGCGGGGGCGTGGATCGAAAC # Left flank : TGCTGGGCCATCTGGAGCGGCACAAGCGCTACCCGCGCGCGGCCCAGGCACGTCGGCAGGAGGGGGTGGCGCAGGTCCGCTTCACGATCGACCGCGAGGGCAAGGTGCTGTCGGTCCAGCTCGACCGTAGTTCCGGTTCCAGCCTGCTGGACGAGGAAACCGTCGAGATGGTCCGCCGCGCCTCGCCGCTGCCGGCCCCGCCCGAAGAGATGGCGCAGGACCGCATCGAGCTGGTTGTTCCGGTGCAGTTCTTCCTGAAATAGCCGCGGGCGCTCCGCCCGCGGTTTCCCGGGGATGTTGCGGGAGTTGCGCCGGACGGCCGGCGCGAACCCCAAGTGCACAGGAATTCCCCGGGAGGTTCGCGCGGTCCGGAAGCCATTGGAAACACTGGGTGGTGATGGACGGTTGCCTGGAACGGCGGCCTCCGAAACGATGTCGGCTGGCAGGTTCGCGCGGGCACGGTTACACTGCCAATAAAAACGGTCACTTACAGCTTGGCA # Right flank : ATCGATCCATCACCGTGCAACCCGTCGTTCCCGCTGCCGCCATCGGTGATCGTTGCTGGTGCAGGTCACTTCAGCGCCGGCTTCACCCGTTCGCCGACCCGGCGCTGGCTATCGACCGCGGCACGCAGCCGGTCGCGGGCGGCGCAGCGGCTGGTGGGGGCTGTTTTGCCCGGCCGCAGGCCGTTGAGCGCCGTGAGGAAGCTGGAGCCGGTGCGGTCCTTGGGTTCCGGCTTGCGGTGGACGGCGGGCTCGACGGTGACGGCTTCGGCGACCGGCTTCGCCACGGCCGCCGCCGTCCGTCTGCGCGCCTGATGCGCCTCCAGCCGGGAGCGGGTGACGATGCGATCGCGCAGTTCGGAGTCCAGCGTCCGGAAGATGCGCGACGCCTCGCCGAGGTCGCTTTCTCGTCCGGATTCCAGGGTGCGGTGCAATGCACTCGCCAGCAGCCGGCATTCCAGCACGCCGGGCACCCGCTCGCGTTCCACCGCACGGGCGAGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 30833-29401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINO010000026.1 Azospirillum picis strain IMMIB TAR-3 Ga0451089_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 30832 32 100.0 36 ................................ GAAATCATGAAGGGCCACGGCATCAGCGGCTTCCAG 30764 32 100.0 35 ................................ GTAAGCCACACCCTTGCGGATGCAGTCGCCGATGA 30697 32 100.0 35 ................................ CGGTACCGCCGCAGGGCGTTGAACATCCCCGCCAG 30630 32 100.0 34 ................................ ACGCCCGGCGAGGTCATCTCCGCCACGATCACCC 30564 32 100.0 35 ................................ AACAGGATGGCGAGGGACAGGATGTAGTTGGCCGG 30497 32 100.0 34 ................................ GCCTTCCTCAACACATCTTGCACGGACGACACCC 30431 32 100.0 36 ................................ CGGCAACACGGACCTGCTCGCCAAGGTGCTGGCCGG 30363 32 100.0 34 ................................ CTGTCAGTGGCGTCGCTGCTCAACACCAACTTGA 30297 32 100.0 36 ................................ AGCCAGCATCACGCGGCCCTCGCCTCAGAGCGGTCG 30229 32 100.0 34 ................................ CGCTACGGGTTCATTGGGCTGCGCACCGACACCT 30163 32 100.0 35 ................................ CAGAGCGTGGTGTCGGATATCCGCGCCCGCGCCCG 30096 32 100.0 34 ................................ GCGGTTATGTGCTCGCCCATCTCGTCGGCCAATT 30030 32 100.0 34 ................................ ATCTCCTCCACCGTGAGCGCGAGCTGCTCGACCG 29964 32 100.0 35 ................................ CACATCGTTGTCGTGATTGCGGCAGAGGTGATGAT 29897 32 100.0 35 ................................ CGGGACACGTTTGATTGGTCGACGCCTCCGCTGCC 29830 32 100.0 34 ................................ GTCTATGTGTGGATCCGGTACGGCTGGAAAGCCG 29764 32 100.0 34 ................................ TAGCGCGGCAAGGACAGGTCGAACCCGAACCACT 29698 32 100.0 35 ................................ GGCCGATGAAAGGGGCAGCCGCCGTGCACTGGCTC 29631 32 100.0 35 ................................ TTCTTGCGGGGAACGCCGCCCTTGGCCTTCGAAAA 29564 32 100.0 34 ................................ CACAGCGCGGCCGGATCGGCGCAGACCTTCAGCG 29498 32 100.0 34 ................................ GACATCGTGTTTGACGACGGCAGTGTTTCCCCCC 29432 32 96.9 0 ..........................T..... | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.9 35 GTCGCCTCCTACGCGGAGGCGTGGATCGAAAC # Left flank : CCTGGACGGCTATCCGCCCTTCCTTTGGAAATGACCGACCATGCTGATGCTGATCACCTATGACGTGAACACACAGGACGCCGCGGGCCGCCGCCGCTTGCGCCGGATCGCGAAGGCGTGCCAGGATTTCGGCCAGCGCGTCCAATTTTCCGTGTTCGAATGCGAGGTCGATCCGGCGCAATGGGCCGCGCTCCGTGCCCGGCTGATCAAGGAGATCGACCAGGGCACCGACAGCCTGCGCTTCTACCATCTCGGTGCCAATGCGGGCCGCCGCATCGAGCATGTCGGCGTCAAGCCCGCACTGGACCTTGGCGGGACCCTGGTCTTCTGACCTGCGAACCCGAAGCTCACAGGAAATCCCCGGGAGGTTCGCACCTGAACGCTATCAACGGGTTGGCGTCGGTGGCATGCTGAAAGCCGCCCGGCGGACTGCTGTGCAACAGGTGGTTCGCGTTTGATCCGGGATTGTGGGTTCCTGAACAAGTAGATATTGACTGGCT # Right flank : GTGCCAGTGCGCTTGCCCCCATCGGCACCCACCGTTGTGGGCAACCGCAGCCTGGCTCCAGCATTGCCAAGGTGCACCATCCTTCCGCCTGGACATCCAGCCGGTTCACCACACAGCGGATCGGCGATCGATACCTGAGTATGGGTTCCTGCCTGTCGGCGACTTCGGCACTCTACCGGCCACAGCGATGTTGGCAGGAGTTCGGTATGGAACTGGCCCTTTCCGAGACGCCGCCGCGGCTTCCTTCGGCACTGGCGGGGCAGGCATCCGTTTCGTGGATGCCGGAAGACGGGATGCCGGAAGAGGCCAACCGGCTGTCGGCCGCCGTCGACCGGCTGTTGCGGGTCGCCAGCGACATGCTCGCCTCGGACAACCAGTCCATCGCAGACTGCCTGTCGTTGGCCCTGGCCCGGCTGCAACGACCCGGCGGCGACCCCGGCACCGACGCCAAAGCACCGGAGGAGGCCGGCCGGAAAACCGGTCTCGCGGCGTGGCAGGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCTACGCGGAGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 64145-65272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINO010000020.1 Azospirillum picis strain IMMIB TAR-3 Ga0451089_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64145 29 100.0 32 ............................. CCCCTCGCCGTCGTGCGCAAACTGGACCTCGA 64206 29 100.0 32 ............................. CGGTGCACCGCGGACTGCCGGCACCTCGAACG 64267 29 100.0 32 ............................. ATCCGTCCTGGCTGGACGGTAAGCTCACCGAG 64328 29 100.0 32 ............................. CATCCCCGCACACGCAAAAGGTTTTGCCCGCG 64389 29 100.0 32 ............................. ATCCAGGGCGCGCTGACGGATTTCGATCTGTC 64450 29 100.0 32 ............................. TATGCTCGCCCGCCGGCCCTCGAAACCCTGCG 64511 29 100.0 32 ............................. CGCGAACATGTCCAGCAGGAAAGACCGCATCG 64572 29 100.0 32 ............................. ATGGGCTTGTTCGCGGTGTAGAAATCGCGGTC 64633 29 100.0 32 ............................. TTGTCATTTGCGGCATGATGTCCTTTGACAAA 64694 29 100.0 32 ............................. TCGGCGACGCTGATTTGCAGCGGCGTTTCCGC 64755 29 100.0 32 ............................. ACCCCGGCGGCTGGGCAGTGGGACTACTATCT 64816 29 100.0 32 ............................. CACCATCGGCCGCGTGTCGGAGGCTTTGGCTG 64877 29 100.0 32 ............................. CAGATAGCCGCAGCAATCAGGCATCCGGAAAA 64938 29 100.0 32 ............................. TGAGCTAGGCTGCCGCATCCGCCTGCGCGAGC 64999 29 100.0 32 ............................. CGCGCCATCAAACCCAACCGTCTCATACCGAC 65060 29 100.0 32 ............................. TGCTGCTGGACCTGGAGTGCCTGCAGGCGGGC 65121 29 86.2 32 ....C.........T..........G..T ATGGCGGACGCCTTGGACTCCTCGTACCGCCC 65182 29 100.0 32 ............................. TACGCGATGCTGCTCGCCAAGGGACCGTGCCC 65243 28 86.2 0 .............TT.......-.A.... | TT [65269] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.5 32 GGTTGCCCCGCACAGGCGGGGATAGACCC # Left flank : CGAGGGAAGCCCTGACGCCGCCACCGGCGGCCCGGCGCATCCGGCGCTGGTGATGGCGATGCTGGCGACCGGCCGCCTTCCCCTCTCCGCCATGCCGAAGACCTCCGCTCCGTCGAGGCCGGAGATGCCGGCGCCCTGGGGCCGGCTGTTCCGCCGCTCCTGACCCGCGCCGTGCCGCTGCCGCCAGCGCTGCTGACACGCTGCTGCCAGGACGGCGGCTTGCGGATGCCTCACGCTTGCCTAGGGGTGCGCGCCGGTTTCCGCAGGGTTGGGGACTGGCCGTGAGGACGCGCCTTTGCGTGTTTTCCCGACTTTTCAAAGAGATAATTGCGGGTAAACGGCTGGCGCGGATAACTGCTTGAGGGCATGATTGTGCCCGACAGCGGGACCGACGGTGACCTTGTTCCCGGCGCTGCCCCATCCCCCACGCCAGAAAACGGCCGGGTCTGGGTGGCTGTTTCTTTGACAAAGTGAACAGAGTCAGTGCTTTACAAGGCAGA # Right flank : CATCAAACTGTGCCCGCCCTGACCCCCGCACGCCCCCACCTCGTCCAGATTACCTCTTCCGCTTTGGTTGAAACGTGCTATCCATCCATCGTCTTGCGGTAACCGGATGATGGCGCAGGCTTCAATGGGCGGGAAACGGCGAGAACCCTGGGGAAAATCGGGAGAGCTGCCGGGCGACTTCCATCATCTCGCGCATCATTGCGCCGATGTCGCCGCCTGTTTCGAGGCCATCACGGCGCTTCCCACCATTCGCGCGCGCCTGGAGGCCGCCGCCGGCGCTCCGCTGTCGGCGCGTTGCCTCGCGCGGCTGACCGCCCTCGTCTTCCTCCACGACATCGGCAAGCTGCATCCTGGCTTCCAGGCCAAGGGCTGGCTGCCGGCCGAGCGGCCGGCGCTGCTGCGCGGGCATGTCGCCGAGGGGCTGGCTCTCCTGATGAGGCTATCGTCGCAGGGGGCCGGCGACGCAGCCCGCGTCCGGCTTCAGCTCGGCCTGCCCGACC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTGCCCCGCACAGGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 74988-77841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINO010000020.1 Azospirillum picis strain IMMIB TAR-3 Ga0451089_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 74988 29 100.0 32 ............................. TGTCGGTTTCTGCGTCCCAAGCGCCGCCATGA 75049 29 96.6 32 ............................T CTTGAGCTTCCCATTGTCTTCCTCCAACCCAC 75110 29 100.0 32 ............................. CTGCGCCTCGTAGCCGTCGGGCAGGGCGATGC 75171 29 100.0 32 ............................. CAGTCGGCGACCTCCTGACCGGCCCGCCCGGC 75232 29 100.0 32 ............................. TCGTCGTCAGAGAGAGCCCGGTCCCTTGGCTC 75293 29 100.0 32 ............................. TACGCGCGGGACTTCAGCGACGCTTCGGAGGC 75354 29 100.0 32 ............................. GGCGAAAATATGCCGGTGGCTATCAAGGAAGC 75415 29 96.6 32 ............................T GTCGGCGACGTATGGGGCGTGGACCAACTCAA 75476 29 100.0 32 ............................. GTCGGCAATCCGCCGACCGACGCGGAATGGCC 75537 29 100.0 32 ............................. TCGGGGGACACGATGACGACGTAGTCCTGAGC 75598 29 100.0 32 ............................. TCCTGGCCCAGCCGCAACATCCGCTGCTTCCC 75659 29 100.0 32 ............................. TGGAGTGCGTCAAGGCCGCCCTTGGTCATCCC 75720 29 100.0 32 ............................. CCGGGCGACGTGGTAGCCAGAGCCGCAAAGGT 75781 29 100.0 32 ............................. CAGCTTGGCGTGGCTGCCGGCATGATCGCCGG 75842 29 100.0 32 ............................. TGACGGACGCGCTGTTGACGCTGGTGCGCCAG 75903 29 100.0 32 ............................. TGATCACACCGTGACCACGGTCACGCTGCGGC 75964 29 96.6 32 ...................A......... CACTTGCGGCTCAAGCCGGCCGTAGTGCCGTC 76025 29 100.0 32 ............................. CAGGCTGGCGGCAGCCGGCAGGACCAGAGCGC 76086 29 100.0 32 ............................. CGCTCACCCCTGAGTAGAACAAAATAGGAACA 76147 29 100.0 32 ............................. ATGGCGCGGTAGACCTCGCTGACCTTGAAGCG 76208 29 100.0 32 ............................. GTGACGATAAATATTTTGATATCTGTGTAGAC 76269 29 100.0 32 ............................. TGGAATTCAAAACGAGTCCGATCAACTTGAAA 76330 29 100.0 32 ............................. AGTCAGACCCAGCACTCCAAGAGGCAAAGAAA 76391 29 100.0 32 ............................. CAGCCGGAGAGCGTCAAAGCGATTGCCCGTCA 76452 29 100.0 32 ............................. CGATCGGCCACGCCCGCGCATTCCTCCACCAC 76513 29 100.0 32 ............................. GAGAAGTACCAGCGAAAGCACCGGCATCATCA 76574 29 100.0 32 ............................. TTCTTAGAACGCTTCGTATCCACGCGGATTAG 76635 29 100.0 32 ............................. CTCATCCGGATACACACACGATGCCGAACCGC 76696 29 100.0 32 ............................. GAATGGTTCAAGGGCACCCTGTCAGAAGCGAA 76757 29 100.0 32 ............................. AACGCCAAAGCCCGCGTGAAGTCCTTCATCGA 76818 29 100.0 32 ............................. AAGCTGGCGGGTGACATGGCGCAGGCTGGCGT 76879 29 100.0 32 ............................. GTTATCGGGTGCCGATGCTGGCGACAGGTCAG 76940 29 100.0 32 ............................. TTAATCCAATCAATGTTGAAATGTTGAGTGGC 77001 29 100.0 32 ............................. GACGCGGTCGTGATCGATCAGATCCGCCACGC 77062 29 100.0 32 ............................. CTCCCTTTCATCGACCGCACCGTCTGGCCTGA 77123 29 100.0 32 ............................. CAGTCCGGATGCGTGGGCCGCGCGCCAGGGCC 77184 29 100.0 32 ............................. GCGCTCGACCTGACCGAAGGCACGGTCAAGGT 77245 29 100.0 32 ............................. ACAGCGCCACCGGCACGGAGGGCGTTGAAGGC 77306 29 96.6 32 ....T........................ GGGACGGCGCAGTGGACCAAGCGGCACATGCT 77367 29 96.6 32 .A........................... GCCAAGGTGGTGGCGATGCGCCCCCTGCGTTC 77428 29 79.3 50 ............T.......C.GG..AT. GCATATGGCGATAATCGCCCTCTCCTGGGACGGGAGAGGGAGCCATATGC C [77453] 77508 29 82.8 32 .A.AG..GT.................... TGGGTTGTCGTCTCCCCGACTGCCCTGACGAT 77569 29 96.6 32 ..........T.................. TTCCGGCAAGTCTCTTCGGTCAGTTTCCGGGC 77630 29 96.6 32 ..................C.......... CTCGCCGGCTTGATGATATGGGAAGCCGAGCC 77691 29 89.7 32 .C......T.......T............ CGGCGACCTGCTGTTCCCGAAACAGCCGCGCT 77752 29 86.2 31 ..............A.T........T..T TGCCACGGCGCGTGCCACGGCGAATGCTATG 77812 29 89.7 0 .........................GGT. | T [77814] ========== ====== ====== ====== ============================= ================================================== ================== 47 29 98.0 32 GGTTCCCCCGCACATGCGGGGATAGACCC # Left flank : ACCGCATCAAGACGCTGCTGCGACTGTCGGGGACGGATGGCGATGGCGGTCCCGACGGCGGCCCCGACGGCGACGGCATCGGGGATGGCGGCAGCGATGGCAGTAGGAGTGGCAGCATGTCTGGCAGCAGCCGGGAGGCGGGCTGATGCCGATGGTGGTCGTCGTCACCCGTGACGTCGAAGACCGCTACCGCGGCTTTCTCGGATCGGTGATGCTCGAACTCGCCCCCGGAGTCTACGCCCACCCACGCATGAGCGCGGGCGTGCGCGGGCGGATTTGGTCTGTGCTGGCCGACTGGTACGGGTCTTTGAACCGCGGCGCCATCATGATGACCTGGGCGGACCGCAGCGCCGACGGCGGCCTTGGCCTCGCCAGCCTCGGCAACCCGCCCAAGGACATCGTGGCCCATGACGCTTTTCTTCTCGTCCGCCGCCCCTTACGGGGCCAGTGGCGGCAGGTTCTTTGACAAAGTGAATGAAGTCAGTATCTTACGTGGCAGA # Right flank : CCGCCCAGGACGGCCCATGGTTCATGCCCGCCGGTTCCGCCCGACGGTGCATGGACGCAATGGGTGGTGCGACAGTTGCTCCCGCCTTCCTCCTCCTCTGGATGGGGAAGGGACCACCGCCGGCTTTCCGGACAGGCATTCACACCCGTCCACCCGGCGGTGCCGGGGGGCTTTCCCAAGCCGATGCCTGCCCTAGGCGGTGGCACCCGCCGGGGAGGCCGACCGTCCGGGACGCCGGGACGAGCCAGCCGTCTTGGTCACGACGTGCCATCGCCGGTCCCTGCTATCTTCGGCCTTGCGGCATGGTCGGCCGATGCCGTGGGGACCGTGGGGGGTGGCAGGGGCCGAGCCGGGCTCGGATCGGCTGCGTGGGATCCATCCCCCCTCCCATGCGGATCGCGGCAGCCGCGCCGGGACCATGCAACAGCAACTTGCCTCGACGGCTCTTCAGGGTGACGGATGTGCGGGACGGACGAATGAAGCGGACCCTTCGGGCCGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACATGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //