Array 1 867691-870675 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017686.1 Candidatus Methanomethylophilus alvus strain Mx-05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 867691 36 100.0 26 .................................... CCACGTTAGGAAGGCTCTGCCTATCG 867753 36 97.2 27 .........G.......................... TGCGGAGTCCGTTGCCTTTGTTATTGA 867816 36 100.0 26 .................................... AAACGGTAGCCCAGGAAGGCTGGCCA 867878 36 100.0 28 .................................... GACGGAAGTGATAGGGTAACCGCACCTC 867942 36 100.0 26 .................................... GATGCATCCGCAATGTGTGCCTGCTC 868004 36 100.0 27 .................................... GTACCTTGACCGCAAAAAGTGAACCGA 868067 36 100.0 25 .................................... TAACATGACAGGAAATCCACCCGAT 868128 36 100.0 26 .................................... CCTCGGCGGCAGATGTGGAGACAGAA 868190 36 100.0 27 .................................... ACATCAAGCCCCTCCAGTCATCCGTCC 868253 36 100.0 25 .................................... ATTAAAAGGGGCAGTGCCGAACCGA 868314 36 100.0 27 .................................... CCACTTCACAGCCAAAAGCGTATCTTT 868377 36 97.2 28 ...............G.................... CAACCAAATATGGCCCGTTGTTGTTTGC 868441 36 97.2 28 ...............G.................... CAACCAAATATGGCCCGTTGTTGTTTGC 868505 36 100.0 27 .................................... ACTTATGACGACATTTTTAGGGCATAC 868568 36 100.0 27 .................................... CCCTGCCGCCTGAATATCTTTGCACCT 868631 36 100.0 26 .................................... GCCGGAGGCGTGGCGGGATGGTTCCT 868693 36 100.0 25 .................................... GTTTCGCCCTCTCTCGGTTCATCAA 868754 36 100.0 26 .................................... TCGCCTTGTCTCGAGGCGGTCCTTGT 868816 36 100.0 26 .................................... CTTCAGATCTTCAGGATCATCCTCAA 868878 36 100.0 27 .................................... GGTGACGCAGCTGACCGCCGAACGCGA 868941 36 100.0 26 .................................... TCTCTCCTTCATCTGGCCTGTCCGTT 869003 36 100.0 27 .................................... GAACGCCCGGAGGTCGAAGGCCGCAAG 869066 36 100.0 28 .................................... TGTGCGGCTCGTCGCTTTCCCCGTGGTA 869130 36 100.0 26 .................................... TACCCCTTCCTCCGTACGTAGTCTTT 869192 36 100.0 26 .................................... CACAGCCGACTTCATCAGGAAGAGAC 869254 36 100.0 27 .................................... CCACGAAAGCCTTACGCTCCGCTTTGA 869317 36 100.0 26 .................................... ATGCGCTCCGCGATCAACTCCATCGA 869379 36 100.0 26 .................................... CAGGCGGACATGGAAAGCGCGATAGC 869441 36 100.0 27 .................................... ACGCTGAAGATAGACGACGTGAGCTTT 869504 36 100.0 29 .................................... TAACCTTCCGTAAGTAACACGTTTATATC 869569 36 100.0 27 .................................... CGATCATCGCAGACGAGGTAGATTCAT 869632 36 97.2 26 .................................A.. AGTGTCTGTTCACGTGTGGTATTCTT 869694 36 100.0 26 .................................... CCGGTCTGCGTCCTTGGCGAAGCTCT 869756 36 100.0 27 .................................... AAGAAGGCCGTGGTGGTCACCGCCACT 869819 36 100.0 25 .................................... GCACCACGTGGGCGACCCTCATCAG 869880 36 100.0 25 .................................... AGACGTTGAATCTCTGGCGGTTGCT 869941 36 100.0 27 .................................... CAGGTCGAACTTGAGAACGGAAGACTT 870004 36 100.0 26 .................................... CTGCAGCGCACTGTTCCCAATTTTAA 870066 36 100.0 26 .................................... CGCCCGAAGAAGCCCAGGAATTCTAC 870128 36 100.0 27 .................................... GTTCACGGCACCGTGGGGAATATCGTT 870191 36 100.0 26 .................................... TCCGGTCTTGGAGTAGTGAGCCACTT 870253 36 100.0 28 .................................... GGGAGTTCGACCAGTTCATAACCTGGAA 870317 36 100.0 26 .................................... GGAGCAGTATTAGACTTAATCGTCTG 870379 36 100.0 26 .................................... GGCGCGGCCCGCAGCTTCCTGACCGA 870441 36 97.2 39 ...................................T GAGTTTTAGACGGGAGTTCGACCAGTTCATAACCTGGAA 870516 36 100.0 26 .................................... GGAGCAGTATTAGACTTAATCGTCTG 870578 36 100.0 26 .................................... GGCGCGGCCCGCAGCTTCCTGACCGA 870640 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 48 36 99.7 27 ATCTACACTAGTAGAAATTCTGAATGAGTTTTAGAC # Left flank : ATTCGCCCCGAGTCCGTACTCTTCACGGACCCTCTCATCCTCCAGAAGGCGATCGAGTCTCCTCACGGAAAGACCGGTCATCTCCACCGAGTTCGCGACCAATGCGATCGTTTCGGACGCCACCGAGTTGCCCTGTCTCCTCTTCAGATCGTCCAGGAATCCGTCCAATCCCGTGTCCGAGAACACGGATTCCACCAGGACCTTGTTGCCGACGGTCATGGTGAGGTTGTTGTTCGGCTTCGGCATCCTGGCATGTATCCTGCTCATCCTGCGCGACAATCCATCACTTGTCCCGCCAAACATCCCAGGTCCCGGACCGTAACTTTAATCCGAATGATTCCGATGTGGAAGACAGCCTTTCGGCCTGTTTGTGTTTGGCGACTTAAACGAATCGAAAGGCCGCTTTTATTCTATCGCCAGCAGACCGTATCGTGCAGGGCGTCAGCCCCTGCACCATATCAAAAATTCACTTGATAACTGTCACACTCGGGTCTTAATCA # Right flank : CCGAAATTCTGCGCGTGTAAGTAACTCAACCCTTGGGAGTTGCGAGACATCTCAGATCGCATACCTCGATGCCCAAGACGGGTTCATTGGGTACTTCCACTCCGAACATTCCGAAGATGTTCCTGCAGTTCTTGGATATCTCCGAAAGAGCGGACGAAGAACCGTAACTCAGACAGTTGATCGTGTTCAGGTACCCCAGAGTCTGACCGACGGACATCTCCCGTTTGCCGGATTCCCTTATCTCAGCGCACAGTTCGCATTTGAGGATCAGTGAAACGAACTTTATCAGCGAACGTCCGATCATCGTGTATTTGTCGGGAGTACGGTGCCTCCTGTCGTCCGATTTGCTGAAATCGAACGCCTGTTCGGTAAGTCTCCTTGCGTCATATGCCGTCATAACCGTCGACCAGTCCAGATCCGATGAGGATAACATGACGAACACTCCCGCGCGGTTCTCAGCGAAGCTTACGGAATTCTGCTTCTCCTTGACGATCACCTTC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACACTAGTAGAAATTCTGAATGAGTTTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 872579-873366 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017686.1 Candidatus Methanomethylophilus alvus strain Mx-05 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 872579 36 100.0 26 .................................... ACATATAATCAATGGCGGATGTCATA 872641 36 100.0 27 .................................... ATCGTCCGCATCGGCATCCATCAATCA 872704 36 100.0 26 .................................... GAAATGGCAGGGAAGCGGACGGCACC 872766 36 100.0 27 .................................... GGGCGGTGAACACGCAGTGGGCGCTAT 872829 36 100.0 27 .................................... GGGCGGTGAACACGCAGTGGGCGCTAT 872892 36 100.0 26 .................................... CAATGCAGGCTCTCCAACCAGTCCTT 872954 36 100.0 25 .................................... ATCCGCGTCGAGAAGGTGGGTGCGT 873015 36 100.0 27 .................................... GTATGGTGTCAATAACATCCCCCAGGT 873078 36 100.0 28 .................................... TATGGAGACTCGGATTTAGTCTCGCGAT 873142 36 100.0 27 .................................... CGGATTATGGGTCGGCAGAATGAGGGT 873205 36 100.0 27 .................................... AACATGTAACACAATGCCCAAGTTGGA 873268 36 100.0 27 .................................... TTACAGGAGGCAGATAAATGCGTATTC 873331 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 13 36 100.0 27 ATCTACACTAGTAGAAATTCTGAATGAGTTTTAGAC # Left flank : ATGGTCTTCCCCGAATTGCCGAATGCCCTCATGAGGTCCTCGCCGAGGGACATCCTCAGCTGCACTTCGTGCAGCAGGTATGTCGCCCCGTACTCCTTTGACGACACACCTTTGAGAATCGCGATCTCCTTCTCTTTCGCGATTTTTCTGCGGTTCTCTGCAGATTTTTCGGGAATCTTGGGAAGCAGCTCCTTGGTGTCGGGATCCACCCTGCCCAAGTAGGTGGAAACGGTCTTTTTCTTACCGTTTTCCATAGTAGAGGTTACCTCATAAGCATAGAATCTGTCCCCTCTTTTGACGATCGTGCGTTTGATTCCGTCTCCATCCCTCGGTCTGACCATGTTATTACCTAACATAAACTGTATGTAAGTAATGGTATATAACACCTCTTACCGTACCCTAGCCAGCATATGAAAAATTGATCAGAAAACAGGATTGCGATTACTTAGCACGCGCAGAATTTGGGTTTTAGACTGGACACGGTCCAACACGGTCCAACC # Right flank : CCCGATAGTTCGTACAAGGCCCATTTTAATCGGTTTAACGCGTTAGATCAATGTTATATATCATAAATAAACGTTTTTTTCATCATATATATACAGATTCGGACATCGTGCTGAAAAGAAGACGGAGGTTTGTCAAACGATCAGCAGATCGCTCTCATCGTGGACCGCATGACCCATCCTGATTACCTCCGAGGATGCAGAAAGGTTCATTATCAAAATACTGTCTGCTTCCGAAAACTTCGGCATGAATTCATTCTCTATGTCCGCCATTATATTTTTTAACACACGTGATGAATTATCTATTTCATATACGGACATCTGCACCCTGTTGCCAAACCTCAGTATGTATTTCATAAATTTTGTACGCAGCTTGGTATCTGATATGTCATAGCTTATGAGTATCATGTTTTCAGCATCTGGAAATAAGGCATATCCTGTGCACACATATCTTTCATGAACAAACGGTAATATTTCTGAAAATAGAGAAATATATCCGTCTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACACTAGTAGAAATTCTGAATGAGTTTTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //