Array 1 20030-18331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWAE01000093.1 Shigella boydii strain 1177_SBOY 507_114141_3701372_374_,197+,164+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20029 28 100.0 32 ............................ CGGGGTTTCGCGGCAAGTATGCACTGGACGGC 19969 28 100.0 32 ............................ TTGATAGGGCCGACACGACCGTCGACGCGAAC 19909 28 100.0 32 ............................ AGTGCAGCGCTCCGCAGCTAGGGCACGTCGCA 19849 28 100.0 32 ............................ ATGTCGGCGATGCCAACGAAAAGGCCGCAGAG 19789 28 100.0 33 ............................ TTGGTTCTCTTGATGAGGAAGTCATGCGCTTTA 19728 28 100.0 32 ............................ TTGCGCCTAACCACCTAACTGAGCATGCGAGG 19668 28 100.0 32 ............................ AGAAAGCCCCAGCGCATCGGCCACAGCGCCAT 19608 28 100.0 32 ............................ AGATAGGTGAGATGCCGGCGTTAACCGGCGAT 19548 28 100.0 32 ............................ GCCGTGAATCGCACCGCCCTCGGGTACACGTT 19488 28 100.0 32 ............................ GTCCCGCTCGGGTCGATTCGGCCGGTTTCTGC 19428 28 100.0 32 ............................ ATGTCGCCGTTGAGGCCCATCGCGGCGTCGGC 19368 28 100.0 32 ............................ ATCAATTCCTTCGATAGTGTCGGCGATCATGT 19308 28 100.0 32 ............................ CAAGTAATCAATATCCACAATTCGCTCTTGAA 19248 28 100.0 32 ............................ TCGACTATACGAACATAATCGACCCACGTATC 19188 28 100.0 32 ............................ TGAAATTCATCGCGCACCGCACGCGCAGTAAT 19128 28 100.0 32 ............................ CTGCGGTTGCCATGCTGGCAGACGCCGATCGC 19068 28 100.0 32 ............................ GAAAGGCAGGGGGAAGGGCAAAGGGCGACGGC 19008 28 100.0 32 ............................ GCAGAACAACGCCCAAACGCTGCAGGTAAAGC 18948 28 100.0 32 ............................ ATCGGCGCGTTGAAAGCCATGGGCGAAGAGGT 18888 28 100.0 32 ............................ AGACCCCTCATGCGTTCGGTTCGCAAATGCTC 18828 28 100.0 32 ............................ AGACTAACGACACCAGGCGCTTAATAATTTTT 18768 28 100.0 32 ............................ TCCGGCGCATCGAGCGTGATTTTGTCAGCCGT 18708 28 100.0 32 ............................ TGCAGGCGCTTTACATACTCGTCGGTTACTGT 18648 28 100.0 32 ............................ TATCCCCAACCCATCTAACCGAACATGCGAGA 18588 28 100.0 32 ............................ AATGCCACTACGTTAAGCCGGTCGGCGTCTAC 18528 28 100.0 32 ............................ GGCCACCAGTCCCGCCATCAGCTCGGAGAGAT 18468 28 100.0 22 ............................ AGCCACAGCACGCCAATCGTGA Deletion [18419] 18418 28 75.0 32 CGA...A.A....C.............G TTCTCATAAGAATACGTCTTCGCCTTACTAGT T [18408] 18357 27 75.0 0 ..GT.......C.C......-..C...T | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGTGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCCCGGGAAAGAATACCGATGGCGAACGAGCAGCGCACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGTATTTGCCTGTTGTTCTTTAATAATCAGCTCATTAGTGATTTTTTTGTTCT # Right flank : AGAAGGGATAAAACTTTACCGACACCTGTTAACCCGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAACGCCGTTGAGCGATCTCCCACCTGGCAGTGAAACGCCAGCGTTAATTCCCCTTTGCCGCGCAGCGCCTTGGCACCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAGACGCAGCATGTAGAGGTACCAGAGAGTGGGGGAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCTTACCGCTTTACCCCTGTTTTCCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29136-28505 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWAE01000093.1 Shigella boydii strain 1177_SBOY 507_114141_3701372_374_,197+,164+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29135 28 100.0 32 ............................ GCCTGGTGGGCTTCCAGTTCGTCGGCCTCGAT 29075 28 100.0 32 ............................ CAGCTGGGCGGCGAAAACGTAAACATGATGCT 29015 28 100.0 32 ............................ GACGCCATTGCAACCGGCAGCGAACCGCCGTT 28955 28 100.0 32 ............................ ATGATTAAATCCAGATCGCCGGTATAGTCCAA 28895 28 100.0 32 ............................ CGGGCGTGTCGTGTGACCGACGACGCAATCGC 28835 28 92.9 32 CC.......................... AATCTGGATCGGAAATGGCGTCAGCGTGGTAA 28775 28 100.0 32 ............................ TCGGCGTGCCGGGTCTCGATTCCCTTGAGGTT 28715 28 100.0 32 ............................ ATCTGCTGGTATCGCGGGTCGTTTGGCCCTGG 28655 28 100.0 32 ............................ TGAATTTCGGTGGTATCGGTCATGATTTAATC 28595 28 100.0 32 ............................ AATACAACCTGGCGGGCAACTATCACACGGAT 28535 28 96.4 0 ....................A....... | G,A,A [28508,28512,28514] ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCGCCTATGGCCTGCACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGTTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCACCGTTTAATCGCTTCTAGCACTCGGCAACAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTCTTTTGCTCAGCTGGTTGAGCTGACAATCCAGGTCTTCTGTGGTGTCTATGCGTCTGAGAGAAACGGATGGTGATACCGAACAGGGAATCCAATAATTCCCCCCTAAAAATGCAGACACGCCACCTTACTCCGTTCTGGGTTGCCGAACCCTTTTTTGAGCGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTGTTTGGTACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCTTGGAAAAACGTGGTAGAACGTTGGTGTCGTCGGCATTGATCTGTATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCTTCTGAATTAAAAACAATATTGCACTCGAAACGAGCAAATTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGTCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCAGCGAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //