Array 1 523841-524581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041211.1 Listeria monocytogenes strain LMP18-H2446 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523841 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 523906 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523971 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 524035 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 524101 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 524165 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524228 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524292 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524357 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524421 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524487 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524510] 524553 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2641321-2639369 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041211.1 Listeria monocytogenes strain LMP18-H2446 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2641320 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2641254 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2641188 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2641122 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2641056 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2640989 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2640923 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2640857 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2640791 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2640725 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2640659 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2640593 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 2640527 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2640461 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2640395 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2640329 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2640263 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2640197 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2640131 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2640065 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2639999 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2639933 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2639866 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2639800 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2639734 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2639668 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2639602 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2639536 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2639470 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2639404 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //