Array 1 3309946-3309734 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050218.1 Escherichia coli strain RM-096-MS chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3309945 29 100.0 32 ............................. TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 3309884 29 100.0 32 ............................. TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 3309823 29 100.0 32 ............................. CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 3309762 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTCGACCGACTGGAGGCGGAGATTGTCGG # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3338998-3338542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050218.1 Escherichia coli strain RM-096-MS chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3338997 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 3338936 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 3338875 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 3338814 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 3338753 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 3338692 29 100.0 32 ............................. NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 3338631 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 3338570 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5698379-5698167 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050218.1 Escherichia coli strain RM-096-MS chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5698378 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 5698317 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 5698256 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 5698195 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GTTTACAGGTGGGAAAAAATTTCCTATGGTTATACCCGAAACCGAGCGATACCCGCCCTGGTTAAACCGGAGAAATCTGATGAATAAACAAGTAATTATTTCTGACTGGATCAACAACCCTAACAGCCTGTTAAGCACTGATACTGGCTACCTATTACGCCATGTTAATGGTCGTATGGTCAAAAGCGATGAGCACGAAACCTTTTTCTTTGTTGAAGACGATGGGCGTATCTATGAGGATGGTTACTCTTATGAAGCCCAAACTGGTTGTATCCCTGCGGAGCTGGTGGACGTAACAGAAGATCTGCGCAAAGCATGGCTTGAACAGCAGCAGCGCGGAGATGATTACGTAAACACCTATCAGGAACGCCAGAACGCGCGTCTTGCCCGATATATTGCTCGTGCAGAAAAAGCCAGAAAAGAAGGTGCGGTAGCGCATAAGCGAGCGCATGACCTGTTGGATGTGATCCCGTTAGGCCAGCCGATTTTAGTTGACCATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 6178510-6178843 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050218.1 Escherichia coli strain RM-096-MS chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6178510 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 6178571 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 6178632 29 100.0 32 ............................. TTTGTTTTGATGATTTATCAGTATATGAATTG 6178693 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 6178754 29 96.6 32 A............................ ACCGTTGCTACACATATGATCAGGCATGTGCC 6178815 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGAGTTGCCGGTGATAACCTGCATAAAACTGGCGAAGGTACCCTGACAGTAAACGGGACCGGTGTGAATATAGGCGGACTCAAGGTAGGGGACGGTACTGTTATTCTCAACCAGCAGGCGGATGCTGACGGAAAGGTACAGGCTTTCAGCTCTGTTGATATTGCCAGCGGTCGTCCGACAGTTGTGCTTTCTGACTCACAGCAGGTTAATCCGGATAATATTTCGTGGGGATACCGTGGTGGACGTCTGGATCTGAATGGTAATAACCTGACCTTTACCCGTCTTCAGGCGGCTGACTACGGGGCCATCATCACCAATAACAGTGAGAAAAAATCAACGGTAACACTCGACTTTCAGACATTAAAAGCCAGTGACATCAATGTACCGGTTAATACTGTCAGTATCTTTGGGGGGAAAGGAACGCCGGGAGACCTGTATTATGACACTTCTACCGGGCAATATTACATCCTGAAAGTGCAGCAGTTCATGCACACGGTTT # Right flank : GGTCAGCCGGAAAACCGTTGCCGCAGGTGACCGCGTAAACCGTCAGTGCGTGGCAGAACGTCCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGCACATGGCAGGTCTTCGTCTATAGTGGCGTTCATCATTGATGTATTTGCCGGATATATCGTGGGATGGTGGGTATCATCGTCCATGGAAACGACATTCGTGCTGGATGCACTGGAGCAGGCCCACGCCTTCAGTAGCGGAGCAGGAAGGACATCTGATGGAAATGGAAGCCACGCAAGCACCTTAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTACCGAAATCCCCATCCTTTAGGGCAGTGAGGATGTCAATAATAGCAGACCACATCATGAGTCATTCTGACCGACACATGCCAGAAGCAGAGGCTCCATCCCATTTTATACCTACCTTATAACACTTATAAAAACAACATGTTAAAAATGTCTATTGGAAACAATTTTATTTCCAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 6562991-6562779 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050218.1 Escherichia coli strain RM-096-MS chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6562990 29 96.6 32 A............................ ACCGTTGCTACACATATGATCAGGCATGTGCC 6562929 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 6562868 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 6562807 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTTTGGAATAGTAAAAGGCACCATAACTAGCAACAAAAAAACCATCACCTAAAGCTATCCCTTGTCTTTTATTATAATTCTTTGCATCAGGACTCGCATCTGATACAATATATCCAGAATAATTATTCTGTAAATAAATTACTCTTAATAAATCTCCACTTACTGAATATAGTTCAAGTCTATTTCTACTATACTTTATACTTCTTTCGCTTTCATAACCTTCAATAAGCCAATAGTCTTGACTCATCGAAAATTGGTTAAAAGCATTAATTGAAAAATCTCTTTCCTTAAATAATCTGTCACCATACAAGCTACTCACCATATTATATCTTTGCAAGGTTCCCGTATTCGAAACGACATATACAACATTAAACCCATTATAGTCTTGTATAATAGCCAAACCTTCGCCAGCCCCGCCTCGCCCACCACTTGGTATCTTATAGTACCCAAGGTAATTTCCTTTTTTATTATAACAAACTACTGCATGAAACCAGTGGCA # Right flank : CCATATAACCCGTTATCTCTGTGACGGTGGATGAGGTGCGTCCGGTTCTGCAGGCGATGGTGGATGACGCTGTGGGGGCCATTCCGGTACCGCGTGATGGTCGTGATTATGATCCGGATGTACTGCAGAAGGCGGTGAATGATGCGGTCGCAAATATTCCGCAGCCGGGGGACGGTAAAAGTCTCACCCCGGATGATGTGCGTCCGATGCTTGAACAGATGGTGAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGGTATGGAATCACATTACGGGCACCCTGGTGGTGGCCTCCGAACTGGCCCGCTCACGGGGAAAACGCGCTGGTGTGGCGGTTGCGCTGTCTCTTGCTGCTGTCACATCAGTCCCGGCACTGGCTGCTGACAAGGTTGTACAGGCGGGAGAAACCGTGAACGACGGAACACTGACAAATCATGACAACCAGATTGTCCTCGGTACGGCCAACGGAATGACCATCAGTACCGGT # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 6603696-6603301 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050218.1 Escherichia coli strain RM-096-MS chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6603695 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 6603634 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 6603573 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 6603512 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 6603451 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 6603390 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 6603329 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAAAATATAGCGGAAATGACTGCACCATAACCTGCATAGAGCCATATTAGTATCGGGGCAACTACTACGGACACAATAGAAACAAAAATCAGAACACGTGAGAGGAATAAAGTATTGCCTGAACACGGAAGATAAACCATTGCAAAAAAGTTACTCAACAAGATAACAACAATTAGCAATGACATTAGTTTTAGAAAAATTGGCAGTAAAGATATTGTAGGGAATAAATAACGAGAGAAAAAATCCGCTCCAAAGAAAATAAATAAAAACTCCATCCCCCCCAGTAATAATAATGAAACAATCGTTTTCCATGTACCATTGATGAACTTTGATTCATCATTTAAGTATTGTACTTGTACTATCTGTATAAACACATAATTCCCTGACACGATCCCCCTAATAATTTTGTCACTTAATGCATACGCGGCCAGATAAGCGGGCGATATAATGCCTAATAAGATCTGATAAAAATTAGTGTATATTATCGCCAGGGATATTA # Right flank : GGATTCTGCACTCTTTGACTGAATGTGACCTTCTGACAGAACCATCGCCTCTCTGTGGTCCCGGTCATCATGACCGGGACCCGGACCGGCGCAACGGATCTTCAACGCCACATTCGCTGGCATTAACGTGTCGTTACGGGGAAGTCATCTTCACAGGGATCTTCGGTCAGTTAGTATTACCGACATCCATTCACCAACTTACCGGAGATAATCGATGTCAAAACCCCGATGGACCATTGAACAGAAAAGGCAGCACGTTGCTGCCTGGCGCGCCAGTGGTCTTACACGTCAGCAATACTGTGAACTCAACGATATTCCCTTCACATCACTTCGCGAATGGCCGCAGGATGTCGCAAAAGCTGAACGCCGGGCAAATGAACCGACCGTTCTTCCCGTTCATATTGCGCCACCACTGCATGCTGATGTACCACAGCCCGTCACGAATGAGCCAGTCACGCTCTTCCTTCCCGGTGGAGTACGGATGTGCTGTCAGCCGTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //