Array 1 63363-62614 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHMQ010000033.1 Pseudomonas aeruginosa strain SK020 contig00033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63362 28 96.4 32 ..C......................... TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 63302 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 63242 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 63182 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 63122 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 63062 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 63001 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 62941 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 62881 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 62821 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 62761 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 62701 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62641 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGTCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 140-527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHMQ010000044.1 Pseudomonas aeruginosa strain SK020 contig00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 140 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 200 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 260 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 320 28 100.0 32 ............................ TTGACTGCTGGGGCCTGACGCTCATCGCGCGG 380 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 440 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 500 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CACAGGCCGATCTGGATCGTGACGCGCTCTGTGGCGCTGAGTTCGTGATAGGACATGGGGCAACACCTTACCGAAATGGTCGGGTGTTGCACTCAGTTTTTGCGGCCGCCAGGAGATTGCCATGCTGATCAAACTTCCCG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 167949-166842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHMQ010000008.1 Pseudomonas aeruginosa strain SK020 contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 167948 28 100.0 32 ............................ GACAAGAAACTGTTGGCCGAGCATCGGCACCG 167888 28 100.0 32 ............................ TGCAGCGCCGCGAACGGCAACGGCGGCGACGG 167828 28 100.0 32 ............................ TGGAACGCATTGCCTGCCTGCGTAAAGAACTC 167768 28 100.0 33 ............................ TGTGCCGTCCGCGATCTGGCGGATTGCCGGCTA 167707 28 100.0 32 ............................ AATCTGAAACGCATTGGCGAAATACACCACCG 167647 28 100.0 32 ............................ ACTGTTCGAGTCGCGAATGACTCGGTGAACTA 167587 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 167527 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 167467 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 167407 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 167347 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 167287 28 100.0 32 ............................ GTATGGCTCTCTCCATTGGGGTGGCGATACTC 167227 28 96.4 32 .......A.................... GATCTGGGGCGGCATCATCACAGCAGAATCTA 167167 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 167107 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 167047 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 166987 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 166927 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 166868 27 92.9 0 .....................A..-... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : GTGCCGGTGTCAAGTCTTTTGCGCAAATCACGCAGGGCTTGAAACCGTATATGGGACAGTACGTTAGCTCTTTTCGGGCCCGCTTTGCAGAACCACGGCTTCGTCGGCTAGGAGCCACATAAGAGCGTCGGGGGAGAAAGCCGCATCGCACTGTGTCGTGCTGATTGCCGAGGAACGGCGGGCCTGTTACGTCATCATAGCCCAAGAGGCTTGGCGGCATCCAGAATGAAGAACGCGCAGCCGGGGCTGCGCGTTCGATGGATGCCGTTGGCATGCGACGTCATCATGTCGGCTTCGATGGCGTGCTCCGGGTCGCCGTGCTCTTCCTGAATCCCCGATCCCCCGCCATGAACGCCTCCAGCATGTGCGGGATCAATTTCTCTGCATCGACCGCCTCGCCATACGCCTGCGCGTGCAACGCGGCGTAGCGTTCGAGGTCGGCTTTCAGGCTGGCCGGGCAGGCAAAGGTCATCTTGACGCTCTCGGTCTTGGGCAGTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //