Array 1 5565-6784 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGK01000052.1 Staphylococcus simulans strain SNUC 1354 contig052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5565 36 100.0 30 .................................... AACTCGAACCATAGGAATCTGCAATACCTG 5631 36 100.0 30 .................................... CAGCAGCGGTCTTGTTTTATCTACAGACGG 5697 36 100.0 30 .................................... TTATGGCGTTTTGTGAAACAGTGCCGAATG 5763 36 100.0 30 .................................... AAACCTAATTCTTTTCTGTACTCATCAGCT 5829 36 100.0 29 .................................... ACATTATCGCAGTATGTTAGCTGACGAGC 5894 36 100.0 30 .................................... CAGCTATCAAAGACGGACGTGTAACCAAAG 5960 36 100.0 30 .................................... GGTTGCTTGGCTGCGCCATTACCTCCAGGA 6026 36 100.0 30 .................................... CCTGCTTTCGTTAAGAAAAAGGCACAAGGG 6092 36 100.0 30 .................................... GTGAGTGTACACAAAGATGAAGATGACATT 6158 36 100.0 30 .................................... AATCATTCTAACGCCACACAGACACGCCCT 6224 36 100.0 30 .................................... TTTCAGCAACAAAGAATATGCACTAAGTGT 6290 36 100.0 30 .................................... GGCGTTATCGGCACTATTGTCGCTTTCGTT 6356 36 100.0 29 .................................... AATATAACAACGTGGTTATAAGATCGGCA 6421 36 100.0 29 .................................... CCTGCGAAATATTGATAACCACGTCACAA 6486 36 100.0 30 .................................... GCGTGGTAAGTGTCGACTATCGACCTAACG 6552 36 100.0 30 .................................... TTTTCTATTTGCCGCTGCCCTTTTCTTATC 6618 36 100.0 29 .................................... AGGCGTGTTTGAATACGACGATCCGAGAA 6683 36 100.0 30 .................................... AAGTTCTTGCATTATGTTCAGAACATCATA 6749 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCAACTAGACATTGATAGGGAGAAAATTTCTTCAGCATTATCAGTGTATCTATTTTCTTAACCATAATTCAAGTTTATAATTGTGCTAGAG # Right flank : CACTAACCCAAAAGGAACTTGAACTGCACCTGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATTTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACACAATTACTACACATTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACACCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 688-1379 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGK01000039.1 Staphylococcus simulans strain SNUC 1354 contig039, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 688 36 100.0 29 .................................... TGTTTAATAAATAATAAAACGACGATTAA 753 36 100.0 30 .................................... GCAGCAAGACAAGCAATGACGAAACATCAG 819 36 100.0 29 .................................... CAATTAAATTATAAAAAAGGGCAGAAAAA 884 36 100.0 30 .................................... GTTGGAGGAAGTCGGAAAAATTGTTGGTGT 950 36 100.0 30 .................................... CAAAGCAAGAATTAAAGGAGAAAAACATCA 1016 36 100.0 29 .................................... AAACGTTATCAACACATTCGTAGGGTTTT 1081 36 100.0 30 .................................... TTATTGTAATGATGAAATTGAATCAGTTGT 1147 36 100.0 30 .................................... AAAAGAAAACGGCAATGCTGGCGTTGTGGG 1213 36 100.0 30 .................................... TGAGATGATTTGAGAACCATTTAAGCCTTT 1279 36 100.0 29 .................................... TATCCAAATCATAGCTACATGCTCTTAAA 1344 36 88.9 0 ............................TT....CA | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.0 30 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AATATTGTTTTGAAAAAGTTGCTTGGCATGTTTAAACCAGACTTTCATAATGATTTAGAAGATTTAAATGCGATAGAGCAACGCAAGTTATTTATAGACACATTAACATCAACAGAAAAAGAAAATGTGTTGGTTTTGTTATTTCCTGAAGCTCATTTAGGGCTTTCGGATATGAAGGCATTTAAAAAATATCTGCAGACTCTAAATATGTTTAGTATTATTGTTACGAGTCATCCTTATTTTATTATCGAGTCAGATACATTAGCGCTTATTAAAATGAATGGAGAACCGGTAAATACTAAACAAATAAGAGAAGAGTTATTGTTGTTTAAAGAAAAAGAAAAAATAACTGATTTGGATAAGACAAGCAAAATGATAGCTTATCATGAATTTTGCCAACATCCATATCTTGATGATGAGTTCTTCATTCAATTTATGAACAAATATTAGTTTACTGTCATTATAAAGGTCTCTAAAACCTTGATTTCTCGTTGTTTAAG # Right flank : AAGCGGGTATAACTTAACTATTTATCGTGCTTGTTTGAATGGAAAAATCTTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //