Array 1 6977-4774 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBH01000014.1 Campylobacter concisus strain AAUH-43UCf 1101469, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 6976 37 100.0 34 ..................................... TCAGCAGAAGCTAGGTGATTTTGAGCGTTATAAC 6905 37 97.3 40 ..................A.................. GTGAAACACACCGTCAATATTGTAGTAAGTCATCTTTTGC 6828 37 100.0 46 ..................................... ACAATGGAGTGTTCATTTTTATCTCCTTTATAAAAAATAAAAACAG 6745 37 100.0 38 ..................................... ATTACTGTCACTCTCTTCAGGAAAGACAAAATAGTTTT 6670 37 94.6 39 ..CT................................. GGTAATACTGATGCCGATGCATCTTCACCGCAGAATTTA 6594 37 97.3 42 ....................G................ TAATGATGTTCTCATTGTAAATCCTTTAAAAAAAATAATATA 6515 37 97.3 38 ....................G................ AAGACCCGGCGTCATAAGCCGAATCTGCGTTGAAATAA 6440 37 97.3 39 ....................G................ ATCTCCGTTTGAATAAGTGCTAGTGGAGCATTTATAAAA 6364 37 94.6 47 ..CC................................. TTAGGTCTAGTCTGGACTACATCAGTGAACTCGTCGTCATCAATGTA 6280 37 94.6 45 ..CC................................. AAAGGAACAAGTTGGCGGCAACACTTTCTGCCCAAGCCATTTAGA 6198 37 100.0 44 ..................................... TATCTGTGCGTACCATAATGTACTCCTTGTGTTAAAATTTTGGT 6117 37 100.0 47 ..................................... AAAAGCTCGGCTAAGTCGAACTTTTTTGTTTGCTCTTCATCAGTAGC 6033 37 100.0 35 ..................................... TGAGAAAAAAGGATATTTTTAAATTTTCCATTTTG 5961 37 94.6 43 ..CT................................. GCTTACTAGCAATAAGCTAGCTATTAATACTCTTTTCATTATC 5881 37 97.3 41 ....................G................ ATAAAGCATGTCTCTTCACGTTTTTCGCCATTGACATTAAA 5803 37 94.6 40 ..CC................................. TACCTCTTTCGAAAAAATTTCTTCTGCAGCAATTGATCTT 5726 37 94.6 37 ...........T........................T CTTATCAAGGAATTTCTTGAGATAAAGTCTTCTTTGC 5652 37 100.0 40 ..................................... GTATTTATCTCTTCAGATTGTTTATCAAAGAAACTCTCTA 5575 37 86.5 41 ..CT................G....A.........G. CTAAAAGCAGGAAAAAAATAGAAATAATCAACTAGCACGAG 5497 37 94.6 39 ..CT................................. ATTATATCGTTTGCTCTGCTGAAGGCATCTTTTTGGGAC 5421 37 91.9 41 ..CT...........T..................... GCAATTCTCAGCGTAAAACTGATAATCTTTTTCATAATCGT 5343 37 100.0 38 ..................................... TCGAAAGAAACGATTGGACATTGTGGGATGAGGGACCA 5268 37 100.0 41 ..................................... AGCTAAAGACAGATAAAGCCTATTCATATCTTGCATATCGC 5190 37 100.0 39 ..................................... AGGAGCAGCTTTTTCTGTCCCAAAACAATTCAACATTGA 5114 37 94.6 39 ..CT................................. AACTATTCTCTTAACTATGTCTTCTGTTAACGTACTCAT 5038 37 94.6 37 ..CT................................. ACAGATGGTGCTTCTTGTCCGTTGTTTTGCTCTGCTT 4964 37 94.6 40 ..CT................................. GCGTAGCACCAATATTTGCCGTCAATCAGTGCCATGTCAT 4887 37 97.3 40 ........G............................ AACATCCCAGTCGTCAAAAGCTTAATCGAAAAAGCTGAAA 4810 37 91.9 0 ..CT...............................G. | ========== ====== ====== ====== ===================================== =============================================== ================== 29 37 96.6 40 ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Left flank : TTCTTTCAAACATCTACCTTGATCAAATGGATAAATTTCTCGAGCATAGCAGTATAGAGTTTGTAAGATACGCAGATGATTTTGTTCTATTTTTTGGCTCACGTGAAACCTGCGAGCAAGGGCTTGCCAGACTAAAAGACTTTCTAGTAACCACATAAATTTATCCCTAAACGAAGCCAAAACATCCTTGCACGACAAAGATAGCGAATTCACCTTTCTTGGCGTAAATTTCAAAGCTCACGAGCTAAGCATAGGCGAGGATAAATTTGCACGCATCTTAGCAAAACTCACAGCCTCGTCCAAAAAGCCAGAGATCGCCCAAAGCGTAGAGAACATAAATGCCCTTAAATTCGCTATCTTAAGCTATCTATAAGCAAAAGAGTGCGAATTTGAAAAATTTTTTTAGCCACATTTTCGAACATTTTGCCATTTGTGATATAATGCGGCCTATCAATAGTTCTTTTAAAACTCATTGTTAATTCACAATCGTTTTTTAGGCT # Right flank : GGGCAGATCTATTGAGCATAGTTCCCAAGTATTAATTCATAGATATATTTCATTTTAGTTATTTTTTAGTTGGTATATAAAAAAATAATCGTCATATTGACCATATCTGACAACGAAACTTTTTATAATTGCCTCCGAAGTTGATGCTAAAGCGTCAATAAAAAAATTAAGGAGTTTTTATGAAAAAGATCGCATTATCTTTAATGGTTGCAGGAGTTGTAAGCTCTGCTTTTGCTAGTGAGGCTGCTAATCTAGCTAATATAGCACCTACTAATCACGACAAAGTTGCCATCGCGCTAGACACTTACTACAAAGGTACTGACATATGGGGCGCTTCATCTTTCGCTCTTGGCTTTGATGGTAAATATGGCTTAGTGCAAGCTGCTAATGGCGAGCTATACTTCCGCTTAGCAGGCCATGCTGGCGTTAGAAGCAAGGATGTGCATAGATTTCTCGAGATAGGTGGCGGACTTGGCTGGTCTCAAAAGCTATCTGAAAAT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGATACAAATTTCCCCGATCTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 27723-28741 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPBH01000014.1 Campylobacter concisus strain AAUH-43UCf 1101469, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 27723 37 100.0 38 ..................................... ATCGCTCCATTCACGATCAAAAAATCTTATGCTGGAAT 27798 37 100.0 36 ..................................... ATTCTAGATCGAATTCTTTAACCTCTTTTTCTCCAA 27871 37 100.0 38 ..................................... CCCAAACCCACTCCATTGACTCATCCCAATGAGACCAA 27946 37 100.0 40 ..................................... ATTTCTCAGTTGCGCCTTCTTCTAGACATTCTTGCTTAGA 28023 37 100.0 38 ..................................... TATACTTAATAGCTTTTCTCTGTCTGGTTTTCTAGAGA 28098 37 100.0 39 ..................................... ACGTAGAAGATAGCAATAGCAATAAGCCATTCCATCTGA 28174 37 100.0 36 ..................................... TAAATTCCTTAATTTCCTTGCCATTTATGGCTTCTA 28247 37 100.0 37 ..................................... GTAAGAGTATATACTGTAGATGAAACTAATGATATAC 28321 37 100.0 38 ..................................... ACCGTCGCATGAACCAGACTCATAGGCTGAGTCTGCTT 28396 37 100.0 40 ..................................... GCTGGGGAATACTTATCGGCGAGATCCTTTATCTCATCTT 28473 37 100.0 38 ..................................... ATTAGGATTGATGGAAAATGACGCAACTCTTCAGTTGC 28548 37 100.0 43 ..................................... AAAGATTTCTCTTTTACAGCTTCTTCTTTAGCAGCATTAGCTA 28628 37 100.0 39 ..................................... TTTATGTAATTCAGTTGATAGCCGCTATCTTTACTTGGA 28704 37 94.6 0 ................................A...A | T [28738] ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 99.6 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGCGATAAAAAAGGTATCTTTGAGATGCAAGAGCTCTTTGTCTAGCTTATGTCATTCTTAAATTTCTTTTGGATTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTAGCTAAAATCTCGCGAAATAGGTTCGCAAATCTAGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGGCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGACTTGCGAACTTTTTTGAGATGACAAATGCCTAAATTTAGGGGTTCTTTCACTTATCATTGTTAATTTTATGGAGTTAGTATTTTTAAATACCTATACATTTGCGAACTTTTTTGAGATTTTCACGAATTTTAGGTATCTTTAAAGCCAGTTTCTTAAATAATTTTACTAATTTTTTCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : AAAATGACAAAGCGTAGGCGCTTTATGTTATAAAAAAATGTGTAGTGCTTATATGCTTGTTGAATAAATTTAGATAAGAAGATGTGAGATGATAGGTTTTTGTGATTTGCGTAGATAAATAAAAGCTACGAAAACGAGCCATGAATTTTACTTCATGGCTTGCATGGGCCAACTATTTAGAAGTTGGCTTCATGCGAAACGTGCCCTTAGTCGTTTGGACTTTGGTATAGCCACCAAAGCTTTGACCCACTTTTTGACTAGCACGAGCAGATGAGTAAGATCTGCTTGAAGATGATGAAGAATAAGAACGTGAATAACCTTTTGCCATTTTGGCCCCCTTGTGTTGAATTATTTTGTTTTGTTGGGAGAATTATAAAAGAGTGTATGGACATATTGTGTATAATTCATAAAAAACTTTAGAATATAAAGGATAAAGTAATGGACGCTCAAACTAGGATACTATGGCTACTTAAAAAGCTAAATCGTGGCGAAATAATCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //