Array 1 102631-103513 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNL01000006.1 Cronobacter malonaticus strain cro909B1 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102631 29 100.0 32 ............................. TAAATTGCACGGATGGCATGCGGGGACGATAT 102692 29 100.0 32 ............................. CAGGGAGGCTGAGGCTCAATATCAGCGCGCTA 102753 29 100.0 32 ............................. TTATCGGCTAATTCAGCCGTTCCGCGTTTAAC 102814 29 100.0 32 ............................. AATTAAGCCGCGAACAGGCGATACTTAACGCA 102875 29 96.6 32 ............A................ CGCACCACTCTTCAACACCTACGGCCAGCGCC 102936 29 100.0 32 ............................. GAATACACAGACGACCAGTTATACGACGCGCT 102997 29 100.0 32 ............................. CGACAAAATAAAAACAAAAAACTTTGGCGACA 103058 29 100.0 32 ............................. GACTTTTAACAGGGGCGATTGCTCATCCGATA 103119 29 100.0 32 ............................. TGGGCCGTTCAGCTCCGCTCTTACGTCCTGAA 103180 29 100.0 32 ............................. ATTAACTCCATATCCTTACCAGTTCTTCCTGA 103241 29 96.6 32 ........T.................... CCAGGAAGACATGCTCGACCAGATTATGCGCG 103302 29 100.0 32 ............................. GCTGGGCCTGTATGACCTGCCGGAATACCAGA 103363 29 96.6 32 ............A................ AACTATCTATTTCCTGATAAATGGGGGATTTA 103424 29 96.6 32 ............A................ AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 103485 29 93.1 0 ..........G..............G... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCACGCCTGTCAATCGCCGCCCCATTTCCCCTCACATTCTTCATCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAACGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : CTGTTCCCCGCGAGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 130233-130993 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNL01000006.1 Cronobacter malonaticus strain cro909B1 contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130233 29 100.0 32 ............................. CCTGTGCGCATAACGCCGTAGTGATCAATGAT 130294 29 100.0 32 ............................. AAATTCTCCAACGCTTCTCAGGTGACGTCACG 130355 29 100.0 32 ............................. CCAATCGCCGCAACGTTCATTATCGCGCTGCG 130416 29 100.0 32 ............................. CGCTGGATAATTTCTCTCTTGTTCCTGGAAGC 130477 29 100.0 32 ............................. CAGACCGCGTACGACGGGATGCCGAAAATCAG 130538 29 100.0 32 ............................. ATCTGGCAGGAGAGCGGGGGTAATCATTACGG 130599 29 100.0 32 ............................. CCGTCCCAGGACATCCCCTCGGTGTGAGACGG 130660 29 100.0 32 ............................. GTGCCGAATTACTGCGGCTGGCGCGGCTAGGC 130721 29 100.0 32 ............................. ACGCAGCGTTTATCGAGCGACTGATACTGCGA 130782 29 100.0 32 ............................. ATAAAAAAATAATTGATGAAATAAATGCTTTA 130843 29 100.0 32 ............................. AAGTCTATCTCGGTTTTTCACCCGAAATAGGC 130904 29 100.0 32 ............................. ACGCCGAATACGCTGCGGCAGACGCGTGGCAG 130965 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAAATGATCTGGCATCAGATAAATAAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATCATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTGGATGGCCTGAGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAGCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GGTATATCAATAACGTGGTTTATTGAATATGTGCAGGAGCATTATTTTATATGGCAATATATAAAAAACAATTCTGAGTTGGGGTATAAAGATAACGGCAATGCTTAAAGAATTAAAGATTATTACATCGCTTCTATTTTTGCTGATTATATTTATATGATTTTTATTGCTGGTTTTTATGTGGGTTAACTTAATTTCAAAGTTGAATACAGTATTTATTAATTTGTGCATGTAGAATTTATATGTTCTTCATTTAATAGGACTTTATAAATGACATGGGATAAATATGCAGCAATACGTCATGCACAGGATCGTGCCTACAGTAATAGCTATCATAAGTGCGAGTTATTTGTTAAAGAAGCTATTATTGCTGGTGGGGTTGATATACATCCAACGCCTTCTGCAAAAGATATGGGTAAGGCATTGATTCAAGCTGGTTTCTATGAGGTTTATGGTGAGCCCGTAGCTGGTGATGTCGCTGTTATTAGCTCGATCCCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //