Array 1 301385-305983 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPKV01000006.1 Pedobacter chinensis strain JDX94 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 301385 46 100.0 31 .............................................. TTGACCCTGCGATCACCCGCGCTTTGCTCTG 301462 46 100.0 29 .............................................. AACAGCGCTGTTTTAGTTGATTACCTAGT 301537 46 97.8 30 .........................G.................... TCGTTTACACTATACTTACACCAGAAAAGT 301613 46 100.0 30 .............................................. GATGTGATGTCTGGATTGAAGATAAAAGCT 301689 46 100.0 30 .............................................. AGGAAGCATTCACATGAGTAGTGAACTGCC 301765 46 100.0 30 .............................................. CATGATCAATATCAAGTATGATGTTGCCAT 301841 46 100.0 30 .............................................. GTCGCAGTACGAAGAGAAAGCCGTAACAGG 301917 46 100.0 30 .............................................. ATAGATCTTCTGTTAGCTCGCATGCGATGC 301993 46 100.0 30 .............................................. CTTATGAATTACGCTGCGGCATTTAAACTG 302069 46 100.0 30 .............................................. AACTCTTTTCTGAAAGCATGACTATAAGGT 302145 46 100.0 30 .............................................. GTTATCAATAGTGATTGGAAACATACACTG 302221 46 100.0 30 .............................................. AATGTATTGACCAACCTTGTAAGTCATTTG 302297 46 100.0 30 .............................................. CGAAAGATGATTTGGCATCTGCATGAATAG 302373 46 100.0 30 .............................................. AATGAAACGTGATTTCCTTAAGGCAGTTCC 302449 46 100.0 30 .............................................. AACTTTCGTTGAACCTTTCCCTTCAGACGA 302525 46 100.0 30 .............................................. CAGGCCTTTTTTACAGTAGATCAATGCATC 302601 46 100.0 30 .............................................. TGGCCTTTTCAGCGGAAAACATCAGGTTGG 302677 46 100.0 30 .............................................. TTCTAAGTCTAATGCGGTTGCGATGCTTTC 302753 46 100.0 29 .............................................. AGAAAATCAAAAATGACAACGGACGTTTG 302828 46 100.0 30 .............................................. CATTCCTAATGACAACGGGAAGCCGATTAA 302904 46 100.0 29 .............................................. AGCTCCTAATGAAATAACCCATTCATTAT 302979 46 100.0 30 .............................................. ACAATATTGTCAAAGCCTTTATCATTTATA 303055 46 100.0 30 .............................................. TTCTGCAAGTAATTCGTTTGCAAGTTCTAA 303131 46 100.0 30 .............................................. ATGGTTGCTATGTGGATGTAGTGGTTAGGG 303207 46 100.0 30 .............................................. CCTTAAACCTTTACCCATCCCCTGCTCAAG 303283 46 100.0 30 .............................................. TCGTTTACACTATACTTACACCAGAAAAGT 303359 46 100.0 30 .............................................. GATGTGATGTCTGGATTGAAGATAAAAGCT 303435 46 100.0 30 .............................................. AGGAAGCATTCACATGAGTAGTGAACTGCC 303511 46 100.0 30 .............................................. CATGATCAATATCAAGTATGATGTTGCCAT 303587 46 100.0 30 .............................................. GTCGCAGTACGAAGAGAAAGCCGTAACAGG 303663 46 100.0 28 .............................................. CAAAAAAATGAATTTTCTATAGCTGTAG 303737 46 100.0 30 .............................................. AATGTGCTTCATCAGCTATAATTAAACCGA 303813 46 100.0 30 .............................................. TCTATAGGAGTACAGAATACTTCACATAAT 303889 46 100.0 29 .............................................. ATATAAACTGATTTCTGATCGTAAGTTCG 303964 46 100.0 30 .............................................. TTCTTCATCATCAACCTCTGTAATAAATAA 304040 46 100.0 30 .............................................. GATGTGATGTCTGGATTGAAGATAAAAGCT 304116 46 100.0 29 .............................................. AAGTTTCTAAATGAATCAAACCATTCATT 304191 46 100.0 30 .............................................. CTTTACCCGCGCATCGGTGTTGAGCCAATA 304267 46 100.0 30 .............................................. TCAGCACTTTATTAACACAATCCTCAAACT 304343 46 97.8 30 .............................................T ATCAATGTGGACGCACTTTGATCATTCATC 304419 46 100.0 30 .............................................. CTAGGTACTCGTTTAGCCAATAAATAGTAA 304495 46 97.8 30 .C............................................ AATACGACATAAAAGTAACACCTTTTAACG 304571 46 100.0 30 .............................................. CTTTACCTGTGTCATCCAGCCCTAAAAGTT 304647 46 100.0 30 .............................................. TTAAACAAATGTATTGAAAAACTCGATAAA 304723 46 100.0 30 .............................................. CACGTCTAAACGTGGTGGTGTTTCTCTTGA 304799 46 100.0 30 .............................................. ACTGATCGTTCCACCTCTTACCGCCGCATA 304875 46 100.0 30 .............................................. TAATATAAACCCCTTTAGCATCAACAATTA 304951 46 100.0 29 .............................................. GAAGATATTGACGAATACATTGAAGATTT 305026 46 100.0 30 .............................................. CGTAAATGACTATGGGATCATCATCGGCCG 305102 46 100.0 30 .............................................. TAGAACCCCGTCCCTTACTGTGAATTTTGC 305178 46 100.0 30 .............................................. CAAATAAGCCAGAGGAGAAAGTACCTAAGT 305254 46 100.0 30 .............................................. AATTAGATTTGCGCCATTAACGTTTACTTT 305330 46 100.0 30 .............................................. TGTAGGTTCCATTAAATGCCCTGCCAAAGT 305406 46 100.0 30 .............................................. TTTAGCTTTTCCATAATATTATTTATTTAG 305482 46 100.0 30 .............................................. CAAAACCTTTTGATTGGCAAGAGAACCGTA 305558 46 100.0 30 .............................................. TACAACGAATTCAGAAATAACCAAGCTCCT 305634 46 100.0 30 .............................................. AAAGCAGCATGCGAGTATTTTCAATGGTGT 305710 46 100.0 30 .............................................. AAACAATCTTGATAGTTTGAGCATGGGAGA 305786 46 100.0 30 .............................................. TGAGGTTGCTGCCAATTGCAACAGGGATTT 305862 46 100.0 30 .............................................. TATACTAGATGTTTTTGATGAATGGGACTA 305938 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 61 46 99.9 30 GTTGTGATTTGCTTTCATTCTTTGAACTACTGATATTTACAACAAC # Left flank : AAACCATGGCTTATTTTGAACAAACTTTAGATGCAAGCCAGTTTATCCGCATTCACCGTTCTTACATCATTAATCTGGCTCAGGTAACTAAAATCGAGTTAAAGGAAAAAGATAGTTATGTCGTGTTGCTTAAATCAGATATTTGGTTGCCCGTAAGTAAAACTGGTTATGTGAAACTGAAAGCCGCTTTAGGTTTGTAATCTTTTTTTTGAAAAGCAATTCACTGCTGAGATTATTGTTCATCCTGTTTTTTGTTGCAATCTTTTTGTGATTGTTGAATTGGTAATGAATGTTTCTTCAGCAAAAAGGAATTTTCACGTCAACCAGGTTTATGTAACTCCGGTAAATTTAAGAGCCGTTCGCCCTGCTTGAACTGTGGTATTTGAAAGATGCTAATTGAATTTTAACTTTCCTTAGTATCATTTCCTATGCCAGCGAATGGGTAACGAGGATTTGTTTTAGGCAAGGCGCATAGTACACTAGGAATACATACCTACGTG # Right flank : CATACCATAGTTCAATTAACTATCCATCAGTAGGTTAGTTCAAAAATTAGAATTAAAAAAAATCGGATGTATTTGCATCCGATTTTTTATTCTAATCATTTCTTTTATTGTAATGGTATTATTTTTAAAACAATTCGAGTTGTTGCGGAGTATCAGGTAATTCTTTTTCTTTCTTTCCGTAAAATAATTCCATCATCCCAAATTGCTTATCTGTAACCGTCATGATACCGATATGCCCTTTTTCTGGTAATAATCTTTTAACCCGATTAATATGTACATCGGCATTTTCTCTACTGCTGCAGTGCCTCAAATAAATAGAGAATTGAAACATCGCAAAGCCATCCTTTAAAATTTCTTTACGAAATTTAGAAGCTATGCTACGTTCTTTTTTCGTTTCAGTTGGCAAATCAAAGAAAACTAATACCCACAAAATTCGATATTCATTTAAACGCATCAATTAGAATGGAAGTTCATCATTAGATTTTTTATAGCCAGGCTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTCTTTGAACTACTGATATTTACAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCATCCTTTGAACTACTGATATTTACAACAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 99132-99296 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPKV01000008.1 Pedobacter chinensis strain JDX94 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 99132 33 100.0 34 ................................. TCTCATTTCATCAAACAAAATCTATTTTAACTTC 99199 33 93.9 32 ......................T......G... AACCATTAAAATCTTTAGGTCAGGAACACTTT 99264 33 97.0 0 ....................A............ | ========== ====== ====== ====== ================================= ================================== ================== 3 33 97.0 34 CTGGTCGTAGCGTCTCGCTACGACCCTAAAAAA # Left flank : GTGGATATGAGTAAAGGTATAGATGGTTTCAAAAAAACTGCTAATGATTTTAATAAAGTAGCAGAATTGGCAAAAGCATCAGGATTAAAGTTTGCTTATCACAATCATGATTTCGAGTTTAAAAAATTTGAAGATACTACAGGCTACGATGTTTATCTAAGTGAAACAGATAAAAATCTGGTCAATTTTGAGATGGATTTATATTGGGTTGTGCGTTCAGGAAATGATCCTCTCGCGCTATTTAAAAAATATCCAGGTCGTTTCCCCATGTGGCATGTAAAGGATATGGACAAAGCAAAACCAGAATGGAATACAGAGATTGGAAAAGGTTCGATTGACTTTAAAAGCATTTTTGCACAAGCAAAGCTTTCGGGCATGAAACATTTTTTTGTAGAACATGAAAGTAATTATAAACCAGATCCAATTGGTTCGATAAAAACAAGCTGCGATTATATTAAAGCTAACCTGGTTTAGTTTTTCTCCTTCTGGCCGTAGCATCT # Right flank : ATCTCATTTTCATCAAACAAAATCTATTTCAATAATATCTCTTTGTGGTTGTAAATGCAAGAAGATCACGGATGCTCGGTTGAAGAACAAAAATTACAGGAAAAGAAATCAAGATGAAAGCCAGTTCAAACTCCAAATTATAATATTAATCGAAAAATTAAATTTGCTGACTAATTTGAACAAATCAGGAATATTTTATAAAATTGTTTATTCATTTACAATAGCCTGAGCTTGTTATATATTTCAGAAGGCCAATAATCATTTATAGTAAATAATTCAAAACTTGTTTAGTATCTTTAATTTTATCTATTGGGATAAAAATTAAAGATATATAATTATGCTATTTTTCGCCGCTCCATTGTTCTTTATTGCTTTTATTGGTTGGATAATTTATGCTAGTCTTATTAAGAAGAATTTAAAACAAAATATGCCATTATTTTATATCGGCTGCATTTTCAGCGTTATTTGGATTGTCATAGTTTTCATTGCCCTCTAAACAT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGTCGTAGCGTCTCGCTACGACCCTAAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //