Array 1 20-475 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTPS01000125.1 Escherichia coli strain ICBEcBL-II-13 NODE_137_length_7911_cov_9.620150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 ............................. AGTGGTCAGCCGGGTTTATCGCCCGCGTTGAC 81 29 96.6 32 .............T............... CATTTGTGGAAATTCTCCCACCTTACGAGCCG 142 29 100.0 32 ............................. ATAACTATGCGCATGATCACGATTGAGTGGAG 203 29 100.0 32 ............................. TGCAGGCGGGGAAAAAACGCCGTTTTGTGGCT 264 29 100.0 32 ............................. GCATTGCTGTCTCAAATAATTAATCCGGGGAA 325 29 100.0 32 ............................. CGTTTAGCTCCGCAATGCTGGATATCACTGAT 386 29 96.6 32 ............T................ TATGGGAAACAGTAGCAACTGGCACACTGGCG 447 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCTCCTCACGCTATATCGG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGATTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATAATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAAATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5561-6077 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTPS01000486.1 Escherichia coli strain ICBEcBL-II-13 NODE_569_length_6048_cov_10.209656, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5561 29 100.0 32 ............................. CTGCCTTCGCTCCAAGAAAACGATGGTGACCA 5622 29 100.0 32 ............................. ATCGGGACGGGTTGACGCCAGCGAACATTGAC 5683 29 100.0 32 ............................. CCTCTAATGTGACAGGAATGATTTCAATGGCC 5744 29 100.0 32 ............................. TGAGACGTTTTACATCTTTTTGGCACACTGTT 5805 29 100.0 32 ............................. CTACTGGATGCCCGATGATGCCGATCCTGCGG 5866 29 100.0 32 ............................. TATTACCACGGGCGGCACGTTGCCCGGACAAT 5927 29 100.0 32 ............................. ACTGTTGTGATCCTGCGATCGATACGATTTGC 5988 29 100.0 32 ............................. GGAGCAAACCATGGAAGACGCCAAAAAATCCA 6049 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : TTAAATATTCCGACCCTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10360-12217 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTPS01000380.1 Escherichia coli strain ICBEcBL-II-13 NODE_428_length_14936_cov_10.468533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10360 29 100.0 32 ............................. CATTCGAGCGTTACACCCTGGCAAGGGCGACC 10421 29 100.0 32 ............................. AAAATAGCGACATGAAAAATAACAGTAGAGGT 10482 29 100.0 32 ............................. TTGATGACGTTCCGCTATTTCCTGGACAGTGT 10543 29 100.0 32 ............................. GATCTGTGTGGCTGGTTCGGGCAGTTGCTGAC 10604 29 100.0 32 ............................. ATGCGGTTTGCATATGAACTTTTTGCTTAATC 10665 29 100.0 32 ............................. TTAATTGTCCGTTGTACCCCAAGTCTGAAGGG 10726 29 100.0 32 ............................. GTCAGGGACCATGATTCGCCGCCCGGTTCTGA 10787 29 100.0 32 ............................. GTGAAAACGACGGCGACGGAACAGGGAAACGC 10848 29 100.0 32 ............................. CCCGCTGGCATTTATATTTGCCCCATGTGTGG 10909 29 100.0 32 ............................. GCCGGACCGAAACCAGAAAAGACAGATGCACA 10970 29 100.0 32 ............................. CGGTCGCCGCCATGGCATTAATGGTCCAGCAG 11031 29 100.0 32 ............................. ATTCTGATGTTCTCTCTGATATGAACCTAGAT 11092 29 100.0 32 ............................. ACCAGCAAACGAAGCAAAAAAGGCCACACGAT 11153 29 100.0 32 ............................. TTGGCGCGGTCCTGGTGTGTCAGTGCACACCA 11214 29 100.0 32 ............................. TACCTGGTAAGCCGTGGGATAACCGTTTTACC 11275 29 100.0 32 ............................. TCTGAATTACAAACGCTGGCGCATATAATAAA 11336 29 100.0 32 ............................. CATTGTTTTAAACGCATTGCTGGGCCACCAGT 11397 29 100.0 32 ............................. GGCCGCGTTCCATCAGGGCGGGTCCAGGGAAT 11458 29 100.0 32 ............................. GTTCCCAATCAGTGACGCGGTACACGTCCAGA 11519 29 100.0 32 ............................. AATTTCCCGAGTTGGCCGCGGGCCTGCATTTG 11580 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACAGCCAAATGGTG 11641 29 96.6 32 ............................A ACAACGTACGACACCCCGCTATCTGCGCGGCT 11702 29 96.6 32 ............................T TTTGCTAACTGTTTATTTAATTGCTCAAGATC 11763 29 100.0 32 ............................. CTGGTTGTGTATATTTGTCGCGTGAATATATT 11824 29 100.0 32 ............................. AGTTGGACCGGCACGGACGCAATAAATATTTT 11885 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 11946 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 12007 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 12068 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 12128 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 12189 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.3 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGACATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //