Array 1 865-149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYZ010000041.1 Clostridium botulinum C/D strain IZSVe-TV_6186_1_16 NODE_41_length_21955_cov_16.1415_ID_7334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 864 28 79.3 194 A......A..........A.C.-....T. TATTGATTTTGCAGTGAACCTCTAGTAGTGTTTTTGCTAAATAATTAAAACAAGCTTGTAAACTACTTATATCAACGTTTGTATAGATTTACTATAAAAAATGGCTCACTGCAAAATTTAGTGATTTTATGTTAAAAAGGTTATAAAGGATATGAAGTTATATAGTATTATGAAGATAATAGAAGGAAAATGGG A,T [852,860] 640 29 100.0 38 ............................. TTGGAGATAAAGTAAGAATAGCATTAAGTGGTAATAAA 573 29 100.0 37 ............................. TCAGAAGGTGTTATAGAAATAGGTGATAATAATTTTG 507 29 100.0 40 ............................. GTATCTAAATCAATGTTAGATTTGGGACCAGAATGGTTAG 438 29 100.0 36 ............................. CTGTCTTTTATATCACCGTTATTATTAAAAGTAATT 373 29 100.0 36 ............................. TGCACCTTCTAGCAACTTGCTGAGTTGACCCTGAGC 308 29 100.0 36 ............................. ATAGCGGAAGTAACGATTGTCATTCCAACTGTTTTA 243 29 100.0 37 ............................. TACCTTTACACAACCAGAATTTTTATTAAATTTAAAC 177 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================== ================== 9 29 97.7 57 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : TATTCTGATATGCTAGTTGGTTTAGGTAATCTTAATATAAATGAAACTGCTAAATTCAATATTAGTGATGAGGCTACAGAATTTAGAGATTATTCTATAAAAGAAGCTGAGGTTTTAGGTGTTGAAGAGGAGCTTTCAAAAGAAGATAAATTTAATAGAATAAAAACTGCTCTACAAGGATTGCAATATTTAAGTCTAAAATCTAACCAATCAAATTATTTAACAGATACTATGCCTAAAGTTGTTATATTGGGTGAATACAAATGGGGAAATAATGTATTTCAAGGATTGATAAATAAAGATGGAGTAAATATAAAAGGTCTTGAGGAAGTAATTGAGGAATATGATAATTTTAGAAATAGTAAGATTTGGATAGGCGTTAGTAATAGAATTTTAAATAAAAACTTTGAAAATGTGAAAGAGGATCTTGAAGAAGCATTTAAGGATTGTGATGATGTTGTAATAGGTAGTGTAAAGAATGCTTTTGATGGATATTTAGA # Right flank : GTTGTATAAAACTTGGGGATGTAGGTTGATTTGTGTAAAAACAAATTAACCTACATCTTTTTTGTATGGAAAATTGGTTAGTTTGGAATAATATACTTATAAGAATTTAGGAGGAATCTAAATGAGAAATTTTGAAGTACCTGATTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 30063-28723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYZ010000001.1 Clostridium botulinum C/D strain IZSVe-TV_6186_1_16 NODE_1_length_199188_cov_38.3988_ID_7254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 30062 30 100.0 35 .............................. TGTGTTATTCAAAGCACACCCAAATAGCGAATTAT 29997 30 100.0 38 .............................. TTTAAATTGTTAAAATATTTTTTAAGTTCATTTTATGA 29929 30 100.0 37 .............................. TTAAGTATATTCCATTTTGATGAAAAACAAGCAATAC 29862 30 100.0 36 .............................. CAAGAAGAAATAACTTTTGAAGATAAAGAAGATTTA 29796 30 100.0 36 .............................. CAATGAAGAAATGAAAGCATCCACCAATGAGTATAC 29730 30 100.0 36 .............................. TTGAGTGAAAGATGGAATGTGTTTAAAATAAATGAG 29664 30 100.0 36 .............................. GCAAGGGATTATTATAAGAAAAATAAATGTGATATT 29598 30 100.0 35 .............................. GATATTGAAAGTGGAAGAGTAATTAAAGTTTGGAC 29533 30 100.0 35 .............................. ATTAGTTTACCACACTTTGGACACATTCTCATTAG 29468 30 100.0 36 .............................. CCGATAGTGTATTCTTTACCTTCAAATTCTACTTTA 29402 30 100.0 34 .............................. ATATAATCTTTTTTATGGAGGTGATACACTTGAT 29338 30 100.0 36 .............................. TGTTTAGCTAGGTAGTTTTGATAAACTTTAGTATTC 29272 30 100.0 36 .............................. TGAAATTGAGAATAAGCAAAAATCAATTCTTGTAAC 29206 30 100.0 35 .............................. TCTGTACTCTCTTCTATAGTCATTTTTAATAGTGT 29141 30 100.0 37 .............................. CATTTATATGGTTCTTGCTTGTCCGATTGACTTTATA 29074 30 100.0 34 .............................. TCGTAATTGTTAATTATTATTTCAATTTTCTTAT 29010 30 100.0 37 .............................. TATAAGTATAGTGATTTTAAAAATATTGATGATCTAG 28943 30 100.0 36 .............................. AAAGTAGTTATTTTGAAACTTATAAATACATTAATC 28877 30 90.0 30 .......A.......T..........T... TTGCATATGTTAAAATAGAAATAAATGTAG CAAA [28850] 28813 29 83.3 31 ......CT....T...-...A......... ATATTTAGTTTTAATTCGCAAGGATTAGTAT T [28800] 28752 30 83.3 0 ..............TT..A....C.....C | ========== ====== ====== ====== ============================== ====================================== ================== 21 30 97.9 35 ATTAATAGATAACAAGATTTGTTTTTAAAT # Left flank : AAAGAGCATATAGCTAATGTTCGATTTATAGAAGATATTGATATTGAAGATATTCATGATGATATAGCACAAATAAATAGTCTATTTCCTTACAGTATCATTAAAGATATTGAGGCTAACAAACCAGAGTATTGTGAAGATAGGATATCTTACTTTTTAAAAGAAACTATGCCAATTGGATATGATGATAAAGGATTGTATGATTATGATACATTAGTACATACAAACCATGAGATATATGAATTAAACAATACGAACAATATATATAAAATTAATAATAATATTCTATATTTCTTATAAATTTAGATATATAATAATAGAATTTTCCCAACTAAAATAAATATATATTATTAATTAAAGGCGTATAATACAATACTTTGATAGAGTTTTTGAATTAATTATTTAAAAAATTCAATTTGGTTGGGAAAATATAAGATGAACCGTTGATATATAATGGTTATAGAGAAAATACAAACGATAAAAATGGCTTTAATCCTATG # Right flank : GAAGTTTTAGATTAAGAAAGGAGGATTTTAAAGATGTTTGATTTAAAAATAGATAATATATATGCACATATAAACAAAGAAGCAAAAGAGACTTTATACCAACATTCTATGCTAACCCAATATTATTACAATAAAATAGATAAAACGCATAATTATACCGAAATATTAACAAAAATGATAAATGAAATACTAATAAAAGAAGATAAACAGTCTAAGGAAACCTCAAAATTTATATCGGATCTAATTATAAGAATGCTATATTATCATGATATAGGTAAGATTGGACTGGGATTTCAACAAAATCGAATGGATAACAAGTTAGATGAAAAATATATAGATTACACTTACCATAGTGAATTATCTGCATTGTTGTTTATAGATATAGAATATAATAATATTAAGGAATATACATTCAGTAATAATAGAAAACAAAATAATCAAACAAAAACTTTAATAAAAGATGTTTTATTAAGACTAAGCTTTTTAATAAAATGCCATCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAGATAACAAGATTTGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 38323-36975 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYZ010000001.1 Clostridium botulinum C/D strain IZSVe-TV_6186_1_16 NODE_1_length_199188_cov_38.3988_ID_7254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38322 30 100.0 37 .............................. GCTTTGAAAGCTTGTCCCGAATAGCTTGTACACTTAT 38255 30 100.0 36 .............................. GAAACACAGTTTAAAAACAAATTTGGAAGTTGGAAT 38189 30 100.0 35 .............................. AGCTAAAAAGAATGGTGAATACCTTCCTGAAATTA 38124 30 100.0 36 .............................. GAATTAATAAAATTAATACAAGACAATACAATGGAA 38058 30 100.0 37 .............................. AAATTTGCCATATGCGGTCCCCAAAGTACCCATTTAC 37991 30 100.0 36 .............................. AAACCTACATGATGATATATGGAAAGTAGAGCTTAT 37925 30 100.0 36 .............................. AAGTAAGCTTTTCCAGTAACTCCCCTTACTTTTAAT 37859 30 100.0 34 .............................. TTAGTGCCATAGTTTGTACTCCAAATATCTAAAC 37795 30 100.0 37 .............................. ATAAAAATTTAAGATAAATTTAAGGGAAGACACTAAT 37728 30 100.0 36 .............................. TGAAGCAAGAAGAAAGAAGCGAATTTATAAAAGAGT 37662 30 100.0 36 .............................. TTTGCTTGTCTTTGTTTTTCTCTAACATACTCCTGT 37596 30 100.0 35 .............................. TCTATTAAAGATTTTAAAGCAAGATTTTCGCTTAT 37531 30 100.0 36 .............................. AGGTAAAGAACAAGACGATGAGGGATATTTTAGAGA 37465 30 100.0 36 .............................. TTTGTAACTGTAAAATCATTTAACTTTTTAATATCT 37399 30 100.0 36 .............................. TGTGATAGAGTAGCATTTAAATATAAGGTTCTAGGT 37333 30 100.0 35 .............................. ACATCTAATATAGTAATAGTCTTTTCTTTATCGTT 37268 30 100.0 37 .............................. AGAATTACGAAGACAGTATGAGAATGCTAGAGAACTT 37201 30 96.7 36 ..................G........... TTTGACAAGCCTGTTTTTTTATCCATTTTTGACATT 37135 30 96.7 36 ............T................. GAAATCGGTTGTCCTTTTGTATAATCTCTTAATCCA 37069 30 100.0 35 .............................. TTTTGTTTTGTTCAGTATCTTTTTTTGGAGTTCCT 37004 30 90.0 0 ...............T.T...........C | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.2 36 ATTAATAAATAACATAAGATGTTTTTAAAT # Left flank : TATTATATTTTTTTTAAAAGTTGTATTAACAAAACTATATTTGTTATAAATAGGAAAATACATAAGGAAAATGGCAAGGTAACTGCCAAGCTTTAGCTTGTGCAGAGTATTTAGATATAAAATAGCTAAGAAGTATAAAGAGTCTAGTAAAGAAAATAAAATAAAAGTAGGACAAACAGTGTGTTTTTGTAGAGAATAAGGCTTTAAAATATGCATTTTATCAACTTATAAAATGTTAAGTGAAATTTATAACATGAACAATTCAAATAAAATAAAGGATAATGTTCTATATATGATATATTAATATAAACAATAGATAGAATTTCCCCAACCAATTTTGTATAACAACATTAGTAAAACATTGATTATATAAGGGTTTAAATAAGATTTAAGTAGAGTAAAGTTATTTGTTAGAATCGGTTGGGAAAATTCTAGTTGAAATATTGGTATATAAGGGTTATCATATAAATATGAACAATAAGAATGGCATAAATACTATG # Right flank : CGCAAAGTTAAAGATTAATATATGTAAAGAACTACTTTATAGTAAGGTAGTTCTTTTTTTATTGCGGAGAAATAGGTTGGTTGTTAAATAAAGTCAAGCAAATCTTGAATAGTAATAGTACTATCTAATTCATAAAACGCCCTATATATACTTTCTATATCATCTACATTTATTCTCTTAATTGTTTCATAATAATAATTTTGAACTGTGGCAGGGCGAATTCCTGTAACATCACATAGCCATTTTTGATTCTTTTTATATTTACCCAATAAATCAGATACTTTGATTTTCAATTTCAACAATATCATCCTCCTTATATGTATATTATAAACTATGAAAGTTGTTTATTCAAACAGAAATGAAATAATACTACTTATATAGTTGACATACTACTATAAGAGTAGTATTATATATTCATAAGGTAAATGAAACCAACAAATTCAAAAATAAATAGGAGGTTTTAATTATGGAAATCAAAACAATTTATCTAATAATTCAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATAAATAACATAAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 109-470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYZ010000043.1 Clostridium botulinum C/D strain IZSVe-TV_6186_1_16 NODE_43_length_21523_cov_13.2255_ID_7338, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 109 29 100.0 39 ............................. CTTACTTATCTTCTAATTCTATAATTCCCATTAATGCAT 177 29 100.0 38 ............................. TGACATTGCTCCTATCTGGATAATATTATTCTATATAT 244 29 100.0 38 ............................. CACGGACACAATAATTCTACATCTATATAATATATTTC 311 29 100.0 36 ............................. TATTGGGAAATGGCTAATTCGCTATTTCCCATGAAA 376 29 100.0 37 ............................. TATCTAGATTGTGTAGGAGTTCGTACTCTTGGATATG 442 29 89.7 0 .........................T.GT | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.3 38 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : AAATATTACTAGAAAGGTGAATTTCCAGTAATATTTTCTGATACTAATTAGAAGTACACAAATCTATCTATATTCTCTAAAACTTTAATATTTAACATTTTAATTTCCG # Right flank : TAATCGGTGACAGGGTGGTGTACATATGAGAATTATAACTTGGAATTGTAATGGTGCTTTTAGAAGAAAATCAGCACCAGACACTTGTCAAAATATTGTTCTTCGTTTCGCCATATTTCGGGCGGTGCCTGGCACCGAGAAGATATAATATAATTAGATCATGTTGATATTATTATAGAATTAGATAGGAGAGTTTATGATATGAATTATGAAAATAGTGAGCAAATTGAACAAATACCTGTTTTAATCCAGAAATTATATTCAATAGTAAATGAACTAGAAACATCTTTTAAAGGTAGAAAATTTACTCTTGATGGACATTTAGTTGGAAGCATAGGGGAGGTATTGGTGTCTTATTATTATGATTTAGAATTATTGCCTAATTCAACAAAAACACATGATGCTAAGACAAAGGATAATAAATTAGTTCAAATAAAAGCCACTCAAGGCAAATCTATAGGAATTAGTAGCAAACCTAATTATCTTATTGTTATTAAAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 3422-5295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYZ010000043.1 Clostridium botulinum C/D strain IZSVe-TV_6186_1_16 NODE_43_length_21523_cov_13.2255_ID_7338, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3422 29 100.0 38 ............................. AATTTAACTGCATTTTCTAAAATGCTTATTCCTTCTAT 3489 29 100.0 36 ............................. TTAGGTACTTGAAGTTTATATATTTTTATTTTTTTC 3554 29 100.0 38 ............................. CTTCAGATTTTCCATCTATGCATATACTAACGTGCTTG 3621 29 100.0 36 ............................. TTTCCATATTGCTTAGATAAATAAACTCTTTCATCT 3686 29 100.0 35 ............................. TGTTGGCAGCTGCTAATTTATACTCACGTCTGAAT 3750 29 100.0 37 ............................. TTAAAAAGAGTATTAAATTCATCTTCAAAATAAAACC 3816 29 100.0 36 ............................. TATATGAGAAAACTTGTAAGTGGTGAATATATGTTG 3881 29 100.0 38 ............................. CTTAAATTACCATGCTCAATCAAACTCATGGTTGCTTG 3948 29 100.0 36 ............................. TTTCAGCAATCTTCTAAAATTAAGCAATCTTTTAAC 4013 29 100.0 36 ............................. ACATTGTTTTAATTTTGTGTCACTCTATTATAATCT 4078 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 4147 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 4213 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 4278 29 100.0 36 ............................. AACTAATCGATTGATACGGATGTGTTATTTTTTTGT 4343 29 100.0 37 ............................. TATGGAACTAAATCGGAAGGTAGTCAAAAATATATAG 4409 29 100.0 37 ............................. GCCTACGAAAGTAAAAAAGATGAAGCAAAAGAAATTA 4475 29 100.0 37 ............................. CCAGAGACTATTGACTTTATTTGTTCCAAGTAATCTG 4541 29 100.0 37 ............................. AAAGATAGAGTATTCAGACCAATACCACTTCCTTGAA 4607 29 100.0 37 ............................. GTTGAAATAGCATTTGGATTTGTAGCAGCTAAATCAC 4673 29 100.0 36 ............................. TATTTAACAGAGGAAGAACAACATTTTTTAAACTAT 4738 29 100.0 38 ............................. ACTTGATGTCCAGCTCCACCTAGTCGCATACCCATTGC 4805 29 100.0 37 ............................. TCTTTTAAATCTAATTTTCTATCTACTACTATAATCC 4871 29 100.0 38 ............................. TAAATTTAAATGTTTAACTAAAAAATTATTCAATGCGG 4938 29 100.0 37 ............................. GCAACACTAGCTAATAATAAAGACTTTAAAACTGCAT 5004 29 100.0 36 ............................. GAAAAAAATACAAACTTATAGGTGATAAGCTTCAAA 5069 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 5135 29 100.0 38 ............................. GACTATTGAAATAACTTAGAGGCTCTGTATCAAGCTGA 5202 29 100.0 36 ............................. CCAGAAATGAAATTGTTACATTTATCAATTAAAGAA 5267 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 99.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATATAAGAAACAAATAAATGATATAATTAACAATATTAGAGTTGGATATTACAATGAAAATGCTTGTGAGGAAATGTTGAGTAATGATAACTCTGTTCAAATGATACCTGTTAGTTTGCTAAGTGAATATATTAAATCGAGAGAAGAAAAACGATATATAGAAGGTAATGAGTTGTTTGTGAATTCAAAAAAATATTTATCAGAATATAATAAAAATCTTAGAATTTATATAACAGATCGTGTTTATGATATTAGAGGACTAGTTGAAAAAGAAATAGATATAGATAATCAAATGGTTTAATAATTTTATTTGCAGTGAACCTTCAGTAGTGTTTTTTGTATTTTTTGAAAAAGTGCTTTAAGTATATATATATCAACGATTGTAAAGAGTTATTGCAAAAAATAGCTCACTGCAAAATTGTATGATTTCTTTTCAAATTTTAAGTGTAAAATATGGAGTTGTATAGTAAAACAAAGATATTAAAAGAAAAATGGG # Right flank : TCATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATAATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 6407-6763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMYZ010000043.1 Clostridium botulinum C/D strain IZSVe-TV_6186_1_16 NODE_43_length_21523_cov_13.2255_ID_7338, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 6407 30 100.0 35 .............................. TCAGCTTTATTTTCCACCTCGGTTATCTTTTTGCC 6472 30 100.0 36 .............................. AAGCCTTGTTTAATTAGTTCAACCACTCTTGCTTTA 6538 30 100.0 36 .............................. CCGATAACAAATATTTTCGGTGAAAACGGAAGCGGA 6604 30 100.0 36 .............................. GCCATTTCCATTAGGTCTAAAATTTCACCTTTATGA 6670 30 96.7 34 ...............T.............. CAAAAGCTAGATGCTATAGGCAAAAAGTTTGAAA 6734 30 96.7 0 ...................C.......... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.9 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AACATTTGTTAGTTTCATTTGGCTTATGTTGTTAATAGACGAGCTTACATATAGCTATCATATATACTGTAGAATAAGTGAAATTATAGGACTTACTTCACAAATATATATTTTAATAAAATATATCAAAAAGGTATATATAATATAAAATATATGGTGTAATTTATATTATGTATAAAATGAGGTATATTAATTTTCGTATTATTAGTTTGTATGCTTATAGGAAGTAGTGTTCTTGTTTTATTTAATCCTTTTAGAAAATTTATAAGTATTTTTTTTGGATTTATTTCGTTACTTTTTTCTTTATCCCAAACAAATAAAAAATAAGCCATAGTAAAGAAAAATCTTTACTATGGCTTATTTTAATTAAACGAAAATTATAATCACAACAATATGATTTTCTTAATAGAAATAAACATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTACGTGTTTGCGTTCAATTG # Right flank : TTTGAATGTGATTTCTATTAATCCCAACCAAGTATTTCTTTTCTAAATCACTCTAATATTATCCCAAACAAATATAAAATAAGCCATAGTAAAGAAAAATCTTTACCATGGCTTATTTTAATCAGTGTTAGTTTCACATTAATTGTGAGGATAAAAAAATGTATAGCCTATATGCATGACTATAAAAAAACTAAAAAACATAATTACATTTAAAAGTGCAAGTAATATTCCTAGTTTCCAATTATATTTAATTAACGTAATTAAAGAAAAAATAAATCCTATAGGACTAACTAAAACTGAAAGCATCCATAAAGGAGTGAGAATGGAACAGAAAGTGGGTATCCATCCTACAATACTTATCAATATACATGAAATTGAAACTATTTTACAAATTTTAAAAAATGTATCATTTGATATTTTAAACATAATTTTCCTCCTAAACTTAATAGTTATTAAGTTTCTTTTGAAAATAATAACTTTTTTCCGAATTAATGTAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //