Array 1 1132-65 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKB010000001.1 Thermococcus stetteri strain DSM 5262 Ga0451167_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 1131 30 100.0 37 .............................. ATGAACTTATTCTTATAATATAAGTTTACTATAAAGT 1064 30 100.0 39 .............................. GAACTAGAGAAGGAAGAGAAGGCGAGGGAGCTCATAAAA 995 30 100.0 38 .............................. TTGACAACAACCACATCGAACTCGTCTTCACGGACGAG 927 30 100.0 38 .............................. TAATGTAGACCCTAATAGAGCGTATGTGGATGTAACTG 859 30 100.0 37 .............................. AATTGAATGGTTCTGGTGCTTTTGTCTGGTCTGTTAG 792 30 100.0 37 .............................. AAGCCCCCAACTGTCCAGGTCTGCGATCCTGTAAACT 725 30 100.0 37 .............................. GTGGATGCAGTGGAAGTAAAGCTTATATTCTAAAACG 658 30 100.0 37 .............................. TTGCTCGAGGAACTCCTTTGCGTGCTGGTCGAAGTTC 591 30 100.0 43 .............................. ATAATGCAGTGACCTTTTTCTTGATTAACTGGAATTCAGTTAT 518 30 100.0 49 .............................. GGGGTAGTTTTCTTTGAGGTAGTCGTAGCCAAAGTGGTCGACGATGTAG 439 30 100.0 42 .............................. ATCAGTCCCGAGACAAACAGGTTTGCTGGTCCAACATCACCG 367 30 100.0 36 .............................. TAGAACACCCATTCCAGCTCCTCTTCTCACTCCAGA 301 30 100.0 40 .............................. CCAGTTCGAGTGTATACTCTCCACTATCCCAAACCCCCGT 231 30 100.0 37 .............................. ATTTTCCAAATGGAGTTTCAGGATGGTAGTGACGGCA 164 30 100.0 40 .............................. TTGTCCTAAGGCGTTTGCTGAGCACTGCATTTGGCAAAAA 94 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================= ================== 16 30 100.0 39 GTTGCAATAAGACTCTTGGAGAATTGAAAC # Left flank : CTGGAAGCTTAGAGAGCTGGGCTTTGACGTTCTATCACGCTGAGAGGAGTTTTACACCGCGAGTTTCCTTTTTCATTCCCGTAAATCAGAATCAACGTCATCATGCGGGCCTGGAAGTCTTTAATAACGGTTGGTTAGCATCTAACAAAAAGTCGTAAATTTGTCGAAATTTGTAACGAAAATTTTTCGAAATTCTGAATGGAGATATTTCAGAGCTTTTTTGATATCCACTCCTAATGCAAATACGATATTTCTGGCAAAGGACTTATATGGGCCTTTTAATTCCCATTTACTGCTGTCAAAACTCCGGGGAAGCCTGGTGTACATATTTGTTCATATTATCATGGGAGGTATAAGAGGCTGTCCCCGGTGAAAAGGGCCCACCATAGCCTCTGGGTTCGAGGTTTTTGAGGGTTTTTCAGAGTGCCCTTTGTGGAAAAGCTTATAAGATTCGGGCGTTCTTAATAGTTTGTAAGGCAAAAGAAGGAAATAACCGCCCT # Right flank : CCCAGTTCGAGTGTATACTCTCCACTATCCCAAACCCCCGTGTTGCAATAAGACTCTTGGAGAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTTGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 40987-39065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKB010000003.1 Thermococcus stetteri strain DSM 5262 Ga0451167_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 40986 30 100.0 36 .............................. TACTATGTGCACTGATTAATGATTCAATATTGTCTA 40920 30 100.0 37 .............................. ATGAATTTCCATAGTAAAGATATATCGTCCGGGTTTC 40853 30 100.0 37 .............................. ATTCTTGGCCTTGATGATTACGAGAAGCACATTAAAG 40786 30 100.0 38 .............................. TTAAAGTTTGAGGTAATTGGTGGCTTGTCGGTTAATTA 40718 30 100.0 37 .............................. CTTGAACTGATCTTTGACGGCCGGAGCCTTGAGGTGG 40651 30 100.0 38 .............................. ATCATTTCGTTAAACTGTTCTTCCAGTTCGTATGCTCT 40583 30 100.0 36 .............................. AAGAATTTCTTATTCTCTGTAACAACTCGTCTGAAA 40517 30 100.0 40 .............................. GAACTTGACCGGGTCATTAGTGAACTGGACGAATACCGTG 40447 30 100.0 36 .............................. CCACCCTACTCTGCTCGTCTACCCATGTCACGACGC 40381 30 100.0 36 .............................. ACAATGTCTTCATTAAACTCTTTAATCCCCTCACTA 40315 30 100.0 37 .............................. CTATCAAGCTTCCACTTTGCAGAAATAGGTAAAGCTC 40248 30 100.0 40 .............................. GCTGTCTGGAGTCCCAGCTTTTCCGCAACCTTGTGTACGA 40178 30 100.0 37 .............................. CTTTTGATAGCGTCGTTGACTCTCTTGATCATTTCCA 40111 30 100.0 36 .............................. ATATCGAACTGCCATGCAAAAACTCCCTTTGCTCCC 40045 30 100.0 41 .............................. TGCAAAGACCCCCCTCGCGCCCTCCGTGAACTTGTCAGTTG 39974 30 100.0 37 .............................. TCGTCATAACCCACTTGAATCTGCCCGACCCGGCTGC 39907 30 100.0 37 .............................. TTTTCTTCATATCTACCACCTGGCAGTTTGATAAGAA 39840 30 100.0 36 .............................. GTGGTTCCTGCGCTAAAGCTGACGCTTCCTAATTGG 39774 30 100.0 37 .............................. ACATTCCTCAGCTTAAGGTTGTTGCTAATTGCATAAT 39707 30 100.0 37 .............................. AACAACTCGTTAAACTGCTCCTCCAGTCTGTAAGCTC 39640 30 100.0 38 .............................. ATATATTCTGATAGCACCAGTAGTCATTCCCTGTCCGC 39572 30 100.0 37 .............................. AACGTGCCGCCTTTTTCATATCTCCCCTCATATTCTA 39505 30 100.0 37 .............................. TTTTTCTTTGTAAAAAGCTATTAGGCGCCTAATCACA 39438 30 100.0 37 .............................. GTCTTGGGCAGACCCAGCTTCATTCATATCACCTCCG 39371 30 100.0 37 .............................. AATTTTTGTTAAGAATAAACGACACGGGGGTTTGGGA 39304 30 100.0 39 .............................. CTATTGATGAAAGGTCTGGCACACTATCTTCATGAACTA 39235 30 100.0 44 .............................. GGGGATCAGGTGGATCTCCTCGACATCCTCCCCCCCTGTTGCAA 39161 30 100.0 37 .............................. CAATAGGTCTGCCAACTCCTCGTCTGCGTAGTCAAAG 39094 30 90.0 0 ...............T........T....C | ========== ====== ====== ====== ============================== ============================================ ================== 29 30 99.7 38 GTTGCAATAAGACTCCAAGAGAATGGAAAT # Left flank : GGCGGGAGGGTTTTTAGGGTTTCTGGTCTGTGTATCACGTTTAAAGCCCGAGTTTTTGAAAAATGTGCCTTTACAGAGCTTTAATTTAAAATCAGACGCTTTTGGAGTCCCGGGAGGTCTTTAGTAACCTTTTGTTATTATTTAACTTTTCGTTGCGTTTTTCGTATTTTTTTGTAACGAATTTTTTTCGGGGTCTGGGAAGGGACGGGCTGAGGGCTGGAAAGCAGATTTTTCCTCGTGGAAAGACGTTCTTTTCCGGTTTGGAGTGTTTTTAACGCTTTTATTGGCTTTTAAAGGTTTCTAATCGCCCGGGGGATGTTCTGAACATTATTGTCTATCGTAAGAATGGGGTGTTTTAAAGGTTCAAATTTTTAATTGGAGTGTTTTCCGGGCCGGGAGAAGGGTCTTGTGTGAGCTTTTTATGAGGGCATTTTCCGAAAGGTTTAAATATTCCGGGGTGCTAAGTTCTCCGATTGCGAAACGGGACAAAATTCCCGCCT # Right flank : TTCATAGCCGGTTTCGTAAAGCTAAGGGAAGGTTGCAATAAGGATTCTTAGAGCCTCGGAGAGCTAAAACTCTTCTTCACTAACTTTGGCTAAACCTCAGAATTCGAAAAAGTTTGGAGCCGGGACCGGGATTTGAACCCGGGTGAAAGGGATCTGCAGTCCCTCGCCTCGCCTCTAGGCTATCCCGGCATTGAACCCTAAGAAAGTAAGCTGGCGCCGCGGCGGGGATTTGAACCCCGGTGGGCACCGCCCACCGGCTTAGCAGGCCGGCGCCCTACCAGGCTAGGCTACCGCGGCACATGATGCCCAGCCTATATGAGTGGAGGAGGGTTTTTAAGTTTTTTGGCGACTCCAAAGGAGGTTGCCACCACCTCTCGTTAGCCACACCCAGCCCGTAGGCTACTGTATAGTTGGATATCATTAACTTGCTGTTTTAACTGAAGGAAACCAAAAGACAGCGAAAAGAAAACTCAGAAGAACTTCCCAAACATGTACTGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCCAAGAGAATGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 106328-109426 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKB010000004.1 Thermococcus stetteri strain DSM 5262 Ga0451167_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 106328 30 100.0 36 .............................. CGTACAGCCGGTACCAGTGGTCCCGAGCGCTCACTG 106394 30 100.0 37 .............................. CCTTTCAAGGTGGAGGGAGTTGTGTGACTTTTAAGAA 106461 30 100.0 38 .............................. ATAATCATATTCATTGATGAAGCTCACAACTACTTCAG 106529 30 100.0 38 .............................. AAACATAGCTTTCGCCCTGTTATAAACCTCCCCGAGAC 106597 30 100.0 37 .............................. AGGGTATGAAGAGCGCCCAAAAGCCACTAAGCCCGAA 106664 30 100.0 38 .............................. CCCTATCCCGGAAAAGGAAAGGAAAACGGGGAAAAACT 106732 30 100.0 37 .............................. TCCCTTACACCATGGACGCGGGAGCGGTTAGAATTGA 106799 30 100.0 38 .............................. TATAATGCGCGTTGAGGACCTTTGGCACTCCAGTTCCT 106867 30 100.0 44 .............................. TTAGCCGTCGTCCAGATCCCACGCGGGATCACCTGCCTTAAGAA 106941 30 100.0 37 .............................. ATGGCAAAAACAAAGCACGGAGACGTCGCTGTTGAAG 107008 30 100.0 39 .............................. CCAAGGGGGCATTCCTCTCAATACTCCCTCACATTCCAG 107077 30 100.0 41 .............................. AGGGTTGTTTGTCATTGCGAGCATCGCTATGCTACCGACGA 107148 30 100.0 39 .............................. CCTTTTTCAAAGTAAACATCACTACCCCCTGACTCACTC 107217 30 100.0 37 .............................. TTCAACGAACTTTCTAAATTGCCTTATTGTCTTTATG 107284 30 100.0 39 .............................. CTAAAAACTCTATTATGTCTCCAAACCTGTTTGTTTCTG 107353 30 100.0 37 .............................. ACTGCAATCACACTCGACCTTGTGAACAATGTGAAAT 107420 30 100.0 42 .............................. CTTATTATGCAAAGACGGATTTGAGTAATGTTGATGATAATA 107492 30 100.0 39 .............................. TCGAAGAGGCTCGGGAGGGTCCAAAAGCGAGTAACCTCC 107561 30 100.0 43 .............................. ATGTTATAGGTTGTGAACCCCCACCAGACAGTATTCACGTTGC 107634 30 100.0 36 .............................. TTTTTCTTTCTGCGTTTTAGGAACTCTTCAAAACTA 107700 30 100.0 38 .............................. CTGAACAAAGCCAACGCGATGCCCTTCTTCACGTCCTC 107768 30 100.0 38 .............................. AAAGCACCCACGCTCATGACGTTAGTATCCCTTCCCAC 107836 30 100.0 35 .............................. TCCCCCCGGTACGCACAGCCCCCTTGCTTCCCTGT 107901 30 100.0 37 .............................. AGACATGGTTGAGGAGGACCCAGAAGGTGCCGTCCCA 107968 30 100.0 38 .............................. GTGTTCAGCTACAGCAGAAGGCAGGTAGGAGAGATTGT 108036 30 100.0 39 .............................. TCAGCACAGAGCCAAACACCAGTAAAGCAAGCAAAACCG 108105 30 100.0 37 .............................. CTCCTGAAGTCTGTATATATCAACCCTTCAAATAGTT 108172 30 100.0 37 .............................. TCTTCACTGCCGTTTCGCCACCGTGCTTATACCTGCC 108239 30 100.0 37 .............................. ACAAAATTCACCTTAGACTTTTCAAAGAATGTGAAAA 108306 30 100.0 39 .............................. ATTGGCTTGGTTGAGTCTTGGAATGCATTTTTGGCAGAC 108375 30 100.0 38 .............................. CTTTCACTGACTCCATGCCCCTAAACATGCCAAGAACT 108443 30 100.0 37 .............................. AACTATCTTTCGCTGGTCCTCTTTGATTTTTTCAATG 108510 30 100.0 32 .............................. ATTGCTCATCAGTAAATATAATCTCAACAAGA 108572 30 100.0 38 .............................. GTGTGTTGTCAATAGGTAATTATCGGTAGAGCTTATAA 108640 30 100.0 40 .............................. CTTGAAAAGAATAGGTCTTTCTCCTGGCCCTTTATCCAAT 108710 30 100.0 35 .............................. CTTGGTTCAACACAACAGACCGAACCATCGCGGCA 108775 30 100.0 38 .............................. GGTTGAATCCATACACAGCGTCCTCAACATGCACCTTC 108843 30 100.0 39 .............................. ATCGGTGGGTAGAGGGGTTATAGTAACGTATCCGTTCGA 108912 30 100.0 43 .............................. TTGATGTATTACTACCATAAGCAACAATGGAAATGAAAAGAAC 108985 30 100.0 38 .............................. TCTTATGGTGTCGTTGGTGAAGATGTAGCCGCTTTCAG 109053 30 100.0 39 .............................. AAATTTTGAATATGCCCGTGTTCGTAAGCGTCTCCGCGT 109122 30 100.0 40 .............................. TGATATTTCTTGCTGTATTTCGCGTTAAAGAGTTCCTCCA 109192 30 100.0 39 .............................. AGCAATTAACTGGTGAGCCATATGGTGAAGAAAATATCG 109261 30 100.0 38 .............................. TCATCAGTTTTGAAAGTAGTGTACTTAATGAGCACAAC 109329 30 100.0 38 .............................. TCATCAGTTTTGAAAGTAGTGTACTTAATGAGCACAAC 109397 30 83.3 0 .........................AGGTA | ========== ====== ====== ====== ============================== ============================================ ================== 46 30 99.6 38 GTTGCAATAAGACTCTTGGAGAATTGAAAC # Left flank : ACTCGATCGCTTAGTCATCGGGAATTTTGCAGTATCACGTTGAAAAGCCTTGTTTTTAGCTGTTCTCCTTTTTCACCAGTTTTGGAAGAAAATAGGCCTTACTTGGGGTTTGGGAAGTTTTTAATAACGTTTGGTTACCATCTGACAATGAGTTACGTTAATGGATGGAATTGTAACGAAATTTTTTCGAGATATTGAAGAACGGCTTGTCCAGGCTTCTTTTGTATACTCTCCTTATGGAAATTTGATATTTTTGAATAAAGATGCAGGAAAACAGATTAATCTCGATCTGCACTCCTCAAAACGCTCGGGAAGTGTTATGCTCATTGTTGTGCATGCCCTCAGCGGAAGGAGGAGAATTGAGTGCTTCCTGAAAAGTCCTTTCACAGTCCTCAAATCGGAGGTTTTTGGGAACTTTTCAAAGTACCCTTTGCGGAAAAGCTTATAAGATTTGAGTGTCTTTAGTAGTTTAGAGGGCAAAAGAAGGAAGAATCCGCCCT # Right flank : AGAAACCCAAAACGGAAGAAAGAAAGGCATCAGAAGAGCCACTGGTTCTCGATACACTCGTCGCACGGCGGCTTCTCGCCGGCGATGGCCTTGAACTTCTTGTAGATACACTCCGGAAGACCGAGCGGACAGCGATCCGGGTACTGGCCGGGCCTTACCTTTGTCGGGTCGAGCTTGACCTTTATGTAGGCCTCGTACTCCTCGACCTTCTTCCACGGGAGTATCTTAGCACCGTAGATGACCAGGTCGTCCGCAATCTTTGCGTAGTCGCCGACGACGGCGTTCTCCTTGATGATGACGTTCTTTCCTACGACGACACCCTCGCCGAGGATGGTGTCCTTGAGCTCGGCGCGCTCCTTGATGATGTCGTTGCCAATGAGAATCGAGCGCTTAAAGTACGCCTTGTCCTCCACGATGGTGTTCGGGCCGATGTAGGTGTAGGCCTTTATCTTGACGCCGTGGCCGATCTTTGCCCCTTCATCGATGTAAACCGGGCCCTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTTGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 137159-135651 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKB010000005.1 Thermococcus stetteri strain DSM 5262 Ga0451167_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 137158 29 100.0 38 ............................. CAATATAGCCGCCAATCCTCGCAGTATAAAATTTTTGC 137091 29 100.0 36 ............................. GACTCCGGGAACTCTGGAATCTCTTCATTCGCAATT 137026 29 100.0 36 ............................. TGTAGATAGTTCCTGGCTCTACTTCTTTGGTGGCGG 136961 29 100.0 38 ............................. CTAAATTGACGAATATCTTCTTCATACACACCACCTCC 136894 29 100.0 36 ............................. AGTTTCTTCCTCGCTGTCTCTACTTGCTCCGGCAGG 136829 29 100.0 43 ............................. TCTTGAACAATCCTTCTGCTGTAACTGAATACTGGAATGGCAT 136757 29 100.0 40 ............................. GAGATATGGGTCAAGTAGTTTCTTTTTTTAGGGAACTAGA 136688 29 100.0 37 ............................. TAGACTATTGTAAGCGCAACAAGTTGCCGACACTCAG 136622 29 100.0 41 ............................. ACGTTATACAAGGAATTGATATTTCAGCTATCTTTGAGGGA 136552 29 100.0 35 ............................. TCGTCTCGGATCCATGTCCCACATTTGGGGCATAA 136488 29 100.0 38 ............................. TATAGGGGATATGATCTAGTATATATCGAGGAAGACAT 136421 29 100.0 39 ............................. GATTTGGGACTACCCCACCATCATAGGGTTATCATCTAA 136353 29 100.0 37 ............................. GCATCTACCAGAAGACCGCGTACAACAACATTGCCAC 136287 29 100.0 38 ............................. GGGACATCATTGAGTTGGAGGTGCTTCTAAGGAGGATG 136220 29 100.0 40 ............................. GCATACCCTACCAAGTCCGGATTGGTAACGTCTAATACAG 136151 29 100.0 36 ............................. AAACTTGTAAAACTATAAAACTAAACCCACAACAGA 136086 29 100.0 38 ............................. TACAATCTATCGTCGCCTTGCTAACTCATTATATGCTG 136019 29 100.0 43 ............................. ATGTTCAACCGCACTGAAACACCGATAATCTGCTCTCTTGTCA 135947 29 100.0 37 ............................. TGTTCAAACGAACCGAAATGCTGAGAATTTTGTCCTT 135881 29 100.0 38 ............................. TATAGGGGATATGATCTAGTATATATCGAGGAAGACAT 135814 29 100.0 36 ............................. GCCAACCAGCCCTCACAGTTCCCATCCTTTGACAGC 135749 29 100.0 41 ............................. AAAAAATGTCCCAAGACGAAGGCGGCCCAGGCGTGATCCAG 135679 29 82.8 0 ......................C..TGGT | ========== ====== ====== ====== ============================= =========================================== ================== 23 29 99.3 38 GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Left flank : GTGCTACTCTTTGACAAGGAGCCGGTTTTCGTGTTCTGAGTTTATGTTTTCTTCCCCGCTCACCTTTCGTTTTTGATTTGAACTGTTTTCCAGGTTCAAAGCCGGATTTATAACGGCCAAAAATGTTTTCGTTTTCCGTTTACCACGCCGGTGGTAAGGATTCGCCGGATGGACACGTTTTGCAGGAAAGGCGTGAAAGGTTCCAGACGTGAAAACGGCCCTGAATTCCGGGATTTTGGAGGGTTGAAAAGCCATATCTACAGCCGGATTTCGTTTTTAATTGTTTTTTCGGGCCCAAATTTATTGGACAGGGTTTCGATTTTTGGAGGGCAATTTTTAACCGACCAAAAGCTTTTGTAGGTAATTTCAAGCATTTTCGTAGGCGCTCTATTTTTGCGTCAGGTTTATAAATGGGCTGCAGTGCCACGGGTTTTCGGGGCAAGGTTTAAATAGGAGTTCTTACGTTATTCCATTTAGGCATCCGGGGAAAAAAGTCGAGG # Right flank : GATATGAAGAGGCCCGTCTACATAACCCAGATGGGCATGCTCGAGAGGAGGGGTAACACCCTCTTCTTCGAGAATGAAAATGGGAAGAAAGCCATCCCCGTTAATTCAACGAGTGAAGTACACTGCTTTAAACCTGTGACGCTGACGAGCGGCGCGATAAAGCTCCTCTCCGAGAAGAACGTTCCCGTCCACTTCTACAACAAGTACGGCTACTATCGGGGCTCCTACATGCCCGCTGAAGGGCAGGTCAGCGGGAGCGTGATAATAAGGCAGGCGGAGCACTACCTTGACGGAGAAAAGCGCCTCCACATCGCGAAACAGCTCGTTGAGGGCATAAAGGCCTCAATGCTGGCACTCCTTAAGTCCTACCGCGCTGATGCTTCCTCAATAGAATGCATCCCCGTTGACGGAGAAAGTCCAGCAGAGCTCATGGGCGTTGAAAGCACCCTCTGGAAGGAGTTCTACGGAATCTTCGGCTCCCTTCTGAAGAACTTCGAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGTAGTCGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 148817-148589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKB010000005.1 Thermococcus stetteri strain DSM 5262 Ga0451167_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 148816 27 100.0 40 ........................... AGTACATACTGGAAATACATGAGCCCTAAGGGGTACAGGG 148749 27 100.0 40 ........................... AGAACTCCACATTTTCCAAGAACTCTACCACCTCATCTAA 148682 27 100.0 40 ........................... AGTACATACTGGAAATACATGAGCCCTAAGGGGTACAGGG 148615 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================== ================== 4 27 100.0 40 GTTTCCGTAGAACGTAGTCGTGTGGAA # Left flank : | # Right flank : CGCCCGCTTCTCGGGGTTCTTCGTTCCGTTGGTTCTCCCTTACTGAACAGGGCAGGATTACGGAAAGCCCCATTGTTAGGAAGTCGGAGTTTTCATGCCCCAATGGTAAGACTTATAAGCACTGAAATTCTAAATAGCCCCCGGCAGCTTGCATTGACGGGTGTATGGAATGAGACTCAAAGTCTCACTGGACATCGAGAACGGCACATTCTCGCGCCCCAACAAGCACGCCGTCCAAGGGTTTATCTACAGCATGCTGAAGGATAGCGAGTACGGTGAAAGGCACGATGAGCCAAGGTTCAAGTTCTTCACATTCTCTGACTTCTTCATCGACAAGAGGGGGAGGCCAACGTTTCTGGTATCCTCGCCGGACCCGGACTTCATAAGGGCGCTTTACTCGGCGATCAGGAAAAGGGAGACGGTCTACATAGGGAAGGAGGAGTACGGAATATCGGAGCTCAAGAAATTTCGGCTTCCGTTGAGGAAGGCTTTCCAGACAG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACGTAGTCGTGTGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 77140-76511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGKB010000007.1 Thermococcus stetteri strain DSM 5262 Ga0451167_07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 77139 30 100.0 37 .............................. GTTATTGCCCACATTACTCCAAGCATTCCAAGTCCAG 77072 30 100.0 35 .............................. GAGATCTTAGAGGTAGTCAAGAATGAGCAGAAACA 77007 30 100.0 37 .............................. CTCGGAAGGGTTGCGGTCGTGCTGGTGTAGGAAATAC 76940 30 100.0 37 .............................. CCCTATCCCGGAAAAGGAAAACGAGGAGAGAAGCTAG 76873 30 100.0 38 .............................. CGTCGCCTTTTACCTCGACGACCTCAGGGACGGCCCCA 76805 30 100.0 35 .............................. AGGGATGCTTCGACGCATTCTTTTTAGCGAGCGAA 76740 30 100.0 37 .............................. ACCTCGCTGCGGGATTCGCTGAAATCCTCCCTACGAT 76673 30 100.0 36 .............................. AGGGCTTCTGTGGGTATGTCCACTTCTCATGTGTGA 76607 30 100.0 38 .............................. ATGATGCGAGGCAAAAAAGACCTTGTTTACGCGATTCA 76539 29 80.0 0 ................CA..-..GA....A | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 98.0 37 GTTGCAATAAGACTCTTGGAGAATTGAAAC # Left flank : CAATAAGACTCTTGGAGAATTGAAACGTGTCAATCTCGTAAATGCCAAAATCGATATTGTGA # Right flank : AGAGGTCTCAAACCTTGATCCTCTTCCACACCGTTCCCTGCGGCGTGTCCTCGAGCTGGATTCCGAGGTTCCTCAGCTCGGCCCTTATCTTGTCGGCGAGGTCGAACTTTCTCTCCTTCCTGAGCTGGGCGCGAACATCTATGAGGAGCTTTATCAGCGCCTCTTCCTCTCCCGCCTTCTGCTCCCTGAAGTAGTCCTCGAAGATGCCGAAGACCTCGCTCACCACCTTGAAGAACTCCCAGGCCTTCCTCAGGATGCTCTCCTTGGGCTTTTCGACCTGTGTAAGGTAGCGGTTCACGGCGTTGCTGACCTCGAAGACAGCCTTGAGTGCCTCCGCAGTGTTGAAGTCGTCGTCCATTGCATCGTAGAACTTCTTCCGTCCCTCTCTTATAGCCTCGTAGGCCTTAAACTCCTCTTTATCCCACTTGAAGGCTATCTCCGCCCTCTCCATTGCCACGCGGATGTTCTCAAGCGTGTTGTAGAGCCGCTCAAGGTTGTTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAATAAGACTCTTGGAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //