Array 1 1069082-1065812 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031376.1 Spiroplasma alleghenense strain PLHS-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1069081 36 100.0 30 .................................... AAGGATGTTCGTTGGAATCTCCGATTTGAA 1069015 36 100.0 30 .................................... GATTTGATGGACACTTCATAATCCCTGAAT 1068949 36 100.0 30 .................................... CAGACAAATTGAATAATCCACATGAATACA 1068883 36 100.0 30 .................................... TTTCCTTTGACTCTTTTATTGTATAACAGA 1068817 36 100.0 30 .................................... ATAAAAAGTTGTCAGAGCAAATCTACTATA 1068751 36 100.0 30 .................................... CCTCTCTGTCAAAAAAACATCGATAACTCC 1068685 36 100.0 30 .................................... ATCAAATAATATACCCTTTCCAACAGTTAA 1068619 36 100.0 30 .................................... TCGCAAATTTTAATGATAACGCACATTATC 1068553 36 100.0 30 .................................... ACTAAACAATGAGCGACCAGTTGCTATACT 1068487 36 100.0 30 .................................... CATTAACGTAGTTAATACGCTTTACTGGCT 1068421 36 100.0 30 .................................... TATTTTTTTTACCGGAACAAATATTTTAGC 1068355 36 100.0 30 .................................... CAAATTGAATGGCTGAAAATAAAGATGAAT 1068289 36 100.0 30 .................................... CCCCTTATCTTTGTAAAAATTGCTATTACG 1068223 36 100.0 30 .................................... AATAGAAATCATCATCTGGTCGGTTCACTC 1068157 36 100.0 30 .................................... AAAGTGCTGAGGACTACTTCTATCAAATCG 1068091 36 100.0 30 .................................... ATGAATTGTTCGATTTCGGGTTTGTTGTTA 1068025 36 100.0 30 .................................... TAGGAACTTCCAAGTTGATTGTGAGGAAAT 1067959 36 100.0 30 .................................... TTCTAAAGTTCTTTTTCTTGTTTCTTCCCT 1067893 36 100.0 30 .................................... AACTTGAATATGCAAGAATATTGGCTACTC 1067827 36 100.0 30 .................................... CTCATTTTTGATAATCAATATCTTTAATCT 1067761 36 100.0 30 .................................... ATAAAAAGTTGGCAGAGCAAATATACTATA 1067695 36 100.0 30 .................................... CAAATGGAGGCGGTATTAATCGCTCTTGTA 1067629 36 100.0 30 .................................... AACTTTTTGGTGAGAGAGTTGAAGTTGATT 1067563 36 100.0 31 .................................... CCTAATAACACCTTAGCACCTCCTGGTTCTT 1067496 36 100.0 30 .................................... AGCACCATTAACAATCGTAGTGAATCGTGT 1067430 36 100.0 30 .................................... AAAATGAATCCGATAAAGAGCGGCTAGTGG 1067364 36 100.0 30 .................................... AATGGAAAAGGTTAGCGAAAGAGAACTACA 1067298 36 100.0 30 .................................... TAGAGAAAAAGAGATTGATTTTGATTACAC 1067232 36 100.0 30 .................................... GAAACCGAAGAGTATCAAAAAGTAGTTTCA 1067166 36 100.0 30 .................................... AGAATCCATTTGAAAAAGGAACTCAAACCT 1067100 36 100.0 30 .................................... GGGTGTAAGAGAAATTCGGTATCCTAATAC 1067034 36 100.0 30 .................................... ACCCAGTTCCTAAAAAGAACCTATGGCTGA 1066968 36 100.0 30 .................................... GTATTGATATGATACTAACTGACCCACCAT 1066902 36 100.0 30 .................................... ATTTAACAGGGAATCGTATAGATACTTCTA 1066836 36 100.0 30 .................................... TTATTAAATAGTAGTGAAGTACTTATTACA 1066770 36 100.0 29 .................................... TGATCAATGTAGAGGGTATAAAGGACTAT 1066705 36 100.0 30 .................................... AATATAGAAACTTTCTGATTGATATGGTAA 1066639 36 100.0 30 .................................... CAGAGTTAACAGATGTTTATATAAAAGCAT 1066573 36 100.0 30 .................................... TTCCAGAACACACAAACTTAGCAGTAAGCA 1066507 36 100.0 30 .................................... AAAAAATTGAGATTGTCAATGAGAAGAATT 1066441 36 100.0 30 .................................... TTTTAAAATCTTTTCTATAAATTCCGTTGT 1066375 36 100.0 30 .................................... AAATTGAAAGCGAATACCTTTTAATGAGTT 1066309 36 100.0 30 .................................... TAGTTTTATGTGCTTGCTTGCTATCGTGGT 1066243 36 100.0 30 .................................... AACAAATGACAGTAGCAGAATTAAAAACAT 1066177 36 100.0 30 .................................... TTGTTCCATGCTTTGTATGAGAAGCAGCTG 1066111 36 100.0 30 .................................... TAAAATATGAAACTGATGGAGTTGATGATA 1066045 36 100.0 30 .................................... TTAGAAAGGAGGAATAGAAAATGGATTGAG 1065979 36 100.0 30 .................................... TAGAGTTTTGCTACAATTATTGGACAGCTT 1065913 36 100.0 30 .................................... TAGAAACTGTTGCTTTTGTAGTATCTTTGT 1065847 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 50 36 100.0 30 GTTATGGTACCTTGTAAAATTGTGTTGTGCTAAAAC # Left flank : AAGAAAATTTATATTTATTGAGCAAAGAAATTAGCAATTTATATTTTGCAATAATAGATTTATTCAATCAATTGGAAAGCAAGCATCTACTATTCATCTTTAATAACCCGTTTATTTCTCTTAATACTAAAGAAATATTGGATTTATCAAATCAAATAAATAAACTGGATAACTATATTATTTTTTTGTCAAATAGCTGCCATATTGAAATTAAAAATATTGAAAATTCAAAAATTATTGCTTTTAATAATATTATAGATATTGCAAAAATAATTGACGACCCAACGGAGTACTTAGAGTATTTTGATAAACCCGATAAAAATATATTTTTAGAAAATTTATTTATTTTTATACAAAAGTACCTCTCCTTAAACATTCTATACTACACTAAAGAACAACTGCTTTCGTTATTTGAAAAAAGTGAAAATATGCCTTTTAGGGCCGGAAAGATAGTTTTCGACAGAAAACTTTAATTTTTTACCAAAAACTCTTGATTTGGG # Right flank : ATTAGACGTACAAGTTGACTATGGTTGTACTATTTGTACCAAAAAATTAAAAAAAGTGATTATGAAAATCTTTTCTTTATTACAACAACTGGTCAAGAGAAAAGAATAGAAAAAGAAAAGAATGTCATGGTTTTAAGAAGTAAAGTAAAATACTTTAATACGTACTACAGAAAAATAATTGCTGAGCTTCTGTTCTTGGTAATATTTGAACAATTGGATATTAAATAATGGAGTATTTTTATTCTATTATTTTATGTTTTGATAATATATAAATTTGCGTTTAATTTCCTCAAAGGATGTAATAACTATGGAGGATCACTATAATTAAAAAATTTAATCTGGGAGCGAGAAATTAGAATTAGCATGCTTTGCAATTTTTTCATCATATGGGGATTCTAAATCTCACGCAATAGAGGTGATCGATTTTGCAAAAAAAGGTGATTATAACCTGGCAAACTAAAAAATAGTAATAGCTGATTAAGCGGCATTAAATGATGAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATGGTACCTTGTAAAATTGTGTTGTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //