Array 1 17672-17995 **** Predicted by CRISPRDetect 2.4 *** >NZ_JROO01000009.1 Streptomonospora alba strain YIM 90003 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 17672 37 100.0 34 ..................................... CATCGTCTGACGGATGAAAAGACGGAATGGAATG 17743 37 100.0 35 ..................................... GGCGAGGGCACCGACGTCATCGTGTACGGCGAGGC 17815 37 100.0 35 ..................................... GTGACCGTGGACGCGTCGACTTCGGCGACCTGCCA 17887 37 100.0 35 ..................................... TGCGTCATCGCCTCCAGCTTGGCGTCGACGCCCTG 17959 37 97.3 0 ...........A......................... | ========== ====== ====== ====== ===================================== =================================== ================== 5 37 99.5 35 GTGGCGGTCGCCGTGAGCGGCGGCCGAGGATCGCAAC # Left flank : ACTGCGCCATTGCCGACACACGACCGCTCGACCGTGATCGTCAGAGAAATCGTGCCGGATTTCCGGGGCGTTCGTGTTAATAGCCCAGGAGAGTGCCACTCTCCACTTTCGTGGCGGGCTGAACTGATGCAGGCCCAGTCCACGGTCCTCCGACGGCGGGCGGCACGTTCGGTTTCTGGGCGCGGTGCGCGAAGCCAGGCGAAGTGAGAACCCTGATGGTGCACGACACTTGGCGTTTGGGTGCACCCTCCGGGTGCACGAGCCTGTCGACCGCCTCGGGGGTCATCTTGGACGATCTCCGCCTGGCAGCGCCACACGGCGGGCCGGCCGGTAGGCTGGGCTGTGGGCGCAGCCCGTTGTGTGGTGGGCTTCGGAACCGGAAGCTCTCATGGATTCCCGGGGAGGTTCCGAAGTAGGTTCCTTCCTGAGCGGGTGGGTATGTCTGTTCTCGGTGCAGTGCGCGGCGGGGATCGTTTGGGCGTTTCGCCTGCTCGGGCGCT # Right flank : CCCCCGGGGCTGCAGACCGGAACACAGCAGGACGTGGGAGGGTGGCGGGCGCCGCCAGCAGGCCGGGTGCGGGGCGAGGTCCGAAGGCTCACGGGGCCGGCCGGGCCATCCCGTGCAGCTCGATCCCCTCGATCGCCTCGGGGGGCATCTTGGATGATCGTGGGCATGGCAGCGTCACACGGCGGGTCGGCCAGTAGGTTGGGGTGTCGGCGCAGCCCCGTTGTGTGGCGGGCTTCGGAACCGGAAGCTCTCATGGATTCCCGGGGATGTTCCGAAGTAGGCGTCGAGGTAGCGACCGTTGGTACCAGACATCCTGATATTTTCTACTTTATTCGAAGCTTACCAAGGTGAGATCGTAAGTTTGCATATTCTCATCACTGATTGTCCAACTGCGGTATTTATCTCTCTGGCTAGATCTTGAACTAGGGCCACGTAGTCGTCCACATCGATATGCGTTGCAGACGCTGAGGCTTCGCCATGAGCTATGGCATTGCGCCTCG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCGTGAGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 26576-27049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JROO01000009.1 Streptomonospora alba strain YIM 90003 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 26576 36 91.9 36 .....................-.AT............ GAATCCGAGAACGTCACGCGCGTCTCCGTCACCGAG 26648 37 97.3 37 ......................A.............. TCTTCGGACCATCCCTGCCAGCGGCGCGGCAGGTGCA 26722 37 89.2 36 ....T......T..G...A.................. TCCATCAGCCGGGTATCGCGGGCGATGTCCTCAGGA 26795 37 100.0 36 ..................................... AGCCCAGCCGGGAAGCGTGCGGACAAGGATGTCGTC 26868 37 100.0 35 ..................................... ACGGGCTTGTCCTCGCCCTTCTCGGCGGCGGTGTC 26940 37 94.6 36 ........G......T..................... TCCCTCATACGTCCGCGCACGTCCTGTCTCAGAGGG 27013 36 81.1 0 ..............G..........-TCC.C....T. | C [27043] ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 93.4 36 GTGGCGGTCGCCGTCAGCGGCGGCCGAGGATCGCAAC # Left flank : TGAGAGCACGAGAGGGGCGCGTACCAGCGCGCTCTTGCCAGAATTGTTCTTGCCCAAGACGACCGTGATGCGCCCGAGTTCGATATCCTGTCGGTCGTCGAAGCAACGGTAGTTCTCCACGGAGAATCGTGAGAGCGCCATGCGGTCGAGTCTAGACTGTCGGTGCGGGCCTCGCACCACCTACGCTGCTTGCGCAGCGGGGCGCGATGGCCACCGATAAGCGGGGGGTAGTGGTGGCTAGAGGCGCGACCCCCGATGGTGAACGAGTCCTCGATCGCCTCGGAACATCTTGAACGATCGTCGGCATGGCAGCGCCACACGGCGGGCCGCCAGTAGTCTGGGGGATCGGCGCAGCCCGTTGTGTGGCGGGCTTCGGAACCGGAAGCTCTCATAGATTTTCGGGGGGTTCCGAAGTAGGTTCCTTCCTGAGTGGGTGGGTATGTCCGTTCTCGTTGCACTGCGCGGCGGGGCTCGTATGGGCATTTCGCCTGCTCGGGCGC # Right flank : CCGGCGCTGTTCAGGTGGCGGGCGCCGCCAGCGGGCAAGGTGCGGGGCGAGCCCTCGCAGGCTCACGGAGCCGGCGGGGCCATCCCGTGCACCCTGGTGCACCCTCGCCGCGGGGCCGGATGACGGGATGGAGTCTGCACAGCGGGCCGTCGGCGCGAGGTCGTGCACCCTTGCGTGCACCCTGGGCATGAAAAAAGCCCTGCCTGTTCGATCTGGTATAGCAGGTCAGGGCTATTTTTCGTACAGAGCGGATGACGGGAATCGAACCCGCGCTATCAGCTTGGGAAGCTGAAGTTCTGCCATTGAACTACATCCGCGTGGCAGCAGAGGCTCTCGAGCCTCCGCCGACGTGTCCCAGTCTAACGGATGTGTGCGCGGTAGGGGTAACCGGCGCTGGGGCCTGCGGGTGTGGGTGAGGCGGTAGGTTCTGGAGGGTGCTGCTCTCCGATCGCGACATCAGGTCTGAAGTCGAGGCGGGGCGGGTCAAGATCGATCCGTAC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCGTCAGCGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //